Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0003870 | OGI:02008680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:2803015-2806806 | ||||||||
| Gene Symbol | GATA17, OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b | ||||||||||
| DNA seq | agaaaaaaaaagaaaacaaaaaaaaaaaccgcccgcggctatacacccgagactcctacggatcgaagccctagggtttggtctcgcctccatccccatcgtccgatccgatcccccgccatgagcggccaccacgaagctaagccctaccagccccgccgcggcccggctcccgccgacgaggaggccgcccccgccgctgcggcggacgaggcggaggcggaggcggaggtggaggctatggagcggtacgagcaggagcaggagtacgaggagggggaggagggggaggaggaggagtacgagggcggggagggggtccccatggacgccgacgcctccgccgcggccgtggcggggatggacccgcacggggagatggtgcccgtggccggcggggaggcgggcggcggctacccgcacgtggcgtcgaacaccctcacgctgtcgttccagggcgaggtctacgtcttcgagtccgtttccgccgagagggtgctgtgcctgcgccgctcatccatgatttcagtttttttttgtgtgtgttttgcgcacctgaattgctcggtgaatcggtgatgagtttgaattacttgtgttggcaggtgcaagctgtgctgttactgcttggaggaagagagctagcaccagggtcgggttcggtaccatcatcttcagcggcatacagtaaggtgaagtcatcgctgggcgaattatggtgattgccagttgagactattttaaattgtaatggtgcttatgtgactgtgtgtactctcttatgcagaagatgaattttcctcaccggatggcatcattgatgaggttccgggaaaagagaaaagagagaaactttgataagaagatccggtatactgttaggaaggaagttgcacttaggttagttagactagccttttaatatagccttcttttccctgtctatattctagagcatctgttatgttgtgtatttagtgttagcttattaatataatccattttctctgtttaatattatgaagttttcttatggtggatgaacttgttattgcatttgattttgtatatttggcaatgtgaattttcctttttaagttttatgagatagtagtaattattttctatacatttacaggatgcagcgtaatagaggccagtttacatcatcaaaatcgaaggctgaagaagcaacatccgccataactagttcggaaggttcgccaaattggggcgcagttgaaggtcgacctccatcagctgctgagtatgtattcaaactattgtacttattatatctttatatgttcatacttcccattagtattatataaatgcatgaaaatcattacaaccatatttatatgagggatggccatttctttatgtagtaaataagtgtgccattcatggatcctgatttcccacctgggcaactgaattgtgttgtttcgaaaattcatccataattgggaaatatattcaatatgctccaattataagaaaatcagtttccattgcaacacatgggtgcactgctaggtatatctttgacctagtaaggatgcattatctcatgctcgcactgtccacagggacattgggctatcatacagagactttgtcgttttctctcagtcaccaacccaacctccaccatgtgccatgcagcatgcacgcacgtcgctggagctagctagctagccattttttaattgaacacttctgggtagtgagaactgtgaagccttgaatcaagcctttaactcagtttgatatttgaaaatttacagcacaactatcctgcatatatttcaattgtagttgggtgcaaaaaataaatcaaaatgcatgggaaacctccagcggaaaatggatcaatgtatacatctttctagttcctgataaaaaaaatgtagcatcaatttctgtaccaggcaaggtagaagcacgtgattctaaatcttgactattcaaggtgtttgccatgtggcgaatgtgacactgcactttcgtactgtagaaggtcatgcagcataaaattaaaaatttcgaaatgagaattgtctgacttgcatcattcactgcttaccagatctagctcttccatttcagacaggtttttgctatttggctgttgataactaaaaaatgatagttggtcttgatcaattgtttgccacccacatgataatagatgcctcttgcctcttgcacctgttgcttgtatatttgccttatattttctagcttcttttgcttcagaatttgaaacttagttcttgttgtgagagttactttccatgcacaattctttcaggtgccatcattgtggtattagtgcagcgtcaacacctatgatgcgccgtggtcctgatggcccaagaacattgtgcaatgcatgtggacttatgtgggcaaacaaggtacttccaatctttattgcactgcaccagtatctttctatacattggtgctaattgcaacttctagaataggctgtatgttgtttgcataacctttgttgcatcgagggtgtctccttcaatattaatataatgaacaatttttgcctttctagagcccaggtactgtaaaatttccccttttaccatatgctaagtttggtggtaaaagttatactgttctagcttgattgttgtagctctcagggtggatcttttgtgtgatctgttgagtgtccaatgcatcccaaatcacagttcacatgtatggtcccatcgtgaaagttggaacacctgtaaacagtcatggaaattgtaacgtccccacccaaaacctccattaccccagtggttcagtgttggttttaagttcttagcttgcagacaagttgcatttagcgtttttagggtcagtcttggtgttattgacaatattctgctccaatttgttcgtatttcgtagggtacgatgagagaggtaacaaaaggtccccctgtgcccttgcaaattgtgccagctgcaaccaatgatgttgtaagtcactatgtttgcacttcattcattcagaattttagattgcaaattttatttatagatttacccctcatccttttctaactcaaatttagcgttgtgtaaaaccattgtttgggcctgatgaaattggcattagagtgtaagacatatggactgatgaaatgcatccttagggtgcacttgttctttctttataggatgaggatttgtgacttgtgagcacgaaacaatcacgtattgcagtttctagaaaaaataactgttctagagcagtgaattttaaagtgggccagtagtcttactcaaaatgtgaattacccgtgtttttcagcagaacggaatcgtcgaggcaacaggtgtcgagcagcacaattctgcagtcgaggaggcagtttctgctgcaaatggccatgaatcgcagtcgggagtcgcgtgatgcttgagggttcagacttgagaaaaaggaggaggatgcgtatcaatcaacaatcaagtagtcatggtgctcaacaagttaaccggatgtatgatatgaccggctctaggattcatgtggttctgcaatgccggtctctccgagatgatatatgcttgtggccggctttttctatgcttgtatttgagttttatagctttgcctttggcagtagataaatggacgagttcagcttgagcgcatgtgacatattttgcattttactctcttgtcagatgtaatcgttgatttacaggtgacactgggcaagcaggcaggttaatttcacaatcgcagcatcagtgcattgtctg
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| CDS seq | atgagcggccaccacgaagctaagccctaccagccccgccgcggcccggctcccgccgacgaggaggccgcccccgccgctgcggcggacgaggcggaggcggaggcggaggtggaggctatggagcggtacgagcaggagcaggagtacgaggagggggaggagggggaggaggaggagtacgagggcggggagggggtccccatggacgccgacgcctccgccgcggccgtggcggggatggacccgcacggggagatggtgcccgtggccggcggggaggcgggcggcggctacccgcacgtggcgtcgaacaccctcacgctgtcgttccagggcgaggtctacgtcttcgagtccgtttccgccgagagggtgcaagctgtgctgttactgcttggaggaagagagctagcaccagggtcgggttcggtaccatcatcttcagcggcatacagtaagaagatgaattttcctcaccggatggcatcattgatgaggttccgggaaaagagaaaagagagaaactttgataagaagatccggtatactgttaggaaggaagttgcacttaggatgcagcgtaatagaggccagtttacatcatcaaaatcgaaggctgaagaagcaacatccgccataactagttcggaaggttcgccaaattggggcgcagttgaaggtcgacctccatcagctgctgagtgccatcattgtggtattagtgcagcgtcaacacctatgatgcgccgtggtcctgatggcccaagaacattgtgcaatgcatgtggacttatgtgggcaaacaagggtacgatgagagaggtaacaaaaggtccccctgtgcccttgcaaattgtgccagctgcaaccaatgatgttcagaacggaatcgtcgaggcaacaggtgtcgagcagcacaattctgcagtcgaggaggcagtttctgctgcaaatggccatgaatcgcagtcgggagtcgcgtga
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| Protein seq | MSGHHEAKPYQPRRGPAPADEEAAPAAAADEAEAEAEVEAMERYEQEQEYEEGEEGEEEEYEGGEGVPMDADASAAAVAGMDPHGEMVPVAGGEAGGGYPHVASNTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELAPGSGSVPSSSAAYSKKMNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSAITSSEGSPNWGAVEGRPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPVPLQIVPAATNDVQNGIVEATGVEQHNSAVEEAVSAANGHESQSGVA |
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| Function | GATA transcription factor 17 [UniProtKB/Swiss-Prot:Q6Z433] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0003870 | OsLiXu_02g0003870.02 | Chr02 | 2803015 | 2806781 | + | NAM | ||
