Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0001580 | OGI:02004140 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:1151043-1154249 | ||||||||
| Gene Symbol | TDR, tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5 | ||||||||||
| DNA seq | ggcaagcaaaagtttttccaacaaaagtggaaaaacactcgatagaagtatccacaattctagctagccacatttcagtcatcaagtcattatgcatatatgccattaatcacaaatactagacaactacttatcaaatccattattactagtacgtagcattatgtttctttctcgaataattcgagtgtgtatacactagtagtgagacgtagatggtaaaatcaatcatcatcatcaatcaaacgcgaggtaatgcaggtgctgatggtatccgccgccgacttcgtcgtggtagtgctctccaccggccgccgcctccgccgccgcagcctgcccgccgtcgccgccgtcgaacttggcgtcgtcctcctcctgcggcgacggccacacgccggggtacgtctcccgcgtcacctccagcagcgagtccctcaccctgtccgcctgcaccgccacctcgctgtccctcacctgcaatgcagaaaccaaccagctcggagtagtcagctcgcgagctcgcgttcatggccatggcggcggcgagcggggcgtactaccatgacgcggaagacgttgaggacgagggtcttgtaggtggtgacgttgacgttgatgacctcgaggccgagcgcgttcatggcgtccatgaggcggacgaacccgccgggcttgtgctcccagagcacctggacgaacagctcgttcccctgcacctgacgcacctccagctgcggctccatccggtgcccaccgccgccgccgccgccgaccttgtcgtcggtcattgctgggtccttgttactcctcctgctgctgctgccggaaacggcgagcggcggctgctgttggtggctgttgggcggcgaggcgtcgtcgttgtcgagcccgacgaggctcgccggcggcgggtggtcgatgagcacgtcgggcggcttatggtggacatggttgtcttccagctcgtcctgcagctccttcacctgcttctgcaaCcccacgatgtagtcgatcgcgtctccaagaatcgacgcgcgatccatctacgattcgttgcaaaatcaaacggaaatcgatttgaagaagcttttgatccgttcatggccatggcgatcgacgaggaggtaagataccttggtgatgtttgggacgagcgagcggagcttgtagaggtggccattgagcttcttcctccgcttcctctccgcctcgaggttcttgcactgctgcctcttggcgccgccggagcgcccctcgccgtcgccgtcgtcctccgggtcaccgccatgcagcttcctcccctccgacccggactccgccacgccgccgcccgccgcgtgctgcatctgctcctgcgccaccgccaccgacggctcgctcaccgccatccccgcgtacggccacgcgcccgccgccgccgccgcgtcgcccacggcgtcaccaccaccacccaagaacgggtcgtcgtcggcggcggcggcgtcgaacaggttcagcgacgagccgccgtacatcagcctctgcgcgtcggcgcctccgtcccactggaagctgggcgtctccggcggcggccacgcctgccccccaccgtcgtccccggcgccgccgccgccgcactgcgccatgacaagctccgccatctgctgctcctccgccatctgcaccaacaccgatcaacccacaaatctatataacccatccatgcaaaacgcaaaggccgttgcgtgcagctaaccgcaagctctccggcgttcgttggctcacgcggatggcgtgagccgccgccaccaccgccgccgccgcagccgcagccgcatcctctctaactactactcctctaaccaatcaaacgaccgaccactcacatatctcgacgcgaagagctcgacgaggccgccggcgacggggaccagcagccgcgtcttggcgccaccgccgccatcagcctcctcctcctcctgccacgcatccaagcaacacacctcatcagtgacagagattcatattcagattcagattcagattcagctactgggttcagtgatgaatcttgcttacactgctgctctgccagatcggctggttcgacagcaatgcctgcgcatgcatccttgatggatagtgacagagattcagattcaccaagcatacaaatgttcagagttactagacaagaaaccatcaattttgcaggtaatcagaacacgtatcgattgattgattaatcattcaatttaccctatggaggaggagtccagtgggattgaagaaggcaggtccagcagtgctgagacctgtgcttcaagctcactgctgcagcagaatcctgtcatctccaagaacctgccattaattttgtgttaatggttgtatatcactacagagataataaatcacaccgtaattgctactttgcatgcatgatatgatatgatatgccaagtaatcaatcacatacctctgatcaggagagagcctccagtagatgcagtaatcccagccatctgaaccaactagaggcctcaatgcagcatccaaactggtgccacctccattgacagcagctgcagctgcagcagcattgctgttcttcatcagcaggtggtctcctcttcccatgtgggtgatcctagtagtgacacatgaaagcaagaagaatggatgcaagtgtcagttgcagcattcacaaggcctgctttttcttgctgtcaggacaggataagttgatgtcaccaaggatacagcgaaaattcagggtatgatcacagcaagggaacaatcagattcagtctgaatattcatcagactaaagagacagatttagtctgaaaattcagtctatgttgaatcaaattttcagtaacttaaagagacagagatcaaagctgcattcttctggctcatcaggattgtatgtgaaatcttgtctagtgaatttttggaattaagcagagaaagaaagctaccttctgtcttcctgagatcgcttcaaactaactgacgaactgtggcagtgatcaacagatggaagagagaggcatcagctgatagctattggtaactgaagaatcattttgtacagaaggactattgcatcatgcatatatatagttcacatgtgtgtgttcctctgaatttagccatggctatctgatgatgtattgataccaagtcttcggaaatggctgtcaaattatgtatgatact
