Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0046710 | OGI:01123630 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:43695369-43698824 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgacgcctatcgcgttactgctgttcgtgctggtggtggcggcggcggctgacagtacgatgccgatgccggtgaacgaggaggtgctggggctggtggtgttcaagtcggcgctgtcggacccctccggcgcgctggcgacgtggacggagtccgacgcgacgccgtgcgggtgggcgcacgtggagtgcgacccggcgacgtcgcgcgtgctccgcctcgcgctcgacgggctcggcctctccggccgcatgccgcgggggctcgaccgcctcgccgcgctccagtcgctctccgtcgcccgcaacaacctctccggcgagctccccccggggctctccctgctcgcctcgctccgctccatcgacctctcctacaacgccttctccggcccgctccccggcgacgtcccgctcctcgcctccctccgctacctcgacctcaccggcaatgccttctccggcccgctgcccgccacgttccccgccaccgtccgcttcctcatgctctccggcaaccagttctccggcccgctgccgcagggcctctccaagagctccttcctgctccacctcaacctgtccgggaaccagctctccggctcgccggacttcgccggcgcgctctggccgctctcgcgcctgcgcgccctcgacctctcccgcaaccagttctccggcaccgtcaccaccggcattgccaacctccacaacctcaagaccatcgacctcagcggcaacaggttcttcggcgccgtcccgagcgacattggcctgtgccctcacctcagcaccgtcgacataagctccaacgcgttcgacggccagctccctgactctatcgcccatctcggctcgctcgtctacttcgccgcgtccggcaaccgcttctccggcgatgtccctgcttggcttggcgacttggcggcgcttcagcacctcgatttctccgacaatgcgctcaccggccgcttgccggactcgctcgggaagctcaaggacctcaggtacctgagcatgtcagagaaccagctctccggtgccatcccggacgccatgtccggctgcacgaagctcgccgagcttcacctgagggccaacaacctcagcggcagcatcccggatgcactgttcgacgtcgggctggagacgctcgacatgtcgtcgaacgcgctctcgggcgtcctgccgtcgggctcgacgaagctggcggagaccctgcaatggctcgacctctccgtcaaccagatcaccggcggcatcccggcggagatggcgctcttcatgaacctccgctacctcaacctgtcccgcaacgacctccgcacccagctgccgccggagctcggccttctccgcaacctcaccgtgctcgacctccgcagcagcggcttgtacgggacaatgccgagcgacctgtgcgaggccggcagcctcgccgtgctccagctcgacggcaactccctcgccggccccatccccgacaacatcggcaactgttcgtccctctacctactgtaagtcaacaaattgctaattacatttacaatatcgtcgttgcgttgaggttgaagacgaagacgacgaatcgcgtgacacgtttgatcgatgcatcgggtttgccatggcaggagcttggggcacaacagcttgacggggccgataccggtgggcatgtcggagctgaagaagctggagattctgaggctggagtacaacaacctgagcggcgagataccgcagcagctgggcgggatcgagagcctcctggcggtgaacgtctcgcacaaccgcctcgtaggccggctgccggcgtcgggcgtgttccagagcctcgacgcgagcgcgctggagggcaacctcggcatctgcagcccgctggtgacgcagccgtgcaggatgaacgtggccaagccgctcgtgctcgaccccaacgagtacccgcacggcggcgacggcgacaacaacctcgagaccagcggccgcggcccggcgtcgccgaggaaacggcggttcctgagcgtgtccgccatggtggccatctgcgcggcggtgttcatcatcctcggggtcatcgtcatcaccctgctcaacatgtcggcgcggcggagggccggcgacggcgggacgacgacgccggagaaggagCaggagagcatcgtgtcaagctcgaccaagtccagcaagctcgccacgggcaagatggtgacgttcgggccgggcaacagcctccgttccgaggacttcgtgggcggcgccgacgcgctgctgagcaaggcgacggagatcggccgcggcgtGTTCgggacggtgtaccgcgcgtccgtcggcgagggcagggtggtcgccatcaagaagctcgcgacggcgagcatcgtggagtcccgcgacgacttcgaccgcgaggtccgcatcctggggaaggcgaggcaccccaacctactccccctcaagggctactactggacgccgcagctccagctcctcatcaccgactacgcgccgcacggcagcctggaggcgcggctccacggcaacggcgacggcgcgttcccgccgctgacatgggcggagcggttccgcatcgtggccggcacggcgagggggctcgcgcacctgcaccagtcgttccggccgccgatgatccactacaacgtgaagccgagcaacatcctgctcgacgagcagtgcaacccgatggtcggcgacttcgggctggcgcggctgctgccgaagctggacaagcacgtgatgagcagccggttccagggcgggatggggtacgtggcgccggagctggcgtgccagagcctccggatcaacgagaagtgcgatatctacggcttcggcgtgctcatcctggagctcgtcacggggcggagggccgtcgagtacggcgacgacgacgtggtcatcctcatcgaccaggtccgcgtcctcctcgaccacggcggcggcagcaacgtgctggagtgcgtcgacccgagcatcggcgagttcccggaggaggaggtgctgccggtgctcaagctcgggatggtgtgcacgtcgcagatcccatccaaccgcccgtccatggccgaggtcgtccagatcctgcaggtcatcaaggcccccgtcgctgcatcgtcagccagaatcgaagctttctgaattctgatcgatctgacgacgccacatcattactcctactaaaccacagggttaatgattccaaatcatcgaatcgatcacttgcattgcattgcatgcatgcatccgcaagtactacgtgttccctagtgcaaaaattgaaaggtctgagcagtaggcagtaatagtagtacgtacaactgttcctgccgtgctaattttctcagggtcTttttttgtctctgcttttggatgtcagataaatctcattattattacgtggtgccttgttcgatctacacttctacagttctactacta
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| CDS seq | atggcgacgcctatcgcgttactgctgttcgtgctggtggtggcggcggcggctgacagtacgatgccgatgccggtgaacgaggaggtgctggggctggtggtgttcaagtcggcgctgtcggacccctccggcgcgctggcgacgtggacggagtccgacgcgacgccgtgcgggtgggcgcacgtggagtgcgacccggcgacgtcgcgcgtgctccgcctcgcgctcgacgggctcggcctctccggccgcatgccgcgggggctcgaccgcctcgccgcgctccagtcgctctccgtcgcccgcaacaacctctccggcgagctccccccggggctctccctgctcgcctcgctccgctccatcgacctctcctacaacgccttctccggcccgctccccggcgacgtcccgctcctcgcctccctccgctacctcgacctcaccggcaatgccttctccggcccgctgcccgccacgttccccgccaccgtccgcttcctcatgctctccggcaaccagttctccggcccgctgccgcagggcctctccaagagctccttcctgctccacctcaacctgtccgggaaccagctctccggctcgccggacttcgccggcgcgctctggccgctctcgcgcctgcgcgccctcgacctctcccgcaaccagttctccggcaccgtcaccaccggcattgccaacctccacaacctcaagaccatcgacctcagcggcaacaggttcttcggcgccgtcccgagcgacattggcctgtgccctcacctcagcaccgtcgacataagctccaacgcgttcgacggccagctccctgactctatcgcccatctcggctcgctcgtctacttcgccgcgtccggcaaccgcttctccggcgatgtccctgcttggcttggcgacttggcggcgcttcagcacctcgatttctccgacaatgcgctcaccggccgcttgccggactcgctcgggaagctcaaggacctcaggtacctgagcatgtcagagaaccagctctccggtgccatcccggacgccatgtccggctgcacgaagctcgccgagcttcacctgagggccaacaacctcagcggcagcatcccggatgcactgttcgacgtcgggctggagacgctcgacatgtcgtcgaacgcgctctcgggcgtcctgccgtcgggctcgacgaagctggcggagaccctgcaatggctcgacctctccgtcaaccagatcaccggcggcatcccggcggagatggcgctcttcatgaacctccgctacctcaacctgtcccgcaacgacctccgcacccagctgccgccggagctcggccttctccgcaacctcaccgtgctcgacctccgcagcagcggcttgtacgggacaatgccgagcgacctgtgcgaggccggcagcctcgccgtgctccagctcgacggcaactccctcgccggccccatccccgacaacatcggcaactgttcgtccctctacctactgagcttggggcacaacagcttgacggggccgataccggtgggcatgtcggagctgaagaagctggagattctgaggctggagtacaacaacctgagcggcgagataccgcagcagctgggcgggatcgagagcctcctggcggtgaacgtctcgcacaaccgcctcgtaggccggctgccggcgtcgggcgtgttccagagcctcgacgcgagcgcgctggagggcaacctcggcatctgcagcccgctggtgacgcagccgtgcaggatgaacgtggccaagccgctcgtgctcgaccccaacgagtacccgcacggcggcgacggcgacaacaacctcgagaccagcggccgcggcccggcgtcgccgaggaaacggcggttcctgagcgtgtccgccatggtggccatctgcgcggcggtgttcatcatcctcggggtcatcgtcatcaccctgctcaacatgtcggcgcggcggagggccggcgacggcgggacgacgacgccggagaaggagCaggagagcatcgtgtcaagctcgaccaagtccagcaagctcgccacgggcaagatggtgacgttcgggccgggcaacagcctccgttccgaggacttcgtgggcggcgccgacgcgctgctgagcaaggcgacggagatcggccgcggcgtGTTCgggacggtgtaccgcgcgtccgtcggcgagggcagggtggtcgccatcaagaagctcgcgacggcgagcatcgtggagtcccgcgacgacttcgaccgcgaggtccgcatcctggggaaggcgaggcaccccaacctactccccctcaagggctactactggacgccgcagctccagctcctcatcaccgactacgcgccgcacggcagcctggaggcgcggctccacggcaacggcgacggcgcgttcccgccgctgacatgggcggagcggttccgcatcgtggccggcacggcgagggggctcgcgcacctgcaccagtcgttccggccgccgatgatccactacaacgtgaagccgagcaacatcctgctcgacgagcagtgcaacccgatggtcggcgacttcgggctggcgcggctgctgccgaagctggacaagcacgtgatgagcagccggttccagggcgggatggggtacgtggcgccggagctggcgtgccagagcctccggatcaacgagaagtgcgatatctacggcttcggcgtgctcatcctggagctcgtcacggggcggagggccgtcgagtacggcgacgacgacgtggtcatcctcatcgaccaggtccgcgtcctcctcgaccacggcggcggcagcaacgtgctggagtgcgtcgacccgagcatcggcgagttcccggaggaggaggtgctgccggtgctcaagctcgggatggtgtgcacgtcgcagatcccatccaaccgcccgtccatggccgaggtcgtccagatcctgcaggtcatcaaggcccccgtcgctgcatcgtcagccagaatcgaagctttctga
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| Protein seq | MATPIALLLFVLVVAAAADSTMPMPVNEEVLGLVVFKSALSDPSGALATWTESDATPCGWAHVECDPATSRVLRLALDGLGLSGRMPRGLDRLAALQSLSVARNNLSGELPPGLSLLASLRSIDLSYNAFSGPLPGDVPLLASLRYLDLTGNAFSGPLPATFPATVRFLMLSGNQFSGPLPQGLSKSSFLLHLNLSGNQLSGSPDFAGALWPLSRLRALDLSRNQFSGTVTTGIANLHNLKTIDLSGNRFFGAVPSDIGLCPHLSTVDISSNAFDGQLPDSIAHLGSLVYFAASGNRFSGDVPAWLGDLAALQHLDFSDNALTGRLPDSLGKLKDLRYLSMSENQLSGAIPDAMSGCTKLAELHLRANNLSGSIPDALFDVGLETLDMSSNALSGVLPSGSTKLAETLQWLDLSVNQITGGIPAEMALFMNLRYLNLSRNDLRTQLPPELGLLRNLTVLDLRSSGLYGTMPSDLCEAGSLAVLQLDGNSLAGPIPDNIGNCSSLYLLSLGHNSLTGPIPVGMSELKKLEILRLEYNNLSGEIPQQLGGIESLLAVNVSHNRLVGRLPASGVFQSLDASALEGNLGICSPLVTQPCRMNVAKPLVLDPNEYPHGGDGDNNLETSGRGPASPRKRRFLSVSAMVAICAAVFIILGVIVITLLNMSARRRAGDGGTTTPEKEQESIVSSSTKSSKLATGKMVTFGPGNSLRSEDFVGGADALLSKATEIGRGVFGTVYRASVGEGRVVAIKKLATASIVESRDDFDREVRILGKARHPNLLPLKGYYWTPQLQLLITDYAPHGSLEARLHGNGDGAFPPLTWAERFRIVAGTARGLAHLHQSFRPPMIHYNVKPSNILLDEQCNPMVGDFGLARLLPKLDKHVMSSRFQGGMGYVAPELACQSLRINEKCDIYGFGVLILELVTGRRAVEYGDDDVVILIDQVRVLLDHGGGSNVLECVDPSIGEFPEEEVLPVLKLGMVCTSQIPSNRPSMAEVVQILQVIKAPVAASSARIEAF |
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| Function | Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [UniProtKB/Swiss-Prot:Q9LRT1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0046710 | OsLiXu_01g0046710.01 | Chr01 | 43695369 | 43698824 | + | NAM | ||
