Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0042950 | OGI:01116200 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:40844208-40849408 | ||||||||
| Gene Symbol | RecA | ||||||||||
| DNA seq | ttgtatcatgggcatattgcagctttgtgttcaccaaaagcattcagtcccaaaacaatcgcacaggaatggaaccggaataatcaaatatcagaagcatttagtaagtgtatctcaagccagaaccgacgaGGaatcccAGatatgcgacatatatacatggttacattctactaataaccctttcaatgtctaaatagccaccatacaagtccatacgtaagccccccGgtccttccccggctctacctcacttcgctccaggcatttgacaactgaaggatgttcaaatacgaattccacacattctatatgcccGgtgcagccaaaatgacatctccaagaaccaaaatatgtatggttcagtggaataactgctcagcgcatattccttcttgttgatctatcatcactgattaagcatcactgattaagcttctattacagctgccagttCctcctcggaggatgtttcagtggcgagactctcttcaggcagatcactcaggaaatcaccttcatcctcctgctttttaggtgcttgagtttccatcaatttccttaaattcgtctccagttcttttgcgatactttcattttcgttgaggtaagatttaagggcatctttaccacgatatgactcttcgttgaaagaatAAaatgcaccacccaacTttttgacaagcttgtgctttaatccaagTtcaataagctctgaactgcggcatatccctttaccaaattccagctcAaactgtgctgtcttgaacggtggggcatgcttgtttttcacaatcttcacaagcacttgactacctatagtctgcaaacagaagtAaaaattgtcagtaacatttcaagaagcactacaatatgttgaagctaaatctgtaaggttactaggtctgtaattttgattgatgaggttataaaatcatatggctaaatacaaagcatgcatgtgccacgtgtctaacagtgttttGgagatgctatccaaatagatatgacgcaggagtgaaaaactaggttccaaagaaaccttgatatgggcatagcagtgcatatatgtcAagtattgactaactgtctaaataaggtAaatgtcaaggatatgacttggttaattacctcttcgcctttctttaccaaaccaatacgcttgatgttcattctaacGgaagcatagaatttaagggcatttccaccagaagtaacctccattggacctccaaatcctccaaatgtggtcactttagacctgatctataacacatacaaaggatgcaaataatatAaaactgagagaaatgaagcgaatagactgcattgattagtggggtacaaagtatttaaTttttttctgggacaggttgaatataagtctatagtaatgatgggacagaatgtattgaacgagtgttcaaatgatcactctgtgagaactcatgatcgacgaacaagattcaagtagaatcagttgcatcactgtaaacaaatgtctgaattgtacaataatgtttctgaaaataccatccttatttagctgtagtgtcacgtattttggagcttttcagctaataagctaatcatcatggaattaacagccttaagactagttaaatttgttccttcgcttcaccaaacaaaaacatgggatatataaattgaaaaaagcaaattcaacaaacactaagagcagtgcccagtgcacatgtttaatacctggttaatgaataacAaaattgtctgggaaagtgagagagagtggctcagcttgcgaagagcttggctcatcaatctagcctggagagcaacatgtgcatcacccatctccccgtcaagctcactcttagggacaagagctgctacctatgtcacaaaataAGatgcactgcttagcaaacttctcatataaatgaagttgtatttattaacgttgagtgtcgataagcatgttccAactgctaaTtggacattgttattAaaattttaagcagaaagtgcactattatcaatttgaaagaaggcaatgctccgaaaagaaaaataaaaatgggagggggatagatggtcaggttcttacactatcaacaacaacaacatcaacagagccgcttcgaatcagtgtgtccacaagactgagtgcctgctcgccacagtctggctgagagagAAGTaAattactggtgttgaccccaattgattcagccagagctggatctaaggcatgctctgcatctacgaaggcacaataacctagaaaaatagcaaaaacaaaaactcggtgaggtatatattaggttcgtccaaattctattttagatgaacttgcagttgtcagtgctcatgatttccagaccAaatggttcatggttttttgaaatgctccattaaattgcattacaggcagattttcccgagtaggttctgtgcgtgtttgaagaccaacattatttggtgaagctagtaatctagaagtatgaaggagcaaatAacaccttcatatttaaatgtttacactgaattaaactatataacctctgtgagctcaaaacatagcattccctaacccctctgagcgaacgaggacaaaagcccacgacaggtactttgcatatgtagcttatcccatggttgctgggctttgagctaatattgggctacacaatgtcagcatattccatgttctaaaacactaaaactggtttcgtcatattccattctccaaactccaaatataaagacactataatgctattggctattacacagataCCAAGctgcttggtaaaatacatagcgcaccgtgggggcctcccctgctgatgatgtcaacaaaatactcaatggtacaatattttgaacagacaagTttaagaactatgttcacatcataattagcaagatcactttcactgtcaagcagttgtaagccagcaaaacccttatgcatactacataaaaagcatctgactgactataccatcacaagttcacagcattaagcacatggtaataatttttatacgtattagatgttgttagcctaaatctttggattaaaggagaacacagaataatctgtaccttttctcatgtaaaatatatgctattgctaaaatatatAGattaggttcgaagtgctgatattaccgccatgcttttgtgcttctgcaataacgtgaagtgcaagagttgtcttgcctgaagcttctggaccatacacctctataacacgaccctacagagaacaatagcatgacattcatacaaaacaaagtatgttttgtccatgaaagaacatttgcacacttcatatgatgagagaagactaatttttagggtagttaacactcagcagaacttagatttgcaaagaatatcatgcaatacaaattaaacattgatacaagtgagattctacttacaagatattttgtaactacataggAatccttacctttggaagtccaccagttcccaatgccaaatccaaagagaaagacccagttgacacaacaggtacttctctacgaccttcagaacgaccaagccacattattgcgcccttcccaaatgcaaatgttatttgatcaatagcctggtgtagagccaagtctttctttgacagattctcttcaccagagtcagttccactggactttgtcttctttttggctaagtagatgattcaaaaagaataaatataagattcagtagatggcagcaataaaacataaatcaaaagAaaaaaaatcatgcagttcaatttcatcacaaattcacaatgtaacttatgtgtcaatacaggtaatatcaagatttaagatgatagcaactgagccatgggatgcagtatttagtatatctaaggtaaggTAtgcacataataaatcataaaaggaataagtgtctactacctttagacgagaaataccggcagtggaaagtagagccacagatcccttgcttatagctctgcacaaagattgatgcattagcAaaaccatatcaaggtttttatgtgaaagattaaacagcattgtttcattctcaaccggcatcatttaaagctaattatgaatacatatcttccagccgcattaatttcattatgcatactgtgcgtatcacaaatgatttcagtatttgttttgaagtgcacactatgagtgaatctcttccattctcatcaatttcattgtgcatactgtgtgtgtcacaaatgatccagtatttgtcttaagtgcatacaaatacctacaagtctgaaggtgcaaacaaatcgtgaggtcaggataaagatgacacggagatgtgttgcaacctcaagaaaacccctggaggctacactaatctaataacctaaatcacctttggtgttgcaggttaatctattgtaagcAaaaaatatatttatggcgcattaaaGggcatgtacaaatagtacagatgcttaggaaaaaaatcccttagcatctgttcaagagccttgatgtccaatagagaacacctattttacggacgctttagttatttcaggtgcttctccactccatttttcatgcaggcgctcgcaagcatcgactgtttcacttggcggcaagcacctcacgcagcaccagcgtggcaaaaatagacacagtttactcccctaagcatctgtccaagcacacagattgcacatagccttaataggcatttctccaaaatcccggattctaggtttgtagtacaaaataaggggaggggtaccctcagtgatcaaaatgggggtcattcggtggcacagagcaaatcgccgagggcatataagccgcgcggttcaccaaacgcaagcgatcaaaccccagcaaggatgccaaatcgcaatcacatatggcacaagctgccagtaggaacactccatggccaccaaggggggcaaaaaaaacacagtcAaatacggcggggagagaggaggggagtttcgacctcGgggcagggcgcggctgctgccgcgacggcggcgacggcgcgccgcagcgacgcgcgcctcaggaggttcgccatgtcgtcgtcgtcggcggcggcggcggcgacggcagcggcgacccctggaaccgtgcggcgaggaagagggtggggattgctagggtttagggtttttgccccctttttttgcggtggtttttgcccccttttaattctcggccgcc
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| CDS seq | atggcgaacctcctgaggcgcgcgtcgctgcggcgcgccgtcgccgccgtcgcggcagcagccgcgccctgcccCgagagctataagcaagggatctgtggctctactttccactgccggtatttctcgtctaaagccaaaaagaagacaaagtccagtggaactgactctggtgaagagaatctgtcaaagaaagacttggctctacaccaggctattgatcaaataacatttgcatttgggaagggcgcaataatgtggcttggtcgttctgaaggtcgtagagaagtacctgttgtgtcaactgggtctttctctttggatttggcattgggaactggtggacttccaaagggtcgtgttatagaggtgtatggtccagaagcttcaggcaagacaactcttgcacttcacgttattgcagaagcacaaaagcatggcggttattgtgccttcgtagatgcagagcatgccttagatccagctctggctgaatcaattggggtcaacaccagtaatTtACTTctctctcagccagactgtggcgagcaggcactcagtcttgtggacacactgattcgaagcggctctgttgatgttgttgttgttgatagtgtagcagctcttgtccctaagagtgagcttgacggggagatgggtgatgcacatgttgctctccaggctagattgatgagccaagctcttcgcaagctgagccactctctctcactttcccagacaatttTgttattcattaaccagatcaggtctaaagtgaccacatttggaggatttggaggtccaatggaggttacttctggtggaaatgcccttaaattctatgcttcCgttagaatgaacatcaagcgtattggtttggtaaagaaaggcgaagagactataggtagtcaagtgcttgtgaagattgtgaaaaacaagcatgccccaccgttcaagacagcacagttTgagctggaatttggtaaagggatatgccgcagttcagagcttattgaActtggattaaagcacaagcttgtcaaaaAgttgggtggtgcattTTattctttcaacgaagagtcatatcgtggtaaagatgcccttaaatcttacctcaacgaaaatgaaagtatcgcaaaagaactggagacgaatttaaggaaattgatggaaactcaagcacctaaaaagcaggaggatgaaggtgatttcctgagtgatctgcctgaagagagtctcgccactgaaacatcctccgaggagGaactggcagctgtaatagaagcttaa
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| Protein seq | MANLLRRASLRRAVAAVAAAAAPCPESYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGEENLSKKDLALHQAIDQITFAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNEESYRGKDALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAVIEA |
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| Function | DNA repair protein recA homolog 3, mitochondrial [UniProtKB/Swiss-Prot:Q9ZUP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0042950 | OsLiXu_01g0042950.01 | Chr01 | 40844208 | 40849408 | - | NAM | ||
| CDS seq | atggcgaacctcctgaggcgcgcgtcgctgcggcgcgccgtcgccgccgtcgcggcagcagccgcgccctgcccCgagagctataagcaagggatctgtggctctactttccactgccggtatttctcgtctaaagccaaaaagaagacaaagtccagtggaactgactctggtgaagagaatctgtcaaagaaagacttggctctacaccaggctattgatcaaataacatttgcatttgggaagggcgcaataatgtggcttggtcgttctgaaggtcgtagagaagtacctgttgtgtcaactgggtctttctctttggatttggcattgggaactggtggacttccaaagggtcgtgttatagaggtgtatggtccagaagcttcaggcaagacaactcttgcacttcacgttattgcagaagcacaaaagcatggcggttattgtgccttcgtagatgcagagcatgccttagatccagctctggctgaatcaattggggtcaacaccagtaatTtACTTctctctcagccagactgtggcgagcaggcactcagtcttgtggacacactgattcgaagcggctctgttgatgttgttgttgttgatagtgtagcagctcttgtccctaagagtgagcttgacggggagatgggtgatgcacatgttgctctccaggctagattgatgagccaagctcttcgcaagctgagccactctctctcactttcccagacaatttTgttattcattaaccagatcaggtctaaagtgaccacatttggaggatttggaggtccaatggaggttacttctggtggaaatgcccttaaattctatgcttcCgttagaatgaacatcaagcgtattggtttggtaaagaaaggcgaagagactataggtagtcaagtgcttgtgaagattgtgaaaaacaagcatgccccaccgttcaagacagcacagttTgagctggaatttggtaaagggatatgccgcagttcagagcttattgaActtggattaaagcacaagcttgtcaaaaAgttgggtggtgcattTTattctttcaacgaagagtcatatcgtggtaaagatgcccttaaatcttacctcaacgaaaatgaaagtatcgcaaaagaactggagacgaatttaaggaaattgatggaaactcaagcacctaaaaagcaggaggatgaaggtgatttcctgagtgatctgcctgaagagagtctcgccactgaaacatcctccgaggagGaactggcagctgtaatagaagcttaa
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| Protein seq | MANLLRRASLRRAVAAVAAAAAPCPESYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGEENLSKKDLALHQAIDQITFAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNEESYRGKDALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAVIEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.793519 | 0.904200 | 1.831168 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0901200 | RBH | 1.306856 | 0.857605 | 3.464024 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67510 | RBH | 0.965071 | 0.637397 | 0.985370 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0901200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043770 | RBH | 0.472299 | 9.844021 | 5.038484 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043350 | RBH | 0.067378 | 1.980848 | 1.374913 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043710 | RBH | 1.981927 | 1.190828 | 7.779058 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043160 | RBH | 0.152616 | 0.158056 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042750 | RBH | 1.675586 | 7.138647 | 4.423159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0646000 | RBH | 4.6482435 | 11.1923455 | 6.815852 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042390 | RBH | 0.551344 | 0.541283 | 0.515923 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0647100 | RBH | 3.406284 | 5.9995725 | 25.9044715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042720 | RBH | 0.140688 | 0.130235 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042660 | RBH | 0.463825 | 9.638433 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042960 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042740 | RBH | 0.176199 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043140 | RBH | 0.509135 | 6.090694 | 1.843742 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042860 | RBH | 1.505807 | 14.578604 | 4.595343 |