| CDS seq | atgagcggccaccacgaagctaagccctaccagccccgccgcggcccggctcccgccgacgaggaggccgcccccgccgctgcggcggacgaggcggaggcggaggcggaggtggaggctatggagcggtacgagcaggagcaggagtacgaggagggggaggagggggaggaggaggagtacgagggcggggagggggtccccatggacgccgacgcctccgccgcggccgtggcggggatggacccgcacggggagatggtgcccgtggccggcggggaggcgggcggcggctacccgcacgtggcgtcgaacaccctcacgctgtcgttccagggcgaggtctacgtcttcgagtccgtttccgccgagagggtgcaagctgtgctgttactgcttggaggaagagagctagcaccagggtcgggttcggtaccatcatcttcagcggcatacagtaagaagatgaattttcctcaccggatggcatcattgatgaggttccgggaaaagagaaaagagagaaactttgataagaagatccggtatactgttaggaaggaagttgcacttaggatgcagcgtaatagaggccagtttacatcatcaaaatcgaaggctgaagaagcaacatccgccataactagttcggaaggttcgccaaattggggcgcagttgaaggtcgacctccatcagctgctgagtgccatcattgtggtattagtgcagcgtcaacacctatgatgcgccgtggtcctgatggcccaagaacattgtgcaatgcatgtggacttatgtgggcaaacaagcagaacggaatcgtcgaggcaacaggtgtcgagcagcacaattctgcagtcgaggaggcagtttctgctgcaaatggccatgaatcgcagtcgggagtcgcgtga
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| Protein seq | MSGHHEAKPYQPRRGPAPADEEAAPAAAADEAEAEAEVEAMERYEQEQEYEEGEEGEEEEYEGGEGVPMDADASAAAVAGMDPHGEMVPVAGGEAGGGYPHVASNTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELAPGSGSVPSSSAAYSKKMNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSAITSSEGSPNWGAVEGRPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKQNGIVEATGVEQHNSAVEEAVSAANGHESQSGVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0003870 | OsLiXu_02g0003870.03 | Chr02 | 2803015 | 2806781 | + | NAM | ||
| CDS seq | atgagcggccaccacgaagctaagccctaccagccccgccgcggcccggctcccgccgacgaggaggccgcccccgccgctgcggcggacgaggcggaggcggaggcggaggtggaggctatggagcggtacgagcaggagcaggagtacgaggagggggaggagggggaggaggaggagtacgagggcggggagggggtccccatggacgccgacgcctccgccgcggccgtggcggggatggacccgcacggggagatggtgcccgtggccggcggggaggcgggcggcggctacccgcacgtggcgtcgaacaccctcacgctgtcgttccagggcgaggtctacgtcttcgagtccgtttccgccgagagggtgcaagctgtgctgttactgcttggaggaagagagctagcaccagggtcgggttcggtaccatcatcttcagcggcatacagtaagaagatgaattttcctcaccggatggcatcattgatgaggttccgggaaaagagaaaagagagaaactttgataagaagatccggtatactgttaggaaggaagttgcacttaggatgcagcgtaatagaggccagtttacatcatcaaaatcgaaggctgaagaagcaacatccgccataactagttcggaaggttcgccaaattggggcgcagttgaaggtcgacctccatcagctgctgagtgccatcattgtggtattagtgcagcgtcaacacctatgatgcgccgtggtcctgatggcccaagaacattgtgcaatgcatgtggacttatgtgggcaaacaagggtacgatgagagaggtaacaaaaggtccccctgtgcccttgcaaattgtgccagctgcaaccaatgatgttaacggaatcgtcgaggcaacaggtgtcgagcagcacaattctgcagtcgaggaggcagtttctgctgcaaatggccatgaatcgcagtcgggagtcgcgtga
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| Protein seq | MSGHHEAKPYQPRRGPAPADEEAAPAAAADEAEAEAEVEAMERYEQEQEYEEGEEGEEEEYEGGEGVPMDADASAAAVAGMDPHGEMVPVAGGEAGGGYPHVASNTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELAPGSGSVPSSSAAYSKKMNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSAITSSEGSPNWGAVEGRPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPVPLQIVPAATNDVNGIVEATGVEQHNSAVEEAVSAANGHESQSGVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0003870 | OsLiXu_02g0003870.01 | Chr02 | 2803015 | 2806806 | + | NAM | ||
