Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0046910 | OGI:01123980 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:43802072-43804183 | ||||||||
| Gene Symbol | EMP5, Os EMP5, OsEMP5 | ||||||||||
| DNA seq | atgattgacatgtatgccaagaaaggtgccttagtggaagctgccgcgctctttcggtcggtgcaagagcccaatgtggtcatgttcaacactatgattgccggtttttgtcgtactgagactgtaattggtaaggaagttgcaagtgaagcgctaactctgtattcagaggtgcagagtcgtggaatgcagcctactgagttcacattctctagtgtgttacgggcttgcaaccttgctggttaccttgaatttggaaaacaaatacatggccaagtgatcaagtacactttccaggaagatgatttcatcgggagtgcgcttattgacttgtacttcaactctggctgtatggaagatgggtttaggtgcttcagatccaGccccaagcatgatattgttacctggacagcaatggtttctgggtgtttcaaaatgaacttcatgagaaggctctgagtttgtttcatgaatctttaggtgctggattgaaaccagatctttttactatatctagtgtgatgaatgcatgcgcaagtttagctgttgcaagggctggtgagcagatccagtgctttgccacgaaatctggttttgaccggttcactgtcatggggaactcttgcgtgcatatgtatgctagatcaggggatgttgatgctgcaactcggaggtttcaggaaatggaatcacacgatgttgtctcttggtctgcagtgatatcatgccatgcacagcatggttgtgcaagggatgctttacatttttttgatgaaatggtggatgcaaaggtggtgccaaatgagatcacttttcttggtgtccttactgcctgtagccatggaggattggttgatgagggactcaggtaagccaattgtcgtttcttgtcagttcattattttcattagcaatacaactttatttatcaaaaagaaaaatatgttaatgcatttttcaagtttttgtgtttgggggcatgtaacctccttaccaatagttatactttcttctcatatgtcacttcctttgacattctcatgcaggtattatgaaactatgaataaggattatgggttgagtccaaccataaagcattgcacttgtgttgttgatctccttggacgagctgggagactagctgatgctgaggcttttataagaaattcaatcttccatgctgacccagtcatttggcggtctttgctggcctcatgtcgaattcatagagacctggagagaggtcaacttgtcgcgaatcggataatggaactagaacccacttcgtcagcgtcctatgtaattctttacaacatgtacctggatgctggggagctctcgttggcttcaaaaactagggatctgatgaaacagcgaggtgtgaagaaagaacctggcctgagttggatagaactgaagtgtggagttcactcttttgttgctggtgacaagtctcatccagagagcagtgcatatacacaaaactggaagagatgctttccaggatcgagaagttggcgaccactgatactgaaatctctaaaagggagcaaaatctgatgaattgccatagtgaaaaactagctgtggcattaggaatgattcacttgcctcagtcagcacctataagagtaatgaagaatctgagagtttgtcgtgattgccactcaacaatgaaactgatatcaaagagtgaaaacagagagatcatattgagagatccaattcgcttccatcactttagagatggttcatgttcttgcgctgattattggtagtgacccatacaatggtttataaaggaattattggattttgtacttttcaggctgccccagtaaggaaatgggacacttgggaagcgttgaatatgttcagaagagatgctaattggtatctgtcttggtttctggaaagagggcaatcagcataaacaattatttcttgggatctacttgacaacatggatcatgtttctgtaattagagacaccgatgatatactgtattgatctgcagcattcttttgttgttatctgactatagcttactagagtgattagctcaactaatgaagcttagagtgcttttgtagttttgtacaggcgaatga
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| CDS seq | atgattgacatgtatgccaagaaaggtgccttagtggaagctgccgcgctctttcggtcggtgcaagagcccaatgtggtcatgttcaacactatgattgccggtttttgtcgtactgagactgtaattggtaaggaagttgcaagtgaagcgctaactctgtattcagaggtgcagagtcgtggaatgcagcctactgagttcacattctctagtgtgttacgggcttgcaaccttgctggttaccttgaatttggaaaacaaatacatggccaagtgatcaagtacactttccaggaagatgatttcatcgggagtgcgcttattgacttgtacttcaactctggctgtatggaagatgggtttaggtgcttcagatccaGccccaagcatgatattgttacctggacagcaatggctctgagtttgtttcatgaatctttaggtgctggattgaaaccagatctttttactatatctagtgtgatgaatgcatgcgcaagtttagctgttgcaagggctggtgagcagatccagtgctttgccacgaaatctggttttgaccggttcactgtcatggggaactcttgcgtgcatatgtatgctagatcaggggatgttgatgctgcaactcggaggtttcaggaaatggaatcacacgatgttgtctcttggtctgcagtgatatcatgccatgcacagcatggttgtgcaagggatgctttacatttttttgatgaaatggtggatgcaaaggtggtgccaaatgagatcacttttcttggtgtccttactgcctgtagccatggaggattggttgatgagggactcaggtattatgaaactatgaataaggattatgggttgagtccaaccataaagcattgcacttgtgttgttgatctccttggacgagctgggagactagctgatgctgaggcttttataagaaattcaatcttccatgctgacccagtcatttggcggtctttgctggcctcatgtcgaattcatagagacctggagagaggtcaacttgtcgcgaatcggataatggaactagaacccacttcgtcagcgtcctatgtaattctttacaacatgtacctggatgctggggagctctcgttggcttcaaaaactagggatctgatgaaacagcgaggtgtgaagaaagaacctggcctgagttggatagaactgaagtgtggagttcactcttttgttgctggtgacaaagagcagtgcatatacacaaaactggaagagatgctttccaggatcgagaagttggcgaccactgatactgaaatctctaaaagggagcaaaatctgatgaattgccatagtgaaaaactagctgtggcattaggaatgattcacttgcctcagtcagcacctataagagtaatgaagaatctgagagtttgtcgtgattgccactcaacaatgaaactgatatcaaagagtgaaaacagagagatcatattgagagatccaattcgcttccatcactttagagatggcgaatga
