Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0001650 | OGI:02004210 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:1192289-1193359 | ||||||||
| Gene Symbol | LRT2, CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti | ||||||||||
| DNA seq | acgcagcgatctgaagtgaaacagcaaaaaaaatcaaacaaaaAGgaaaaatattccccatctgtgaaattcgcaaaaccctagcgcggcggcgatgtcgaacacgagggtgttcttcgacatgaccgtcggcggagctccggcggggcggatcgtgatggagctgtacgcgaaggacgtgccgcggacggcggagaacttccgcgcgctctgcaccggcgagaagggcgtgggcaagagcggcaagccgctgcactacaaggggagcaccttccaccgcgtgatcccggagttcatgtgccagggcggcgacttcacccgcggcaacggcacgggaggggagtcgatctacggcgagaagttcgccgacgaggtgttcaagttcaagcacgacagccccggcatcctgtccatggcgaacgccgggcccaacactaacgggtcccagttcttcatctgcaccgtgccctgcagctggctggacgggaagcacgtcgtgttcggccgcgtcgtcgagggcatggacgtcgtcaaggccatcgagaaggtgggatcccgcggcgggagcaccgccaagccggtcgtcatcgccgactgcggccagctctcctagatctgtgctgttccccttcgcctttcgccagtatcagtcgtcttgagtcgtcgagtccctaaataaggaggaggtggtggtggtgttagtctttttatgagttcgtgtcgtgttggtgagatgagatcgcccatggtttggttggattaggcggagttcttggatcgattcggtggagttggatctgcgatccttcttggggttggttttaaatcttaattcgtgtcgctgcttctatgatatcgctatcaatcaatgagaacatttgggatccgtggattttctgtgatcttacacctgtgtggttgtttgttcttgcgacagtactaacgttcttgcgattaaagtagattaaactatcttcgtgagatgagcggtttgtcgccgcgtgatgcctgactttgatgtgatttgtgggacttcgtcttatccatttggttattatTAtttttttattt
More
|
||||||||||
| CDS seq | atgtcgaacacgagggtgttcttcgacatgaccgtcggcggagctccggcggggcggatcgtgatggagctgtacgcgaaggacgtgccgcggacggcggagaacttccgcgcgctctgcaccggcgagaagggcgtgggcaagagcggcaagccgctgcactacaaggggagcaccttccaccgcgtgatcccggagttcatgtgccagggcggcgacttcacccgcggcaacggcacgggaggggagtcgatctacggcgagaagttcgccgacgaggtgttcaagttcaagcacgacagccccggcatcctgtccatggcgaacgccgggcccaacactaacgggtcccagttcttcatctgcaccgtgccctgcagctggctggacgggaagcacgtcgtgttcggccgcgtcgtcgagggcatggacgtcgtcaaggccatcgagaaggtgggatcccgcggcgggagcaccgccaagccggtcgtcatcgccgactgcggccagctctcctag
More
|
||||||||||
| Protein seq | MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS |
||||||||||
| Function | Peptidyl-prolyl cis-trans isomerase [UniProtKB/Swiss-Prot:P21569] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0001650 | OsLiXu_02g0001650.01 | Chr02 | 1192289 | 1193359 | + | NAM | ||
| CDS seq | atgtcgaacacgagggtgttcttcgacatgaccgtcggcggagctccggcggggcggatcgtgatggagctgtacgcgaaggacgtgccgcggacggcggagaacttccgcgcgctctgcaccggcgagaagggcgtgggcaagagcggcaagccgctgcactacaaggggagcaccttccaccgcgtgatcccggagttcatgtgccagggcggcgacttcacccgcggcaacggcacgggaggggagtcgatctacggcgagaagttcgccgacgaggtgttcaagttcaagcacgacagccccggcatcctgtccatggcgaacgccgggcccaacactaacgggtcccagttcttcatctgcaccgtgccctgcagctggctggacgggaagcacgtcgtgttcggccgcgtcgtcgagggcatggacgtcgtcaaggccatcgagaaggtgggatcccgcggcgggagcaccgccaagccggtcgtcatcgccgactgcggccagctctcctag
More
|
|||||||
| Protein seq | MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0001650 | OsLiXu_02g0001650.02 | Chr02 | 1192291 | 1193194 | + | IsoSeq | ||
| CDS seq | atgagttcgtgtcgtgttggtgagatgagatcgcccatggtttggttg |
|||||||
| Protein seq | MSSCRVGEMRSPMVWL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 75.259865 | 76.780640 | 100.927422 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0121300 | RBH | 241.524445 | 239.353790 | 574.959778 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02890 | RBH | 134.569290 | 132.742355 | 121.936455 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0121300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001590 | RBH | 91.830132 | 1247.843262 | 281.797455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001660 | RBH | 27.995598 | 164.675583 | 269.839661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001610 | RBH | 146.055176 | 671.529480 | 448.030884 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001590 | RBH | 23.940323 | 23.027107 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001620 | RBH | 962.465454 | 1052.908081 | 801.055237 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0018200 | RBH | 771.2272945 | 404.02417 | 203.2809145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001570 | RBH | 50.169292 | 74.393593 | 59.264416 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0018600 | RBH | 719.5516965 | 65.433609 | 1137.1032715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001580 | RBH | 35.797974 | 11.385351 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001530 | RBH | 88.982803 | 912.341431 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001590 | RBH | 320.857330 | 608.322510 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020410 | SBH | 0.0 | 0.0 | 1.527603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001650 | RBH | 22.708918 | 285.756317 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001620 | RBH | 116.664047 | 686.360596 | 320.601959 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001580 | RBH | 140.152786 | 744.951050 | 604.727966 |