| CDS seq | atggcgacgcctatcgcgttactgctgttcgtgctggtggtggcggcggcggctgacagtacgatgccgatgccggtgaacgaggaggtgctggggctggtggtgttcaagtcggcgctgtcggacccctccggcgcgctggcgacgtggacggagtccgacgcgacgccgtgcgggtgggcgcacgtggagtgcgacccggcgacgtcgcgcgtgctccgcctcgcgctcgacgggctcggcctctccggccgcatgccgcgggggctcgaccgcctcgccgcgctccagtcgctctccgtcgcccgcaacaacctctccggcgagctccccccggggctctccctgctcgcctcgctccgctccatcgacctctcctacaacgccttctccggcccgctccccggcgacgtcccgctcctcgcctccctccgctacctcgacctcaccggcaatgccttctccggcccgctgcccgccacgttccccgccaccgtccgcttcctcatgctctccggcaaccagttctccggcccgctgccgcagggcctctccaagagctccttcctgctccacctcaacctgtccgggaaccagctctccggctcgccggacttcgccggcgcgctctggccgctctcgcgcctgcgcgccctcgacctctcccgcaaccagttctccggcaccgtcaccaccggcattgccaacctccacaacctcaagaccatcgacctcagcggcaacaggttcttcggcgccgtcccgagcgacattggcctgtgccctcacctcagcaccgtcgacataagctccaacgcgttcgacggccagctccctgactctatcgcccatctcggctcgctcgtctacttcgccgcgtccggcaaccgcttctccggcgatgtccctgcttggcttggcgacttggcggcgcttcagcacctcgatttctccgacaatgcgctcaccggccgcttgccggactcgctcgggaagctcaaggacctcaggtacctgagcatgtcagagaaccagctctccggtgccatcccggacgccatgtccggctgcacgaagctcgccgagcttcacctgagggccaacaacctcagcggcagcatcccggatgcactgttcgacgtcgggctggagacgctcgacatgtcgtcgaacgcgctctcgggcgtcctgccgtcgggctcgacgaagctggcggagaccctgcaatggctcgacctctccgtcaaccagatcaccggcggcatcccggcggagatggcgctcttcatgaacctccgctacctcaacctgtcccgcaacgacctccgcacccagctgccgccggagctcggccttctccgcaacctcaccgtgctcgacctccgcagcagcggcttgtacgggacaatgccgagcgacctgtgcgaggccggcagcctcgccgtgctccagctcgacggcaactccctcgccggccccatccccgacaacatcggcaactgttcgtccctctacctactgagcttggggcacaacagcttgacggggccgataccggtgggcatgtcggagctgaagaagctggagattctgaggctggagtacaacaacctgagcggcgagataccgcagcagctgggcgggatcgagagcctcctggcggtgaacgtctcgcacaaccgcctcgtaggccggctgccggcgtcgggcgtgttccagagcctcgacgcgagcgcgctggagggcaacctcggcatctgcagcccgctggtgacgcagccgtgcaggatgaacgtggccaagccgctcgtgctcgaccccaacgagtacccgcacggcggcgacggcgacaacaacctcgagaccagcggccgcggcccggcgtcgccgaggaaacggcggttcctgagcgtgtccgccatggtggccatctgcgcggcggtgttcatcatcctcggggtcatcgtcatcaccctgctcaacatgtcggcgcggcggagggccggcgacggcgggacgacgacgccggagaaggagCaggagagcatcgtgtcaagctcgaccaagtccagcaagctcgccacgggcaagatggtgacgttcgggccgggcaacagcctccgttccgaggacttcgtgggcggcgccgacgcgctgctgagcaaggcgacggagatcggccgcggcgtGTTCgggacggtgtaccgcgcgtccgtcggcgagggcagggtggtcgccatcaagaagctcgcgacggcgagcatcgtggagtcccgcgacgacttcgaccgcgaggtccgcatcctggggaaggcgaggcaccccaacctactccccctcaagggctactactggacgccgcagctccagctcctcatcaccgactacgcgccgcacggcagcctggaggcgcggctccacggcaacggcgacggcgcgttcccgccgctgacatgggcggagcggttccgcatcgtggccggcacggcgagggggctcgcgcacctgcaccagtcgttccggccgccgatgatccactacaacgtgaagccgagcaacatcctgctcgacgagcagtgcaacccgatggtcggcgacttcgggctggcgcggctgctgccgaagctggacaagcacgtgatgagcagccggttccagggcgggatggggtacgtggcgccggagctggcgtgccagagcctccggatcaacgagaagtgcgatatctacggcttcggcgtgctcatcctggagctcgtcacggggcggagggccgtcgagtacggcgacgacgacgtggtcatcctcatcgaccaggtccgcgtcctcctcgaccacggcggcggcagcaacgtgctggagtgcgtcgacccgagcatcggcgagttcccggaggaggaggtgctgccggtgctcaagctcgggatggtgtgcacgtcgcagatcccatccaaccgcccgtccatggccgaggtcgtccagatcctgcaggtcatcaaggcccccgtcgctgcatcgtcagccagaatcgaagctttctga
