Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0041040 | OGI:01112140 | 8/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:39384209-39386928 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagccacaatcaggcaaggccatcagcccattacgacacagaaaaatatcttgatatctgcccacgtcagctataaaaaagtatcgagagttctgccaaaaaaaagaagaagaggcggctaaaagtatccaagcatctgtctgcaactctgcatcatagcggccggggtgccactctgcagtctctcactgtgctggacatggagtccggcgggatactcccaccatccgagacatgcgccggctccggttcaccggacggccgcggcggctggcgcgccgcgcgcttcctcatcggtaacgccgtcgctgacctctcgccgtactcgcgcgcgtcaccgcacgcacgcaggtcgatcgattctttgcctcgcctgagcgtttctcggatggatggatgcagccgtcgggttcctggagcgcatcgggttcaacggcgtgcagggcaacctggtgatgtacctgagcgggccgatgggcatgtcgacggcggcggcggccgccggcgccaacgcctggggcgggacggtgctggtgctgacgctcgtcggcgcgctcgccgccgactcgcggctcgggcggtaccgggcaatcgtggccgccggcgtgctccatctgctggtcagttctttgcttccgatccccacctgtaagttagttaattaccaacatctcaagcatctatccatgtcgtgatcaagttcgcgttctcaaTttTGATATTCCCCGGCCCGGCAACACTGTTTTTGTGAATGGATTGTTTGACTTTTCTTGGGTATGTTCTTGATAGCGAGGGATGGCACTAACTTTATCACAATTAGATGGTAGTCGTTTGTATTGAAGATAAAGATAAATTTAGGACATAAGAAACAAGACATTTTTATCGCATTATAAATTGAGTTTTAATTATTTTAAACCTAAAAATATTATATGATATTTAAAAAAATCGAATGAAATGTATTGTTTAGCGGTTTGAAAGACATGTTAATGACAATCAAGATAAAATATGCATTTTAATGTTGTTGATAGAAGCAGATGGATTAAATTAAATATTAGAAAGTTGATACGAATTATAATTTTTTTTAAGGAAACTTTATGAAAAACATTTTTCTGAAAGAACTACTCTCTCCGTCCCTAAATATAAGAGATTtttggttggatgtgatgcatcccagtacaatgaatctggataattgttagcaaccaaatcaccaaataacaagaattttaccacattcagtcaacactactgttttggaggtggaagatggggaaatacatggggctagaaggttctggaagctagggaatgggaggtggaggagggaataggtactcgacgaggatccagcccggacccaagccgcctaggctggtcgccgtcctgtcttttcTGttcgtctttgaatgagcagtagctattgcgttatgtattgctcttcatgggtttgcttgggccgagatttgcgtagcggaccagttgtggtgcagcccaacaaggtgtctaacaatcccctctccttgaattcggcttgtctccatgccgatgaattaaaacctcccggatcccatggttgctccaaatatttggtgttagacaatagaacattattgaaggagaatagagcaagtagctttagcctcgataacttcttactccatgcgaagtcctcatgtgtgatgcctgacaatggcactgttatgaattgcttgccaacaatgattcccaacaatttgatatgctgcaaacagtgataacctcgtttgatcaactgcatagtccacccatgttcatgattatgtccatttattggcatgccgatttcatcagtcaagcatatgcattgcccagtagatcctaatgtatttaccacctctgcagaaactaactcaaaagtatatttctcatcatgaattgaattagcatcttcttccatttctttcacccTtttgcagcctttttcatcagcaatcacatatagcaaatctctttcagcattcaaaccaatgtaatttgattccAaacatgactcagattctgatatcaccatacaaattattctcatattccatttctccactctagtttggtagtagttgagcaacatcccccggagatcaacagatgataaccaaacagataatgatttaggatcacaaataactagattgctttccttgctagcaagtgttgtcaaactaacctggaaagtcagatcccaaaacttctgcattttctgctcaaagcaagtgcaagtttcagtagtcatcaTtttcttttgctcattccaaggaattatacttgcagcagaatcagtagtgcaacatttcccttctctagcttccagcaaacaaactaatggcagccaaggtggcatgccaaatagtctcagcttgtcaacatgttttcctttgaaggaaatgttctcagaaccaaattgctcagtactgctcagctccacaaccatcactcttgcaagatgtaagtgactgctctttcttaattgacgctgacaagtggtgggcgtcacctttgactgctctttcttaattgacgccgacaagtcttttgccttcttcccaacttccgatgtgcatgcttcaaccacatctatgagagaccgtatatcagctctagctctccgatcagcctcctcttgcctcagctcatactcctctatccgcctcaacagcaagtccaatttgtcTtctattgccat
