Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0003060 | OGI:02006830 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:2124898-2127323 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catgtaattaagctcaaaattacaccgaaattaattaattaataaatccgatgatttgattcagatttgagaacgaggaaggaatcaaagaaagaaggaagaaagaatacatagcggagctcttttaatccaatttttcatccaatactcgcgaggaagaagaaatgaaaagaaaaaaaagaagaaagaaagcaaaaaaaaaaaaaaatcaagaagcaaaattactacagggagatcgaggtattatactggcgggcgccgctcgatccgccggcggcgactagttgtacggcttcaccggcggcggcggcgacgcgtacgacacgccgtacaccggcgggaacgggagcttcccgccgggcggcgttgacgtcgacggcgggtgtccaccaccgtggccgccgccggtgctgctaccgtgagacggcggcgagcagttgtgcggcgtcggcggcgggtggaagcttggccccgatggcgatggcggggtggatggatgcgagtgcgatggtggcgtggtggtcggggtccccgctcccggcacgtgctgcgtcggcggcgacgcgccgggctggcccgacggcggctggtagccggaggaaggcgacggcggcgagccggaggacggaggggtcgaggggatggggccgtacgagccaggcggcggcgcgaaccgcacgtctggtctgtcggccgaggtcggcggaggaggcgtgtatgtcaccggcggcgaagggtaggacggatgagtaggcgtgctctgcggcggcgagtgggacggcggagcggtggagctcgacggcggtgacgggtgtgatggggtggtgtggccctgcggcggcgagtggtaggacggggtcgtggagctcgacggcggcgaggggtaggacggagtggtggatcccggcggcgaggggtgcgacggtgtactgggcttgccaccattgggcgacgggtaggacggtgtggtcgagctcgagccccccggcggcgagtgggacgacggtgtggtggcgctggatggcggcgacgggtaggacggggtgttcgaccccggtggcgccgggtaggacgacgacggcgaggggtatgacggggtaggagagctcgatggcggctgcgggtacggacctctgcgccgtggcggcgagctcaccggcgccggtggcccttggccaccacgtccagggctaccaccgggcgtcggggtgtaggacgcggcctggcattgcgccttgctgcagtcgaacgggtgcgccgcagcggcggcgcactgcgacggcggccgctgccccggcgcgccggggatgcagttccacacgccgtcggcggtggccacgccgcagcccgggcgcgaggtgatgaagttgtccgtgtaggtgaagttcttgaggctggcgaggccgcagacgccggccggcacggccccctcgaagaggttcctggcgacgtcgagctgctcgacggcggccatcccggcaacgctcgccgggatcgggccctgcaggtggttgtcgctgacgtcgaacaccgtcaccttcctgagcagccccacctgcgtggggacgcagccggtgagctcgtcggcgatgagcacgatctcgttgagcgtgtccgccatcttgccgatggacggcgggatgcatcccccgaggttgttgtgcgcgagcacgacgacgctcgccggcgagttgccgaggttggccgggatggggttgcggaggcggttggagttgaggaagatggcgtcgagcgggcggtcgaacagcgcgggcgggatggagccctcgaagtcgttgaacctgaggtcgaggtagcggagcgaggggagcgcgagcaccacctccgggaacgcgccgacgaagcggttgttgctgaggtcgagctcgtggagcaagcggaggcggcggaacgtgtcgggcacgacgccgcagaagcggttggagttgaggtggatgagggcgaggtcggggagccccagcgggagcgacgccggcaggtacccggcgatgtcggcgtggttgaggtcaatgccggcgacgacgagacctccacctccgccgccgccgtagccgggcgacggcgcgcagtagacgccgttgtaggcgcagacgttggcgccgacccagctggcggtgaagttggaggggtcggagaagatggccgtctgcttccacgcctggagcgcggcgtacgcggcgcggaggcgcgggttggggaacgcccacgacggcggcgcgtcgtaccgcgacgcgaacgacgccgcgtactcctccgacacgttgccctcgtgctgtgccaccgccgccccgagcagcagcagcagcagcgcccacgccgcggcggcgtggccgcgagagatcatcgtggaacgacgcggcggcgacaggagcttcgctagtgggaggcgagtgtgcagtgtgtgg
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| CDS seq | atgatctctcgcggccacgccgccgcggcgtgggcgctgctgctgctgctgctcggggcggcggtggcacagcacgagggcaacgtgtcggaggagtacgcggcgtcgttcgcgtcgcggtacgacgcgccgccgtcgtgggcgttccccaacccgcgcctccgcgccgcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttcaccgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccgtcgcccggctacggcggcggcggaggtggaggtctcgtcgtcgccggcattgacctcaaccacgccgacatcgccgggtacctgccggcgtcgctcccgctggggctccccgacctcgccctcatccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgcttgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgctcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcccgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgcaaccccