Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0042410 | OGI:01024340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:40430227-40436254 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatgaatgcaaaacaggagattttggaaagcgaccagtaagtaaaaaaacagaaaaattttattctgtgtcaatttgtttcttttttttcttagatcatactctgtttattttctcagatcaaagcaatggagaaattaagttatgacgcaatatgttcaggggcccgctgcattgagcaacagggcaacaatagcaatatgtcatgcggcgatgctctccagcaataccatagcaaatcattaacccaagggtaattttttgctcctccaaatgctctgttttttaaaaatttttgttttcttagttttgtatgtatgctcaatacactcactcctatttgtgtttttttaaatgcagctcattgatgacatttccacagcttgcaagtggttcacaagagaacattctgacacaacatatgaaaaaaaatACacaactagctgccaaggttttggactgcatctacatgtcaaaagcAagcctattcacacaaaaagatagCAccacaacaagggaagagaagagtggagaagagaagagcaaggggggaagcaagcagggtggcagcaatgtagcacataatggtaatgccccaCccctagaaaaaaaaaaccaaaacaacactgatgtctgttcccaactacccaagacaccacaaacaaaatcaactgcagagcacaaaacaaagtctaacatcaacaacaccagcactagcaaaggagcaccccctacaggtatatgttattattctgttagtttgtaaaTttttTCTTTTTAGACAAATAGCACACAAACACAATAGATTCAAATAATTTGTGCCAATGCTAAGCAAAATTTCCCTACCACCAACACCAGTATATCCAATCCAAAAAAAATGTTCATTCTGGACTATAGCATTTTTTTTACTTGGCATGTATACTTTCTTTAAAATCTGGAACAGGACTAAGCATAGCCTAGTTCTGTGTCAGTACTCAATGTTATTAGAACCATAAGTTACCCAGGCCCAAATATATGTTTTGTATTTCACAAATATAGAAGATATATTATGATGTTCATACTATAGCATTATGATGTTCATTTTTTTTTCCAGTTTCTTTTCTGGTATGTTTGTATCTTTTGTTTAGCACGCTTAAGCAATGTCTTGTTTAGCATAATTTCACTCTAAAACAATCCTTTTCCAGATAAAAAAGCATCCAGTAAGGACTTTGTTTGTAGTCAGCAATCAAACAACTCTGTGGCATCCAGGACTAGAGCTAAGAGATTACATTCAGCATCCCCTTTGTTcggttgtatcaattagcccatcgaaaaaaaattcttctgaccaaaagattcgcaaagcagtaaggaaacaggtaaaaacactatttacttttttatgacatatcattatatacaaaaactgtttgcataatataagttcattttttttcagcccttgaaagcaacacaacctaccagtactcaaccagacaaggaagaatcaaacaaggatggTtttttcgtggaacctatctgtactataccagccaaaaaggaggaggtaaaattcaaaattaggcaagagtcaaaatttcaaaccattttatactttttccccctggctttttcactacatgtctttcttttttttttgcaaaacaggtgcagcccaccaaggatcttgaaagcaactctacagagtttgttattgatatagagggtccatatgatgttgaagacataacaggtcacacaatggtaatatattttttttgttccatttttgtttcaacgattttaatcaatttatatcttttttgattatgctcTTttaatatttttaggataagacgaagttcattcttgtgaattattcaaactcttcagaagatcataagagccagatcctacacaagatgaatcagacaacattccacacaagagcacaaatgtatcaaacatatatcatgcatttaaagcactagtatttcttagtttttttagtgtttgtttgtgagcaacaaactgctttttttctcactttctctttttttgtgtattatacgcctctatttttttatataatgtttgttttgcattgtacactggtccataTttttgtttttgtacatattatatatgtgtggatgaatttttagaagcagatagacattgtttagaaaacacctctatacacaaaacgatagactgctgtgcctatgtagagttcaaatttagagaacagatgaaacttagagcatagagtgttttctaaatcactttatttttgggtcatcttttaatttacagtgtcgtcttatcttatacacatcaagaacaaaatctaaactccacatgtaataaaattttggtttgtcacttttttttctaccagtactgtctgatttgtttattgttttttattttaatcctgtaaattttgcagcattgattgactgataaactaacatttttttgtatctgtgttgcactttaatgtacaaaaaatgtaccttaTTTttttatctatcctgatttgtaaccttttaatttCttctcatgtaactcacacacagcaacccaaatttgaatgcttacatcattttgatgataaatcaaaaacaaataaaagtgccagccttggacacttcttgtcccaaacaacatcaggcacaaacatcatagacattgaacacagcagcatgcagatgacgcagggggagaggtacatgcacacacccaaaacatgcataaacaataaagatggagttcaacatttatcaggtacaactttgaccctttctctatacacataaaattattttttgtactataataattttttatagacgtaagtagtaacaatcaggggggggggggaatcaaaatatctagaaaaaataaaaagattatctagccaatttatattttgcacaatcatgttagatgtttttcttgttactttttttattttttatgtggatgattttttgttagcaaacttcatgcaaacatggggaataggaggcttgagggacaacactgtgatgaaaacgagtaccaagatgactttgcagaattctatatgaagaggaaccatcagataacatcgatatggttgaacaacgtgcggtaataacctctgaTtttttttacttgtcTtttttttttcaaacatcaacccttttttgggtatgctccttattggacaaTttcatccttgcagcaaacacaaataaacaatgagcaaagtagccctcaaacaccactgcacataaacattgcttctgcaaggacacctgctacaaaacaagtaatacaaattgtaagtactttcctctcaaTtttttgcttaatttttttcaatcagcatgacataaaactatgtcttatactcttaaacattattacaataaattctgtttttcccatttttcacttgttttatttttaatgcagagttcacaatcatcacctgatataggtatgaattctccaagaatagcacaaatgagggaaccaaatcaacatgctcaaacagaagaaagacaatattcaatgacaagaatcatcgactcactaaatgcttctggcaactgttctggtaccagacacaatcTttatcgccctaaaagAattgtacatccaagtaaatacaagagctcaccatatgacaactacacacggcaccaaacaatctcggcagctgaactcaatcactacaacaacatactcagcattggtgagacgcaacaatataaatagtaagtgtcacaaaacaacaTtataatggttgcttttttacattttgctttttttagattatgtttttgcacatgttctgaattcttctgtgctgattccaacattataatTCttctgttttgtgtttctgttccttgttaattgttgcacaatcgtaaatccgtttgagttggcgttgtttcttaacttgggaacaggggattgcacagctacacaaTtgttaacctgtttgAattggcgtattttttaacctgttaacatgggatcagtggatcacatggctgcacaatcgtaagtctatttgaatttttgaattttgggaataaggtactgcacagtttcagtcgacatgtacaTttaaaatctcagactatggcaaactgaagataattaggcatgaattcagtctaatgcgtgtcagcagtagcaaaaccaaggtcacTttttgggtgcagaatacatgtttatatttcagaaatgtagatatagtttcaggttgtaaaaataTtttgcacatatgcatagttgcttatattttctgatatgtttgttcagatttgtttggtggcatgtagttccattttTTACttttgtttttttaggtttcagtttgttttgaaacataggtgcagtaTtttttaagtgcagcggtgtatttgggagatttagcttaaatggggttttgcagcggtgtatttgggagatttagcttaaatggttgggttttttatggattggaaaaaaaattctttgcaaagcgtgctgggttttgtttttgatatatacttagataaatgcctctgttcggtggatctaaaatgtggggactgaaggttttgatggtcagttctaaattatgagaagcaaatttttttgttttcaacatacgagatattaatctactgcatgtgtgttcttaatcccttcataggtaggccaacagtcactattaattatcatctacacagagcgttatttttttggttgcactatgcaaaataagttcaattatattccagttacatataacttacaacctagttacaacccagttcaattagaTtttatattttgtatgatcatcctgaattggtaggcgcagctgaaatttgcattgacaaccaaatgaaagtttatcactttttgtttaacacaacaaggcatgcaaagaaggggaaaaatctattacattacaaactatttttgcaTTtttttcataatatgcataacaaacagcttgtgctgactattccaatttaagtaatctgaatttttgtttgtactttctgccttaagagtactaagcattactaaaagcatttatcttcttatttgtggtacagtaaatttgcagttctaatggacaatgtaaaagtcacatggtcatcattgtctaaatctttatcaCcaaggggagTggtggatgcatatgtcctcaacgcttatgccaagaagattgccaacgaccagaataacaaagaaaatgaatacaggaatttttacttcttccatagaactagtgtatgtgtttttttcatactttctatcacatacattttttttctcatctccagttgtatcacttcaaattctctaccttttttttcacaggtttatttcttgaagaattgggaaggtgggaaaagaggaagactatgaaaattgtgcaagacaagcttttacatttgccaggaacaagaaacctctgcactactatgacttggtttgtacatttttttttcaaacataaaattgatccatttttttgtgtgtgtgattaacataaagtgatgccccttggttttatgttatgtagcttattttccatgtctgtatgacaatcattggttttgtttactgtggacatcaaggggcatcactttatcttctggaccatttatgatgaaaatagcaatatcataagaaaattcaagggctatggtgagctatacaaattttgttcttttttttccatacaatttttttatagacgcatcactgattattttctggttttttttcatgctctcttgtttatacacagataccaggattcattgcaatgtgggaagaattctcagatgtggagaaagactttagtaaatttgatatccaatacccacccaattactcgccaaaacaatgggtaactacctatcaaccccaacaatcatccgcaaattacatatcatttctttttgtccaaaaaccctccttttttccatgattttgttttcttaaatgattatttttgtttttgtctcatcaaggcatga
More
|
||||||||||
| CDS seq | atggatgaatgcaaaacaggagattttggaaagcgaccaatcaaagcaatggagaaattaagttatgacgcaatatgttcaggggcccgctgcattgagcaacagggcaacaatagcaatatgtcatgcggcgatgctctccagcaataccatagcaaatcattaacccaaggctcattgatgacatttccacagcttgcaagtggttcacaagagaacattctgacacaacatatgaaaaaaaatACacaactagctgccaaggttttggactgcatctacatgtcaaaagcAagcctattcacacaaaaagatagCAccacaacaagggaagagaagagtggagaagagaagagcaaggggggaagcaagcagggtggcagcaatgtagcacataatggtaatgccccaCccctagaaaaaaaaaaccaaaacaacactgatgtctgttcccaactacccaagacaccacaaacaaaatcaactgcagagcacaaaacaaagtctaacatcaacaacaccagcactagcaaaggagcaccccctacagTCAGCAATCAAACAACTCTGTGGCATCCAGGACTAGAGCTAAGAGATTACATTCAGCATCCCCTTTGTTcggttgtatcaattagcccatcgaaaaaaaattcttctgaccaaaagattcgcaaagcagtaaggaaacagcccttgaaagcaacacaacctaccagtactcaaccagacaaggaagaatcaaacaaggatggTtttttcgtggaacctatctgtactataccagccaaaaaggaggaggtgcagcccaccaaggatcttgaaagcaactctacagagtttgttattgatatagagggtccatatgatgttgaagacataacaggtcacacaatggataagacgaagttcattcttgtgaattattcaaactcttcagaagatcataagagccagatcctacacaagatgaatcagacaacattccacacaagagcacaaatccttggacacttcttgtcccaaacaacatcaggcacaaacatcatagacattgaacacagcagcatgcagatgacgcagggggagagcaaacttcatgcaaacatggggaataggaggcttgagggacaacactgtgatgaaaacgagtaccaagatgactttgcagaattctatatgaagaggaaccatcagataacatcgatatggttgaacaaccaaacacaaataaacaatgagcaaagtagccctcaaacaccactgcacataaacattgcttctgcaaggacacctgctacaaaacaagtaatacaaattagttcacaatcatcacctgatataggtatgaattctccaagaatagcacaaatgagggaaccaaatcaacatgctcaaacagaagaaagacaatattcaatgacaagaatcatcgactcactaaatgcttctggcaactgttctggtaccagacacaatcTttatcgccctaaaagAattgtacatccaagtaaatacaagagctcaccatatgacaactacacacggcaccaaacaatctcggcagctgaactcaatcactacaacaacatactcagcattgttctaatggacaatgtaaaagtcacatggtcatcattgtctaaatctttatcaCcaaggggagTggtggatgcatatgtcctcaacgcttatgccaagaagattgccaacgaccagaataacaaagaaaatgaatacaggaatttttacttcttccatagaactagtgtgggaaaagaggaagactatgaaaattgtgcaagacaagcttttacatttgccaggaacaagaaacctctgcactactatgacttgataccaggattcattgcaatgtgggaagaattctcagatgtggagaaagactttagtaaatttgatatccaatacccacccaattactcgccaaaacaatgggcatga
More
|
||||||||||
| Protein seq | MDECKTGDFGKRPIKAMEKLSYDAICSGARCIEQQGNNSNMSCGDALQQYHSKSLTQGSLMTFPQLASGSQENILTQHMKKNTQLAAKVLDCIYMSKASLFTQKDSTTTREEKSGEEKSKGGSKQGGSNVAHNGNAPPLEKKNQNNTDVCSQLPKTPQTKSTAEHKTKSNINNTSTSKGAPPTVSNQTTLWHPGLELRDYIQHPLCSVVSISPSKKNSSDQKIRKAVRKQPLKATQPTSTQPDKEESNKDGFFVEPICTIPAKKEEVQPTKDLESNSTEFVIDIEGPYDVEDITGHTMDKTKFILVNYSNSSEDHKSQILHKMNQTTFHTRAQILGHFLSQTTSGTNIIDIEHSSMQMTQGESKLHANMGNRRLEGQHCDENEYQDDFAEFYMKRNHQITSIWLNNQTQINNEQSSPQTPLHINIASARTPATKQVIQISSQSSPDIGMNSPRIAQMREPNQHAQTEERQYSMTRIIDSLNASGNCSGTRHNLYRPKRIVHPSKYKSSPYDNYTRHQTISAAELNHYNNILSIVLMDNVKVTWSSLSKSLSPRGVVDAYVLNAYAKKIANDQNNKENEYRNFYFFHRTSVGKEEDYENCARQAFTFARNKKPLHYYDLIPGFIAMWEEFSDVEKDFSKFDIQYPPNYSPKQWA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0042410 | OsLiXu_01g0042410.01 | Chr01 | 40430227 | 40436254 | + | NAM | ||
| CDS seq | atggatgaatgcaaaacaggagattttggaaagcgaccaatcaaagcaatggagaaattaagttatgacgcaatatgttcaggggcccgctgcattgagcaacagggcaacaatagcaatatgtcatgcggcgatgctctccagcaataccatagcaaatcattaacccaaggctcattgatgacatttccacagcttgcaagtggttcacaagagaacattctgacacaacatatgaaaaaaaatACacaactagctgccaaggttttggactgcatctacatgtcaaaagcAagcctattcacacaaaaagatagCAccacaacaagggaagagaagagtggagaagagaagagcaaggggggaagcaagcagggtggcagcaatgtagcacataatggtaatgccccaCccctagaaaaaaaaaaccaaaacaacactgatgtctgttcccaactacccaagacaccacaaacaaaatcaactgcagagcacaaaacaaagtctaacatcaacaacaccagcactagcaaaggagcaccccctacagTCAGCAATCAAACAACTCTGTGGCATCCAGGACTAGAGCTAAGAGATTACATTCAGCATCCCCTTTGTTcggttgtatcaattagcccatcgaaaaaaaattcttctgaccaaaagattcgcaaagcagtaaggaaacagcccttgaaagcaacacaacctaccagtactcaaccagacaaggaagaatcaaacaaggatggTtttttcgtggaacctatctgtactataccagccaaaaaggaggaggtgcagcccaccaaggatcttgaaagcaactctacagagtttgttattgatatagagggtccatatgatgttgaagacataacaggtcacacaatggataagacgaagttcattcttgtgaattattcaaactcttcagaagatcataagagccagatcctacacaagatgaatcagacaacattccacacaagagcacaaatccttggacacttcttgtcccaaacaacatcaggcacaaacatcatagacattgaacacagcagcatgcagatgacgcagggggagagcaaacttcatgcaaacatggggaataggaggcttgagggacaacactgtgatgaaaacgagtaccaagatgactttgcagaattctatatgaagaggaaccatcagataacatcgatatggttgaacaaccaaacacaaataaacaatgagcaaagtagccctcaaacaccactgcacataaacattgcttctgcaaggacacctgctacaaaacaagtaatacaaattagttcacaatcatcacctgatataggtatgaattctccaagaatagcacaaatgagggaaccaaatcaacatgctcaaacagaagaaagacaatattcaatgacaagaatcatcgactcactaaatgcttctggcaactgttctggtaccagacacaatcTttatcgccctaaaagAattgtacatccaagtaaatacaagagctcaccatatgacaactacacacggcaccaaacaatctcggcagctgaactcaatcactacaacaacatactcagcattgttctaatggacaatgtaaaagtcacatggtcatcattgtctaaatctttatcaCcaaggggagTggtggatgcatatgtcctcaacgcttatgccaagaagattgccaacgaccagaataacaaagaaaatgaatacaggaatttttacttcttccatagaactagtgtgggaaaagaggaagactatgaaaattgtgcaagacaagcttttacatttgccaggaacaagaaacctctgcactactatgacttgataccaggattcattgcaatgtgggaagaattctcagatgtggagaaagactttagtaaatttgatatccaatacccacccaattactcgccaaaacaatgggcatga
More
|
|||||||
| Protein seq | MDECKTGDFGKRPIKAMEKLSYDAICSGARCIEQQGNNSNMSCGDALQQYHSKSLTQGSLMTFPQLASGSQENILTQHMKKNTQLAAKVLDCIYMSKASLFTQKDSTTTREEKSGEEKSKGGSKQGGSNVAHNGNAPPLEKKNQNNTDVCSQLPKTPQTKSTAEHKTKSNINNTSTSKGAPPTVSNQTTLWHPGLELRDYIQHPLCSVVSISPSKKNSSDQKIRKAVRKQPLKATQPTSTQPDKEESNKDGFFVEPICTIPAKKEEVQPTKDLESNSTEFVIDIEGPYDVEDITGHTMDKTKFILVNYSNSSEDHKSQILHKMNQTTFHTRAQILGHFLSQTTSGTNIIDIEHSSMQMTQGESKLHANMGNRRLEGQHCDENEYQDDFAEFYMKRNHQITSIWLNNQTQINNEQSSPQTPLHINIASARTPATKQVIQISSQSSPDIGMNSPRIAQMREPNQHAQTEERQYSMTRIIDSLNASGNCSGTRHNLYRPKRIVHPSKYKSSPYDNYTRHQTISAAELNHYNNILSIVLMDNVKVTWSSLSKSLSPRGVVDAYVLNAYAKKIANDQNNKENEYRNFYFFHRTSVGKEEDYENCARQAFTFARNKKPLHYYDLIPGFIAMWEEFSDVEKDFSKFDIQYPPNYSPKQWA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0946800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043270 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003170 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042260 | SBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0639500 | SBH | 0.004074 | 0.0162525 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041890 | SBH | 0.0 | 0.0 | 0.026794 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0640200 | SBH | 0.8966315 | 1.423505 | 0.014337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042240 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001540 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008060 | SBH | 0.0 | 0.0 | 0.0 |