| CDS seq | atgagcggccaccacgaagctaagccctaccagccccgccgcggcccggctcccgccgacgaggaggccgcccccgccgctgcggcggacgaggcggaggcggaggcggaggtggaggctatggagcggtacgagcaggagcaggagtacgaggagggggaggagggggaggaggaggagtacgagggcggggagggggtccccatggacgccgacgcctccgccgcggccgtggcggggatggacccgcacggggagatggtgcccgtggccggcggggaggcgggcggcggctacccgcacgtggcgtcgaacaccctcacgctgtcgttccagggcgaggtctacgtcttcgagtccgtttccgccgagagggtgcaagctgtgctgttactgcttggaggaagagagctagcaccagggtcgggttcggtaccatcatcttcagcggcatacagtaagaagatgaattttcctcaccggatggcatcattgatgaggttccgggaaaagagaaaagagagaaactttgataagaagatccggtatactgttaggaaggaagttgcacttaggatgcagcgtaatagaggccagtttacatcatcaaaatcgaaggctgaagaagcaacatccgccataactagttcggaaggttcgccaaattggggcgcagttgaaggtcgacctccatcagctgctgagtgccatcattgtggtattagtgcagcgtcaacacctatgatgcgccgtggtcctgatggcccaagaacattgtgcaatgcatgtggacttatgtgggcaaacaagggtacgatgagagaggtaacaaaaggtccccctgtgcccttgcaaattgtgccagctgcaaccaatgatgttcagaacggaatcgtcgaggcaacaggtgtcgagcagcacaattctgcagtcgaggaggcagtttctgctgcaaatggccatgaatcgcagtcgggagtcgcgtga
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| Protein seq | MSGHHEAKPYQPRRGPAPADEEAAPAAAADEAEAEAEVEAMERYEQEQEYEEGEEGEEEEYEGGEGVPMDADASAAAVAGMDPHGEMVPVAGGEAGGGYPHVASNTLTLSFQGEVYVFESVSAERVQAVLLLLGGRELAPGSGSVPSSSAAYSKKMNFPHRMASLMRFREKRKERNFDKKIRYTVRKEVALRMQRNRGQFTSSKSKAEEATSAITSSEGSPNWGAVEGRPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPVPLQIVPAATNDVQNGIVEATGVEQHNSAVEEAVSAANGHESQSGVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 2806014 | 2806352 | + | OsLiXu_02g0003870.01 | OsLiXu_02g0003870.03,OsLiXu_02g0003870.01 | All |
| SE | Chr02 | 2805440 | 2806349 | + | OsLiXu_02g0003870.01 | OsLiXu_02g0003870.02,OsLiXu_02g0003870.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.811430 | 1.223374 | 2.784585 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0148500 | RBH | 2.818997 | 2.448816 | 5.755400 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05510 | RBH | 1.801237 | 1.556216 | 1.399860 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0148500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003730 | RBH | 1.498442 | 8.974859 | 2.868115 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003820 | RBH | 0.424799 | 5.465812 | 2.266979 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003760 | RBH | 1.436478 | 17.643398 | 10.160160 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003620 | RBH | 0.052565 | 0.542815 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003780 | RBH | 14.587133 | 15.256704 | 23.954090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0045300 | RBH | 10.911492 | 10.9393835 | 17.055271 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003710 | RBH | 0.501733 | 1.006576 | 2.189496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0047800 | RBH | 11.4836035 | 7.577707 | 18.8863275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003810 | RBH | 0.347016 | 0.165996 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003640 | RBH | 0.818652 | 2.072042 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003900 | RBH | 9.210985 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028100 | RBH | 1.056088 | 1.077529 | 1.130730 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003670 | RBH | 0.290604 | 6.794238 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003720 | RBH | 0.873495 | 5.301387 | 2.209311 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003670 | RBH | 2.299636 | 11.952521 | 9.695791 |