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| CDS seq | atgggaagaggagaccacctgctgatgaagaacagcaatgctgctgcagctgcagctgctgtcaatggaggtggcaccagtttggatgctgcattgaggcctctagttggttcagatggctgggattactgcatctactggaggctctctcctgatcagaggttcttggagatgacaggattctgctgcagcagtgagcttgaagcacaggtctcagcactgctggacctgccttcttcaatcccactggactcctcctccatagggatgcatgcgcaggcattgctgtcgaaccagccgatctggcagagcagcagtgaggaggaggaggctgatggcggcggtggcgccaagacgcggctgctggtccccgtcgccggcggcctcgtcgagctcttcgcgtcgagatatatggcggaggagcagcagatggcggagcttgtcatggcgcagtgcggcggcggcggcgccggggacgacggtggggggcaggcgtggccgccgccggagacgcccagcttccagtgggacggaggcgccgacgcgcagaggctgatgtacggcggctcgtcgctgaacctgttcgacgccgccgccgccgacgacgacccgttcttgggtggtggtggtgacgccgtgggcgacgcggcggcggcggcgggcgcgtggccgtacgcggggatggcggtgagcgagccgtcggtggcggtggcgcaggagcagatgcagcacgcggcgggcggcggcgtggcggagtccgggtcggaggggaggaagctgcatggcggtgacccggaggacgacggcgacggcgaggggcgctccggcggcgccaagaggcagcagtgcaagaacctcgaggcggagaggaagcggaggaagaagctcaatggccacctctacaagctccgctcgctcgtcccaaacatcaccaagatggatcgcgcgtcgattcttggagacgcgatcgactacatcgtgggGttgcagaagcaggtgaaggagctgcaggacgagctggaagacaaccatgtccaccataagccgcccgacgtgctcatcgaccacccgccgccggcgagcctcgtcgggctcgacaacgacgacgcctcgccgcccaacagccaccaacagcagccgccgctcgccgtttccggcagcagcagcaggaggagtaacaaggacccagcaatgaccgacgacaaggtcggcggcggcggcggcggtgggcaccggatggagccgcagctggaggtgcgtcaggtgcaggggaacgagctgttcgtccaggtgctctgggagcacaagcccggcgggttcgtccgcctcatggacgccatgaacgcgctcggcctcgaggtcatcaacgtcaacgtcaccacctacaagaccctcgtcctcaacgtcttccgcgtcatggtagtgagggacagcgaggtggcggtgcaggcggacagggtgagggactcgctgctggaggtgacgcgggagacgtaccccggcgtgtggccgtcgccgcaggaggaggacgacgccaagttcgacggcggcgacggcgggcaggctgcggcggcggaggcggcggccggtggagagcactaccacgacgaagtcggcggcggataccatcagcacctgcattacctcgcgtttgattga
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| Protein seq | MGRGDHLLMKNSNAAAAAAAVNGGGTSLDAALRPLVGSDGWDYCIYWRLSPDQRFLEMTGFCCSSELEAQVSALLDLPSSIPLDSSSIGMHAQALLSNQPIWQSSSEEEEADGGGGAKTRLLVPVAGGLVELFASRYMAEEQQMAELVMAQCGGGGAGDDGGGQAWPPPETPSFQWDGGADAQRLMYGGSSLNLFDAAAADDDPFLGGGGDAVGDAAAAAGAWPYAGMAVSEPSVAVAQEQMQHAAGGGVAESGSEGRKLHGGDPEDDGDGEGRSGGAKRQQCKNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDNHVHHKPPDVLIDHPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKVGGGGGGGHRMEPQLEVRQVQGNELFVQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTYKTLVLNVFRVMVVRDSEVAVQADRVRDSLLEVTRETYPGVWPSPQEEDDAKFDGGDGGQAAAAEAAAGGEHYHDEVGGGYHQHLHYLAFD |
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| Function | Transcription factor TDR [UniProtKB/Swiss-Prot:Q6YUS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0001580 | OsLiXu_02g0001580.01 | Chr02 | 1151043 | 1154249 | - | NAM | ||