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaacaacctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcgtgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaaggtgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccgggatggccgccgtcgagcagctcgacgtcgccaggaacctcttcgagggggccgtgccggccggcgtctgcggcctcgccagcctcaagaacttcacctacacggacaacttcatcacctcgcgcccgggctgcggcgtggccaccgccgacggcgtgtggaactgcatccccggcgcgccggggcagcggccgccgtcgcagtgcgccgccgctgcggcgcacccgttcgactgcagcaaggcgcaatgccaggccgcgtcctacaccccgacgcccggtggtagccctggacgtggtggccaagggccaccggcgccggtgagctcgccgccacggcgcagaggtccgtacccgcagccgccatcgagctctcctaccccgtcatacccctcgccgtcgtcgtcctacccggcgccaccggggtcgaacaccccgtcctacccgtcgccgccatccagcgccaccacaccgtcgtcccactcgccgccggggggctcgagctcgaccacaccgtcctacccgtcgcccaatggtggcaagcccagtacaccgtcgcacccctcgccgccgggatccaccactccgtcctacccctcgccgccgtcgagctccacgaccccgtcctaccactcgccgccgcagggccacaccaccccatcacacccgtcaccgccgtcgagctccaccgctccgccgtcccactcgccgccgcagagcacgcctactcatccgtcctacccttcgccgccggtgacatacacgcctcctccgccgacctcggccgacagaccagacgtgcggttcgcgccgccgcctggctcgtacggccccatcccctcgacccctccgtcctccggctcgccgccgtcgccttcctccggctaccagccgccgtcgggccagcccggcgcgtcgccgccgacgcagcacgtgccgggagcggggaccccgaccaccacgccaccatcgcactcgcatccatccaccccgccatcgccatcggggccaagcttccacccgccgccgacgccgcacaactgctcgccgccgtctcacggtagcagcaccggcggcggccacggtggtggacacccgccgtcgacgtcaacgccgcccggcgggaagctcccgttcccgccggtgtacggcgtgtcgtacgcgtcgccgccgccgccggtgaagccgtacaactag
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| Protein seq | MISRGHAAAAWALLLLLLGAAVAQHEGNVSEEYAASFASRYDAPPSWAFPNPRLRAAYAALQAWKQTAIFSDPSNFTASWVGANVCAYNGVYCAPSPGYGGGGGGGLVVAGIDLNHADIAGYLPASLPLGLPDLALIHLNSNRFCGVVPDTFRRLRLLHELDLSNNRFVGAFPEVVLALPSLRYLDLRFNDFEGSIPPALFDRPLDAIFLNSNRLRNPIPANLGNSPASVVVLAHNNLGGCIPPSIGKMADTLNEIVLIADELTGCVPTQVGLLRKVTVFDVSDNHLQGPIPASVAGMAAVEQLDVARNLFEGAVPAGVCGLASLKNFTYTDNFITSRPGCGVATADGVWNCIPGAPGQRPPSQCAAAAAHPFDCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASPPTQHVPGAGTPTTTPPSHSHPSTPPSPSGPSFHPPPTPHNCSPPSHGSSTGGGHGGGHPPSTSTPPGGKLPFPPVYGVSYASPPPPVKPYN |
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| Function | Leucine-rich repeat extensin-like protein 1 [UniProtKB/Swiss-Prot:O65375] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0003060 | OsLiXu_02g0003060.01 | Chr02 | 2124898 | 2127323 | - | NAM | ||
| CDS seq | atgatctctcgcggccacgccgccgcggcgtgggcgctgctgctgctgctgctcggggcggcggtggcacagcacgagggcaacgtgtcggaggagtacgcggcgtcgttcgcgtcgcggtacgacgcgccgccgtcgtgggcgttccccaacccgcgcctccgcgccgcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttcaccgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccgtcgcccggctacggcggcggcggaggtggaggtctcgtcgtcgccggcattgacctcaaccacgccgacatcgccgggtacctgccggcgtcgctcccgctggggctccccgacctcgccctcatccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgcttgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgctcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcccgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgcaaccccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaacaacctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcgtgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaaggtgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccgggatggccgccgtcgagcagctcgacgtcgccaggaacctcttcgagggggccgtgccggccggcgtctgcggcctcgccagcctcaagaacttcacctacacggacaacttcatcacctcgcgcccgggctgcggcgtggccaccgccgacggcgtgtggaactgcatccccggcgcgccggggcagcggccgccgtcgcagtgcgccgccgctgcggcgcacccgttcgactgcagcaaggcgcaatgccaggccgcgtcctacaccccgacgcccggtggtagccctggacgtggtggccaagggccaccggcgccggtgagctcgccgccacggcgcagaggtccgtacccgcagccgccatcgagctctcctaccccgtcatacccctcgccgtcgtcgtcctacccggcgccaccggggtcgaacaccccgtcctacccgtcgccgccatccagcgccaccacaccgtcgtcccactcgccgccggggggctcgagctcgaccacaccgtcctacccgtcgcccaatggtggcaagcccagtacaccgtcgcacccctcgccgccgggatccaccactccgtcctacccctcgccgccgtcgagctccacgaccccgtcctaccactcgccgccgcagggccacaccaccccatcacacccgtcaccgccgtcgagctccaccgctccgccgtcccactcgccgccgcagagcacgcctactcatccgtcctacccttcgccgccggtgacatacacgcctcctccgccgacctcggccgacagaccagacgtgcggttcgcgccgccgcctggctcgtacggccccatcccctcgacccctccgtcctccggctcgccgccgtcgccttcctccggctaccagccgccgtcgggccagcccggcgcgtcgccgccgacgcagcacgtgccgggagcggggaccccgaccaccacgccaccatcgcactcgcatccatccaccccgccatcgccatcggggccaagcttccacccgccgccgacgccgcacaactgctcgccgccgtctcacggtagcagcaccggcggcggccacggtggtggacacccgccgtcgacgtcaacgccgcccggcgggaagctcccgttcccgccggtgtacggcgtgtcgtacgcgtcgccgccgccgccggtgaagccgtacaactag
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| Protein seq | MISRGHAAAAWALLLLLLGAAVAQHEGNVSEEYAASFASRYDAPPSWAFPNPRLRAAYAALQAWKQTAIFSDPSNFTASWVGANVCAYNGVYCAPSPGYGGGGGGGLVVAGIDLNHADIAGYLPASLPLGLPDLALIHLNSNRFCGVVPDTFRRLRLLHELDLSNNRFVGAFPEVVLALPSLRYLDLRFNDFEGSIPPALFDRPLDAIFLNSNRLRNPIPANLGNSPASVVVLAHNNLGGCIPPSIGKMADTLNEIVLIADELTGCVPTQVGLLRKVTVFDVSDNHLQGPIPASVAGMAAVEQLDVARNLFEGAVPAGVCGLASLKNFTYTDNFITSRPGCGVATADGVWNCIPGAPGQRPPSQCAAAAAHPFDCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASPPTQHVPGAGTPTTTPPSHSHPSTPPSPSGPSFHPPPTPHNCSPPSHGSSTGGGHGGGHPPSTSTPPGGKLPFPPVYGVSYASPPPPVKPYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049563 | 1.762468 | 1.189614 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0138000 | RBH | 0.500705 | 0.410788 | 5.252542 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04540 | RBH | 0.327585 | 0.267299 | 1.333138 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0138000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002970 | RBH | 0.0 | 2.962221 | 6.643543 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003050 | RBH | 0.0 | 6.782423 | 1.073561 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002990 | RBH | 0.0 | 12.945082 | 4.753829 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002960 | RBH | 0.0 | 1.343683 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002990 | RBH | 0.0 | 79.818581 | 3.189188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0034100 | RBH | 0.3469805 | 1.568783 | 0.806957 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002900 | RBH | 0.0 | 2.478479 | 0.528523 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0035200 | RBH | 0.3919685 | 0.1327005 | 1.956482 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002970 | RBH | 0.0 | 0.623691 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002900 | RBH | 0.0 | 28.998823 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002970 | RBH | 0.0 | 44.641392 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028600 | RBH | 0.0 | 0.248287 | 0.239031 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003020 | RBH | 0.0 | 22.070593 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003000 | RBH | 0.0 | 12.534790 | 4.786129 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002940 | RBH | 0.0 | 11.024117 | 3.647402 |
