Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0004930 | OGI:02010430 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:3510157-3512766 | ||||||||
| Gene Symbol | prx24 | ||||||||||
| DNA seq | ccccttttgatcagtggccgctgttcacgacagcgcagttcctcctgatctccccatcggagccggtcttgacctgcaccgcgcccagcgtcgccatcgaccggccgaacacctggaagaacacctccggcaggctcgccacggcgccggcgatgtcggcccgcgccgccgcgtcggtgactagcgcggcgtcggaccggagcaggccgcggtgcctgagcaccgcgcggtagtagccgagatcgaacgtcaggtggctgccggggtccatctccaccacgccgtcgccggccgtcctgcacttgcgctcacgcaggttggcggcgtaggcggcgtccagcggcggcgggtcggtgttgttgccgttggcattgccggcgccgccgccgccgttgtagaggcggtcggcgaaggacgagcagtgggcgatgccgatggtgtgcgcgcctgcgcgatcggatgcaatttttcagaaatcattttacacccaagaattcattgtgataatgtcacacatgtgtccttaactcctcattcttgcacaaaatcatgcttgaatttttatgatgttggcttgctgtagatcgccattttctggacatgaatcgagcatccaaattttcggttgatttgatgctaacttacgagattatataaatctatttatttcagtttatttacattggtcataaatcataactgtagaaattatgacattgctgaacaagttaagtcagttcaatggtagataaaattgactagtcatcaacacgaactgacagatagaaagcaactattattcgtgctccttttgcatgcagacatgcagatgcctagtcagcaaacaaaggattggaaattcagacacaaagctttcctctctgaaattaatcttacagcttctacattatgtctcccaccgacagtgcagattaattacatgctaatagtgtattttggatctgattaactagagtaatctgtttagtttagctgataactgagattaattacatgctaacagtgtaatttggacctggttaactagagtaatccaagttgtttagtttgtgcagataagtggtactaagtatcctcggtttcataatataagttgtttcgaatttttttttatcaaatttcttgaaaatttgatcaaatctctacaattataaaaattaaagatatttccgcgatctgttatctgtgtttgagtcggttttaattttatattttgattttaatctataactctatctcttgtctactattataaaaattgaagatgtttttaccggtactttggtacgtcatctttgtatgagtcaatttttaagttcgtttgcttttggaaatacagatccgtatttgagtcaggttttaagttcgttcgcttttggaaatacagtcatataagaaacttaataaaaaactcacatgctaacttggcatgattttctagaaaaatatatatccaagcgaattctcacagtgaatttcagagtgaacaataataagattaaaatagacttcacccattacaacgcacgggcattttttctagtttataaaaaaaaatataacactcataacaccaaattaatttcattacatctaacatttaacatattttgataatttctttgttataggttaaaaatattgctatgtttttcaaacctaaataagtttggcttagaaaataatcaaaatgacttataatatgatgaaacgaggatagtaattaataatgtgaattaatgaattcgttcataatcgtcacgtacctgacagccagacaaggtcacgcacgctgaggcccttggtggcgaacaagccggcgagctccgggaagctcatcgccggcgaggggatctccgcgagcgcctcctgcatgctcgacaccgtgccatccctcctccccgtcggcacgcgccacgacggccctccctgcagagcatgttcagcatcgtcaggctccggccagtgcgcgcggcgcgcggcgaccgtggcgagcgctcgagagcttacgatggcggcgacggcgtcgcgggcggcgagcgcgaggacgtcggcgcaggagacgacgcccgggcaggccgcctccacgaggcccttgacgcggtcgatgaggtcgaaccctcgcagcgtctggttcggcgccgcgtccttctccgccgtgccgccattgccggtcgagttgaggaggatggacgcgtcgcagccctttttgacaaacgcacaacacattccatcaaacacattgcagacattgcacgcgcatcaatggcggccgcgcggcgcggcgcggcgcacgtaccctgacgaagcagtcgtggtagtgcagccggaggagcgcggcggcgacggtggggacgcggccgacgtgctgccggacgtactccccgacgatccgctccgccgcggggcagctctcgtcgtagaaccccatcctgagctgcgcgcgcgcgccgccgatcacgccggcgccgaggacgacgatggccgccactccgagccggatcaccgccattggcacgccgcccgcgcgtcgcctcctcgtgctcgccattgccgcccactcgactactcaactcaacttaactcaac
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| CDS seq | atggcgagcacgaggaggcgacgcgcgggcggcgtgccaatggcggtgatccggctcggagtggcggccatcgtcgtcctcggcgccggcgtgatcggcggcgcgcgcgcgcagctcaggatggggttctacgacgagagctgccccgcggcggagcggatcgtcggggagtacgtccggcagcacgtcggccgcgtccccaccgtcgccgccgcgctcctccggctgcactaccacgactgcttcgtcaggggagggccgtcgtggcgcgtgccgacggggaggagggatggcacggtgtcgagcatgcaggaggcgctcgcggagatcccctcgccggcgatgagcttcccggagctcgccggcttgttcgccaccaagggcctcagcgtgcgcgcgcacaccatcggcatcgcccactgctcgtccttcgccgaccgcctctacaacggcggcggcggcgccggcaatgccaacggcaacaacaccgacccgccgccgctggacgccgcctacgccgccaacctgcgtgagcgcaagtgcaggacggccggcgacggcgtggtggagatggaccccggcagccacctgacgttcgatctcggctactaccgcgcggtgctcaggcaccgcggcctgctccggtccgacgccgcgctagtcaccgacgcggcggcgcgggccgacatcgccggcgccgtggcgagcctgccggaggtgttcttccaggtgttcggccggtcgatggcgacgctgggcgcggtgcaggtcaagaccggctccgatggggagatcaggaggaactgcgctgtcgtgaacagcggccactga
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| Protein seq | MASTRRRRAGGVPMAVIRLGVAAIVVLGAGVIGGARAQLRMGFYDESCPAAERIVGEYVRQHVGRVPTVAAALLRLHYHDCFVRGGPSWRVPTGRRDGTVSSMQEALAEIPSPAMSFPELAGLFATKGLSVRAHTIGIAHCSSFADRLYNGGGGAGNANGNNTDPPPLDAAYAANLRERKCRTAGDGVVEMDPGSHLTFDLGYYRAVLRHRGLLRSDAALVTDAAARADIAGAVASLPEVFFQVFGRSMATLGAVQVKTGSDGEIRRNCAVVNSGH |
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| Function | Peroxidase 3 [UniProtKB/Swiss-Prot:O23044] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004930 | OsLiXu_02g0004930.01 | Chr02 | 3510157 | 3512766 | - | NAM | ||
| CDS seq | atggcgagcacgaggaggcgacgcgcgggcggcgtgccaatggcggtgatccggctcggagtggcggccatcgtcgtcctcggcgccggcgtgatcggcggcgcgcgcgcgcagctcaggatggggttctacgacgagagctgccccgcggcggagcggatcgtcggggagtacgtccggcagcacgtcggccgcgtccccaccgtcgccgccgcgctcctccggctgcactaccacgactgcttcgtcaggggagggccgtcgtggcgcgtgccgacggggaggagggatggcacggtgtcgagcatgcaggaggcgctcgcggagatcccctcgccggcgatgagcttcccggagctcgccggcttgttcgccaccaagggcctcagcgtgcgcgcgcacaccatcggcatcgcccactgctcgtccttcgccgaccgcctctacaacggcggcggcggcgccggcaatgccaacggcaacaacaccgacccgccgccgctggacgccgcctacgccgccaacctgcgtgagcgcaagtgcaggacggccggcgacggcgtggtggagatggaccccggcagccacctgacgttcgatctcggctactaccgcgcggtgctcaggcaccgcggcctgctccggtccgacgccgcgctagtcaccgacgcggcggcgcgggccgacatcgccggcgccgtggcgagcctgccggaggtgttcttccaggtgttcggccggtcgatggcgacgctgggcgcggtgcaggtcaagaccggctccgatggggagatcaggaggaactgcgctgtcgtgaacagcggccactga
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| Protein seq | MASTRRRRAGGVPMAVIRLGVAAIVVLGAGVIGGARAQLRMGFYDESCPAAERIVGEYVRQHVGRVPTVAAALLRLHYHDCFVRGGPSWRVPTGRRDGTVSSMQEALAEIPSPAMSFPELAGLFATKGLSVRAHTIGIAHCSSFADRLYNGGGGAGNANGNNTDPPPLDAAYAANLRERKCRTAGDGVVEMDPGSHLTFDLGYYRAVLRHRGLLRSDAALVTDAAARADIAGAVASLPEVFFQVFGRSMATLGAVQVKTGSDGEIRRNCAVVNSGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0161800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0161800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004760 | RBH | 0.0 | 1.923125 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004970 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004790 | RBH | 0.0 | 5.137012 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004740 | RBH | 0.0 | 0.0 | 2.605433 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0057200 | RBH | 0.3253295 | 0.2463895 | 0.168462 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0060200 | RBH | 0.762244 | 0.3739735 | 0.6910925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005090 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026830 | RBH | 0.978916 | 3.017502 | 2.827859 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004700 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004710 | RBH | 0.0 | 0.0 | 0.588946 |