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| Protein seq | MATPIALLLFVLVVAAAADSTMPMPVNEEVLGLVVFKSALSDPSGALATWTESDATPCGWAHVECDPATSRVLRLALDGLGLSGRMPRGLDRLAALQSLSVARNNLSGELPPGLSLLASLRSIDLSYNAFSGPLPGDVPLLASLRYLDLTGNAFSGPLPATFPATVRFLMLSGNQFSGPLPQGLSKSSFLLHLNLSGNQLSGSPDFAGALWPLSRLRALDLSRNQFSGTVTTGIANLHNLKTIDLSGNRFFGAVPSDIGLCPHLSTVDISSNAFDGQLPDSIAHLGSLVYFAASGNRFSGDVPAWLGDLAALQHLDFSDNALTGRLPDSLGKLKDLRYLSMSENQLSGAIPDAMSGCTKLAELHLRANNLSGSIPDALFDVGLETLDMSSNALSGVLPSGSTKLAETLQWLDLSVNQITGGIPAEMALFMNLRYLNLSRNDLRTQLPPELGLLRNLTVLDLRSSGLYGTMPSDLCEAGSLAVLQLDGNSLAGPIPDNIGNCSSLYLLSLGHNSLTGPIPVGMSELKKLEILRLEYNNLSGEIPQQLGGIESLLAVNVSHNRLVGRLPASGVFQSLDASALEGNLGICSPLVTQPCRMNVAKPLVLDPNEYPHGGDGDNNLETSGRGPASPRKRRFLSVSAMVAICAAVFIILGVIVITLLNMSARRRAGDGGTTTPEKEQESIVSSSTKSSKLATGKMVTFGPGNSLRSEDFVGGADALLSKATEIGRGVFGTVYRASVGEGRVVAIKKLATASIVESRDDFDREVRILGKARHPNLLPLKGYYWTPQLQLLITDYAPHGSLEARLHGNGDGAFPPLTWAERFRIVAGTARGLAHLHQSFRPPMIHYNVKPSNILLDEQCNPMVGDFGLARLLPKLDKHVMSSRFQGGMGYVAPELACQSLRINEKCDIYGFGVLILELVTGRRAVEYGDDDVVILIDQVRVLLDHGGGSNVLECVDPSIGEFPEEEVLPVLKLGMVCTSQIPSNRPSMAEVVQILQVIKAPVAASSARIEAF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.570987 | 0.275535 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0957100 | RBH | 0.0 | 0.0 | 3.027731 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72700 | RBH | 0.0 | 0.0 | 0.711962 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0957100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047560 | RBH | 1.283925 | 27.468782 | 11.931639 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047050 | RBH | 0.0 | 4.600758 | 1.477775 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047520 | RBH | 1.377969 | 23.687788 | 11.968604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046930 | RBH | 0.0 | 0.536309 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046450 | RBH | 7.172562 | 41.338669 | 26.521933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0691500 | RBH | 5.692608 | 3.733455 | 4.2601915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045960 | RBH | 0.365129 | 2.785048 | 1.725320 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0693000 | RBH | 5.780112 | 0.1029705 | 10.162826 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046550 | RBH | 0.486148 | 0.093786 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046380 | RBH | 0.754905 | 13.362082 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046720 | RBH | 0.0 | 14.797292 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046480 | RBH | 0.0 | 7.030312 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046740 | RBH | 0.0 | 4.209529 | 2.401464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046520 | RBH | 1.482597 | 11.106987 | 8.855438 |
