Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0003350 | OGI:02007360 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:2379356-2383186 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtgccaaaagatcgtgagaattgtcaacacaacaacttggactctacaggttgggcgtagcaccatattatatatttcgtttctttttaagccttttgtattaagcacagttttgtgtgcaggcactcttgaagatgttacaaaactaagtgcggctgaactaaaaaggaagcgtgctagggagtggtacgcatcattggccaaagataaaaaggaagatagaaacaagaaggcacgtgatatcaggaagcggaggaactatgaatctcaaaggtttaaatctctactgttgtgttgccttctgcttcaccgtgacaagctctgttagatgtgatgggtaccacctataggggctctgctacagcgatggttcttcttgctcattgtccaatcctctttcaaattgccctcttgatcaggtaattaggtactgtactatcttaactaatcgatttgcttttatctatgctttccttcatctggttttgcttctgtttaaaggtgtgagtaattgaactgatgaactttgcccttgttatcctcgtccactgttcatgatgtgttggaattgtaacattttcattttatttcacattgacagcatgaaactaactttctactggattccacttgtggtgtcagtgggagaagatatatgcttaggacttcattgagattaatctagaagatatatttggactacaccatatgtttacgtgcagctgtcatgtatggtgacctttaatttggatttatttatgatatctttagttcttagccgtgaaagacattatggtatgtttatttgctgtaaaaaaaaggcaattatttgtgaagtgtaaagttaagtttggacactttatgcaattatctgtgtagcacatgcacatacctgtttgtgtttttacatctatgcacatgcaatacaccgaaatactttgatacaattttgttgagggtgatgcattggttcagaaattcaattctggccgtgtgcaggaattagagataatctatatatgaacttgcagttgtagaggtacactgaccaaacaaattgttattgaagagaaaaaaatatctaaggtttcactgaatatttcaaacgaattgtatatttcctgtgtacccctaaaaactcactcaatactttctgtacccctgaaatttacctaatcccttctatacccctgaaatttcaacttgatcccttccatgcccctaccgttacattttccatcatttcactattacgtttggttacaaatgacctttttgcccttgatgctttaggtttgaatataaccttcaaaaacaattgaaaaTtttgtttgagtgcgcagtatgtgcattttatgaaactaatgagactaaataattagtgcagaaaattttgacataaattttgaaaataaaacaaaagtaataaattgaagtttttatttgaaattttaataggacaatggattttttttatcgggagcattcataaaaccattattgtgaacattggtcctatatttgtatgaatgctcctcattttttatgattttttttaaaataaatacatattttttatttcattatataaaaataattttggggataaataatgcatcgcacaacaaactcataactattaatagtctcatgcgagaaacttttatatttttaataatgtaattcataaatttatatattcatccgaagggtaaaatggtcatttttatagaaattagacggtcaactaacggtcaactgacgggaggggtatggaagggatcaaaatcaaattttgggtgtatacaaggaagtaagtgaaattcaggggtatagaagggattagcttaatttccaggggtatacaagggattttctctatattctaagcctccatgcgagataagagttaaggatcttgtgacctactttttgcgagcacttcttggatgccctaatattaatattatgtgttgcttagtgcctttaaggagaaccgaagcaatgctaggctcagtgtgtggcgtattgtagcatatagagatgtgttcgtaccacggaaatgataagacattttaaggatgttttttattaatcaaataataaatctactatttatatattttgcctacatttattttcttgaatatataatttataatttagaggcaatggtaagtcatatatatgtttcttgatatcattcatctgtcatgtatgcttctatataaatgtttgatttatgttactacatatcaccgtagcgttagcacggacatgctactactagtagattgttaagttttggaggggttattgatgcagaaatgcaggatgtgtggcaaagtaaagtgcctcttaagattaaacactttgtcttctttgctttaagagggagaattcctttaccctactttttagggtttgcagttttacccccactttttgaaatctgaagcagccgtctaccctcacttgtgatagccgtttggtgggtcccatgttgtgcgttaaagaaatactaaaggaaataaaaaaaaggttttaggaattgtgatatttcctttgtacccttgagggaatggatatggttgaccagttgagtgagtctcccaccccgtgcgtcactttgcaggccgggggcgccggcggctgcggcaagggcggcgagggcggcgcggcgcggaggtggcggccgtgggcgcgcacgaggcggcggcggcgagggcgtgcgacgcggtggcggcgacgagggcgcgcgcgcggcgcggaggcggcggccatgggcgcacgcgcgaggctgcgtcggcggacgcgagcgtgccgtgcgcgaggcggcggcggctgcgggcgcgccgtgcgcgagcggccgagggcgtgcgccggcgcccgctcccaggaggtgcacagccgtgctggcggcggcggctgccgcgtagagatttgctgtttcaatttgatgagcaaaatggctttgtatcgacatagtttcagaaatggatcgctaaatgttacttggtatttggtattttgttgatatgcacatgcttgagaatatgcacaaaggcgcacattatatgatttatacaccagttgatcctcttctgttcgttgcagtgaaggtacgttgattgttgttcaacttgttgagacattccaagctaaacttaagacattgtgcctgaaaacatacgccctttgtgcattataaagatggcgagtgacaaaataggggcaaaatcacacaaagctgaaaacaatagggcaaaaatgcaataaccatcgagggtataaatgtccttttctctacaactaacaccgttagaataggctgttagaagtggggtacatagctgctttagatttaaaaagtaaagataaaactgcagaccctaaaaaaagtgagggtaaaacagtaattgactttgaaagtggggggcactgatgcaattgccccaggagaaatgggatggcgcggggggggggggggggggggttgatgaattagagtctgtgggcttggatttggttcctgggaatttggggatgctttgcacttgctaaaaagaaattgggaagggtcttgggcgtgtttgtagttgcggcgtgtatttggacgatttggctcactaggtgtgtatttggacgatttggcttactaggaatgactgggttttttgaaaacattttggtcaaatctcctttgcaggtggtgtacaaggttgttgctatgatgcaaagatggaaagagttgctaaaggagggcgatcgagggcaagtcgataagtggaaggaagtgatcctggagaatttggcgcgacttcggtag
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| CDS seq | atgtgccaaaagatcgtgagaattgtcaacacaacaacttggactctacaggttgggcgtagcaccatattatatatttcgtttctttttaagccttttgtattaagcacagttttgtgtgcaggcactcttgaagatgttacaaaactaagtgcggctgaactaaaaaggaagcgtgctagggagtggtacgcatcattggccaaagataaaaaggaagatagaaacaagaaggcacgtgatatcaggaagcggaggaactatgaatctcaaagccgtgaaagacattatgaggcaatggtggtgtacaaggttgttgctatgatgcaaagatggaaagagttgctaaaggagggcgatcgagggcaagtcgataagtggaaggaagtgatcctggagaatttggcgcgacttcggtag
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| Protein seq | MCQKIVRIVNTTTWTLQVGRSTILYISFLFKPFVLSTVLCAGTLEDVTKLSAAELKRKRAREWYASLAKDKKEDRNKKARDIRKRRNYESQSRERHYEAMVVYKVVAMMQRWKELLKEGDRGQVDKWKEVILENLARLR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0003350 | OsLiXu_02g0003350.01 | Chr02 | 2379356 | 2383186 | + | NAM | ||
| CDS seq | atgtgccaaaagatcgtgagaattgtcaacacaacaacttggactctacaggttgggcgtagcaccatattatatatttcgtttctttttaagccttttgtattaagcacagttttgtgtgcaggcactcttgaagatgttacaaaactaagtgcggctgaactaaaaaggaagcgtgctagggagtggtacgcatcattggccaaagataaaaaggaagatagaaacaagaaggcacgtgatatcaggaagcggaggaactatgaatctcaaagccgtgaaagacattatgaggcaatggtggtgtacaaggttgttgctatgatgcaaagatggaaagagttgctaaaggagggcgatcgagggcaagtcgataagtggaaggaagtgatcctggagaatttggcgcgacttcggtag
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| Protein seq | MCQKIVRIVNTTTWTLQVGRSTILYISFLFKPFVLSTVLCAGTLEDVTKLSAAELKRKRAREWYASLAKDKKEDRNKKARDIRKRRNYESQSRERHYEAMVVYKVVAMMQRWKELLKEGDRGQVDKWKEVILENLARLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0480200 | SBH | 1.289702 | 1.089188 | 2.803492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0480200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017190 | SBH | 0.207696 | 0.0 | 3.893564 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003280 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0039600 | RBH | 0 | 0 | 0.028289 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003310 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017320 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015030 | SBH | 1.050407 | 0.000000 | 3.963372 |
