Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0046420 | OGI:01102670 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:43489030-43490070 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgtggacaaggtcttggcttcttcttctttgacaaatgctatctgctttgcaatagaccagacatattcatcagccagttttcccaggtaataagcacgagaggtgctagatttattctcacttcgggtcgtcataagaacagcacttccaaggccacagcattcaagggaaattttcagcctgtcccatttttctgcattgaaacgggaaacaCcatccaatacaagcagaaactgcttcccacagagaacttctcggacatggagctgcaacaaagacgtaccctggattgatggaccaacaatcccttgcaaaattgtagtggtatcgaagtcttcagagaccgtcacccacaaacgcacagggaagtgctgctgaactatatcgtcgtcgtagaccatccgagctagcgtggtcttcccaatcccacccatccccactattgagacaaactgcagatcttcatcttcgcaaccaattagcatttgaatgactgatgacgcatccttgtcccttccaactggactaatttcacctaaaaaatcAggggggggATggaggtgctccctcaatcggagcgacgaattgagtatgggcggaaagatctcgtccatttcttctatagcgctcataactctgttaactctgtgaaccacatccgccagctcctcctgtagcgccacgtcgaattccttgctatgacgaggaataaccttgaggggatccaggacaccagagaaggtccgccgtacctttgtggctgtgccgcggcttccgatactctccgctcgcaggatctcacacctccagttctccagcagggcgtccgcatccgtcagtgctttcttgagctcgtatagccaaaaactcgcaagtccataatcggtggtggtgagatttgagaggtgcagccatggcccattgtccacaagccaaagcagtctgacatgaagagtccggcggtaagcctgaattgtggcatgcccatacctcctgaggactggatcaccagctttccaacccaccgaactgaccat
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| CDS seq | atggtcagttcggtgggttggaaagctggtgatccagtcctcaggaggtatgggcatgccacaattcaggcttaccgccggactcttcatgtcagactgctttggcttgtggacaatgggccatggctgcacctctcaaatctcaccaccaccgattatggacttgcgagtttttggctatacgagctcaagaaagcactgacggatgcggacgccctgctggagaactggaggtgtgagatcctgcgagcggagagtatcggaagccgcggcacagccacaaaggtacggcggaccttctctggtgtcctggatcccctcaaggttattcctcgtcatagcaaggaattcgacgtggcgctacaggaggagctggcggatgtggttcacagagttaacagagttatgagcgctatagaagaaatggacgagatctttccgcccatactcaattcgtcgctccgattgagggagcacctccATccccccccTgattttttaggtgaaattagtccagttggaagggacaaggatgcgtcatcagtcattcaaatgctaattggttgcgaagatgaagatctgcagtttgtctcaatagtggggatgggtgggattgggaagaccacgctagctcggatggtctacgacgacgatatagttcagcagcacttccctgtgcgtttgtgggtgacggtctctgaagacttcgataccactacaattttgcaagggattgttggtccatcaatccagggtacgtctttgttgcagctccatgtccgagaagttctctgtgggaagcagtttctgcttgtattggatgGtgtttcccgtttcaatgcagaaaaatgggacaggctgaaaatttcccttgaatgctgtggccttggaagtgctgttcttatgacgacccgaagtgagaataaatctagcacctctcgtgcttattacctgggaaaactggctgatgaatatgtctggtctattgcaaagcagatagcatttgtcaaagaagaagaagccaagaccttgtccacataa
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| Protein seq | MVSSVGWKAGDPVLRRYGHATIQAYRRTLHVRLLWLVDNGPWLHLSNLTTTDYGLASFWLYELKKALTDADALLENWRCEILRAESIGSRGTATKVRRTFSGVLDPLKVIPRHSKEFDVALQEELADVVHRVNRVMSAIEEMDEIFPPILNSSLRLREHLHPPPDFLGEISPVGRDKDASSVIQMLIGCEDEDLQFVSIVGMGGIGKTTLARMVYDDDIVQQHFPVRLWVTVSEDFDTTTILQGIVGPSIQGTSLLQLHVREVLCGKQFLLVLDGVSRFNAEKWDRLKISLECCGLGSAVLMTTRSENKSSTSRAYYLGKLADEYVWSIAKQIAFVKEEEAKTLST |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0046420 | OsLiXu_01g0046420.01 | Chr01 | 43489030 | 43490070 | - | NAM | ||
| CDS seq | atggtcagttcggtgggttggaaagctggtgatccagtcctcaggaggtatgggcatgccacaattcaggcttaccgccggactcttcatgtcagactgctttggcttgtggacaatgggccatggctgcacctctcaaatctcaccaccaccgattatggacttgcgagtttttggctatacgagctcaagaaagcactgacggatgcggacgccctgctggagaactggaggtgtgagatcctgcgagcggagagtatcggaagccgcggcacagccacaaaggtacggcggaccttctctggtgtcctggatcccctcaaggttattcctcgtcatagcaaggaattcgacgtggcgctacaggaggagctggcggatgtggttcacagagttaacagagttatgagcgctatagaagaaatggacgagatctttccgcccatactcaattcgtcgctccgattgagggagcacctccATccccccccTgattttttaggtgaaattagtccagttggaagggacaaggatgcgtcatcagtcattcaaatgctaattggttgcgaagatgaagatctgcagtttgtctcaatagtggggatgggtgggattgggaagaccacgctagctcggatggtctacgacgacgatatagttcagcagcacttccctgtgcgtttgtgggtgacggtctctgaagacttcgataccactacaattttgcaagggattgttggtccatcaatccagggtacgtctttgttgcagctccatgtccgagaagttctctgtgggaagcagtttctgcttgtattggatgGtgtttcccgtttcaatgcagaaaaatgggacaggctgaaaatttcccttgaatgctgtggccttggaagtgctgttcttatgacgacccgaagtgagaataaatctagcacctctcgtgcttattacctgggaaaactggctgatgaatatgtctggtctattgcaaagcagatagcatttgtcaaagaagaagaagccaagaccttgtccacataa
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| Protein seq | MVSSVGWKAGDPVLRRYGHATIQAYRRTLHVRLLWLVDNGPWLHLSNLTTTDYGLASFWLYELKKALTDADALLENWRCEILRAESIGSRGTATKVRRTFSGVLDPLKVIPRHSKEFDVALQEELADVVHRVNRVMSAIEEMDEIFPPILNSSLRLREHLHPPPDFLGEISPVGRDKDASSVIQMLIGCEDEDLQFVSIVGMGGIGKTTLARMVYDDDIVQQHFPVRLWVTVSEDFDTTTILQGIVGPSIQGTSLLQLHVREVLCGKQFLLVLDGVSRFNAEKWDRLKISLECCGLGSAVLMTTRSENKSSTSRAYYLGKLADEYVWSIAKQIAFVKEEEAKTLST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.221143 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0937400 | SBH | 1.284278 | 0.937975 | 3.034086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0358700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046200 | RBH | 0.989634 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0687000 | RBH | 1.673199 | 3.6331445 | 2.9619235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045710 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0689200 | RBH | 0.015481 | 0.0341835 | 0.0117355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016090 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046290 | RBH | 0.255479 | 4.368972 | 1.538222 |