| CDS seq | atgggaagaggagaccacctgctgatgaagaacagcaatgctgctgcagctgcagctgctgtcaatggaggtggcaccagtttggatgctgcattgaggcctctagttggttcagatggctgggattactgcatctactggaggctctctcctgatcagaggttcttggagatgacaggattctgctgcagcagtgagcttgaagcacaggtctcagcactgctggacctgccttcttcaatcccactggactcctcctccatagggatgcatgcgcaggcattgctgtcgaaccagccgatctggcagagcagcagtgaggaggaggaggctgatggcggcggtggcgccaagacgcggctgctggtccccgtcgccggcggcctcgtcgagctcttcgcgtcgagatatatggcggaggagcagcagatggcggagcttgtcatggcgcagtgcggcggcggcggcgccggggacgacggtggggggcaggcgtggccgccgccggagacgcccagcttccagtgggacggaggcgccgacgcgcagaggctgatgtacggcggctcgtcgctgaacctgttcgacgccgccgccgccgacgacgacccgttcttgggtggtggtggtgacgccgtgggcgacgcggcggcggcggcgggcgcgtggccgtacgcggggatggcggtgagcgagccgtcggtggcggtggcgcaggagcagatgcagcacgcggcgggcggcggcgtggcggagtccgggtcggaggggaggaagctgcatggcggtgacccggaggacgacggcgacggcgaggggcgctccggcggcgccaagaggcagcagtgcaagaacctcgaggcggagaggaagcggaggaagaagctcaatggccacctctacaagctccgctcgctcgtcccaaacatcaccaagatggatcgcgcgtcgattcttggagacgcgatcgactacatcgtgggGttgcagaagcaggtgaaggagctgcaggacgagctggaagacaaccatgtccaccataagccgcccgacgtgctcatcgaccacccgccgccggcgagcctcgtcgggctcgacaacgacgacgcctcgccgcccaacagccaccaacagcagccgccgctcgccgtttccggcagcagcagcaggaggagtaacaaggacccagcaatgaccgacgacaaggtcggcggcggcggcggcggtgggcaccggatggagccgcagctggaggtgcgtcaggtgcaggggaacgagctgttcgtccaggtgctctgggagcacaagcccggcgggttcgtccgcctcatggacgccatgaacgcgctcggcctcgaggtcatcaacgtcaacgtcaccacctacaagaccctcgtcctcaacgtcttccgcgtcatggtagtgagggacagcgaggtggcggtgcaggcggacagggtgagggactcgctgctggaggtgacgcgggagacgtaccccggcgtgtggccgtcgccgcaggaggaggacgacgccaagttcgacggcggcgacggcgggcaggctgcggcggcggaggcggcggccggtggagagcactaccacgacgaagtcggcggcggataccatcagcacctgcattacctcgcgtttgattga
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| Protein seq | MGRGDHLLMKNSNAAAAAAAVNGGGTSLDAALRPLVGSDGWDYCIYWRLSPDQRFLEMTGFCCSSELEAQVSALLDLPSSIPLDSSSIGMHAQALLSNQPIWQSSSEEEEADGGGGAKTRLLVPVAGGLVELFASRYMAEEQQMAELVMAQCGGGGAGDDGGGQAWPPPETPSFQWDGGADAQRLMYGGSSLNLFDAAAADDDPFLGGGGDAVGDAAAAAGAWPYAGMAVSEPSVAVAQEQMQHAAGGGVAESGSEGRKLHGGDPEDDGDGEGRSGGAKRQQCKNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDNHVHHKPPDVLIDHPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKVGGGGGGGHRMEPQLEVRQVQGNELFVQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTYKTLVLNVFRVMVVRDSEVAVQADRVRDSLLEVTRETYPGVWPSPQEEDDAKFDGGDGGQAAAAEAAAGGEHYHDEVGGGYHQHLHYLAFD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.320421 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0120500 | RBH | 0.117208 | 0.120199 | 1.876955 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02820 | RBH | 0.076543 | 0.078071 | 0.453373 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0120500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001520 | RBH | 0.000000 | 0.0 | 6.433338 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001590 | RBH | 0.070252 | 0.0 | 1.335297 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001540 | RBH | 0.0 | 1.163602 | 7.484085 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001550 | RBH | 0.0 | 0.0 | 8.969724 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0017500 | RBH | 0.040452 | 0.08612 | 0.213095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001500 | RBH | 0.000000 | 0.0 | 0.398269 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0018000 | RBH | 0.0382515 | 0.0192975 | 1.128236 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001510 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001550 | RBH | 0.000000 | 0.0 | 3.444692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001510 | RBH | 0.220532 | 0.0 | 4.376785 |