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| Protein seq | MIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKEQCIYTKLEEMLSRIEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGE |
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| Function | Pentatricopeptide repeat-containing protein At3g13880 [UniProtKB/Swiss-Prot:Q9LRV9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0046910 | OsLiXu_01g0046910.01 | Chr01 | 43802072 | 43804183 | + | NAM | ||
| CDS seq | atgattgacatgtatgccaagaaaggtgccttagtggaagctgccgcgctctttcggtcggtgcaagagcccaatgtggtcatgttcaacactatgattgccggtttttgtcgtactgagactgtaattggtaaggaagttgcaagtgaagcgctaactctgtattcagaggtgcagagtcgtggaatgcagcctactgagttcacattctctagtgtgttacgggcttgcaaccttgctggttaccttgaatttggaaaacaaatacatggccaagtgatcaagtacactttccaggaagatgatttcatcgggagtgcgcttattgacttgtacttcaactctggctgtatggaagatgggtttaggtgcttcagatccaGccccaagcatgatattgttacctggacagcaatggctctgagtttgtttcatgaatctttaggtgctggattgaaaccagatctttttactatatctagtgtgatgaatgcatgcgcaagtttagctgttgcaagggctggtgagcagatccagtgctttgccacgaaatctggttttgaccggttcactgtcatggggaactcttgcgtgcatatgtatgctagatcaggggatgttgatgctgcaactcggaggtttcaggaaatggaatcacacgatgttgtctcttggtctgcagtgatatcatgccatgcacagcatggttgtgcaagggatgctttacatttttttgatgaaatggtggatgcaaaggtggtgccaaatgagatcacttttcttggtgtccttactgcctgtagccatggaggattggttgatgagggactcaggtattatgaaactatgaataaggattatgggttgagtccaaccataaagcattgcacttgtgttgttgatctccttggacgagctgggagactagctgatgctgaggcttttataagaaattcaatcttccatgctgacccagtcatttggcggtctttgctggcctcatgtcgaattcatagagacctggagagaggtcaacttgtcgcgaatcggataatggaactagaacccacttcgtcagcgtcctatgtaattctttacaacatgtacctggatgctggggagctctcgttggcttcaaaaactagggatctgatgaaacagcgaggtgtgaagaaagaacctggcctgagttggatagaactgaagtgtggagttcactcttttgttgctggtgacaaagagcagtgcatatacacaaaactggaagagatgctttccaggatcgagaagttggcgaccactgatactgaaatctctaaaagggagcaaaatctgatgaattgccatagtgaaaaactagctgtggcattaggaatgattcacttgcctcagtcagcacctataagagtaatgaagaatctgagagtttgtcgtgattgccactcaacaatgaaactgatatcaaagagtgaaaacagagagatcatattgagagatccaattcgcttccatcactttagagatggcgaatga
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| Protein seq | MIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKEQCIYTKLEEMLSRIEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0959600 | RBH | 0.291109 | 0.565720 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72930 | RBH | 0.175828 | 0.418258 | 0.054528 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0959600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047750 | RBH | 0.000000 | 0.0 | 0.339876 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047240 | RBH | 0.000000 | 0.0 | 0.227968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047730 | RBH | 0.0 | 0.0 | 0.080642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047120 | RBH | 0.0 | 0.021074 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046660 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0693300 | RBH | 0.353433 | 0.722419 | 0.2737295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046160 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0694700 | RBH | 0.3676625 | 0.620927 | 1.350338 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046590 | RBH | 0.000000 | 1.079331 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0004090 | RBH | 0.098781 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046690 | RBH | 0.0 | 0.0 | 0.0 |