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| CDS seq | atggcaatagaAgacaaattggacttgctgttgaggcggatagaggagtatgagctgaggcaagaggaggctgatcggagagctagagctgatatacggtctctcatagatgtggttgaagcatgcacatcggaagttgggaagaaggcaaaagacttgtcggcgtcaattaagaaagagcagtcaaaggtgacgcccaccacttgtcagcgtcaattaagaaagagcagtcacttacatcttgcaagagtgatggttgtggagctgagcagtactgagcaatttggttctgagaacatttccttcaaaggaaaacatgttgacaagctgagactatttggcatgccaccttggctgccattagtttgtttgctggaagctagagaagggaaatgttgcactactgattctgctgcaagtataattccttggaatgagcaaaagaaaAtgatgactactgaaacttgcacttgctttgagcagaaaatgcagaagttttgggatctgactttccaggttagtttgacaacacttgctagcaaggaaagcaatctagttatttgtgatcctaaatcattatctgtttggttatcatctgttgatctccgggggatgttgctcaactactaccaaactagagtggagaaatggaatatgagaataatttgtatggtgatatcagaatctgagtcatgttTggaatcaaattacattggtttgaatgctgaaagagatttgctatatgtgattgctgatgaaaaaggctgcaaaAgggtgaaagaaatggaagaagatgctaattcaattcatgatgagaaatatacttttgagttagtttctgcagaggtgcatatcaaattgttgggaatcattgttggcaagcaattcataacagtgccattgtcaggcatcacacatgaggacttcgcatggagtggggatcggaagcaaagaactgaccagcagatggagcacgccggcggccacgattgcccggtaccgcccgagccgcgagtcggcggcgagcgcgccgacgagcgtcagcaccagcaccgtcccgccccaggcgttggcgccggcggccgccgccgccgtcgacatgcccatcggcccgctcagaactctcgatacttttttatagctgacgtgggcagatatcaagatatttttctgtgtcgtaatgggctgatggccttgcctgattgtggctag
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| Protein seq | MAIEDKLDLLLRRIEEYELRQEEADRRARADIRSLIDVVEACTSEVGKKAKDLSASIKKEQSKVTPTTCQRQLRKSSHLHLARVMVVELSSTEQFGSENISFKGKHVDKLRLFGMPPWLPLVCLLEAREGKCCTTDSAASIIPWNEQKKMMTTETCTCFEQKMQKFWDLTFQVSLTTLASKESNLVICDPKSLSVWLSSVDLRGMLLNYYQTRVEKWNMRIICMVISESESCLESNYIGLNAERDLLYVIADEKGCKRVKEMEEDANSIHDEKYTFELVSAEVHIKLLGIIVGKQFITVPLSGITHEDFAWSGDRKQRTDQQMEHAGGHDCPVPPEPRVGGERADERQHQHRPAPGVGAGGRRRRRHAHRPAQNSRYFFIADVGRYQDIFLCRNGLMALPDCG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0041040 | OsLiXu_01g0041040.01 | Chr01 | 39384209 | 39386928 | - | NAM | ||
| CDS seq | atggcaatagaAgacaaattggacttgctgttgaggcggatagaggagtatgagctgaggcaagaggaggctgatcggagagctagagctgatatacggtctctcatagatgtggttgaagcatgcacatcggaagttgggaagaaggcaaaagacttgtcggcgtcaattaagaaagagcagtcaaaggtgacgcccaccacttgtcagcgtcaattaagaaagagcagtcacttacatcttgcaagagtgatggttgtggagctgagcagtactgagcaatttggttctgagaacatttccttcaaaggaaaacatgttgacaagctgagactatttggcatgccaccttggctgccattagtttgtttgctggaagctagagaagggaaatgttgcactactgattctgctgcaagtataattccttggaatgagcaaaagaaaAtgatgactactgaaacttgcacttgctttgagcagaaaatgcagaagttttgggatctgactttccaggttagtttgacaacacttgctagcaaggaaagcaatctagttatttgtgatcctaaatcattatctgtttggttatcatctgttgatctccgggggatgttgctcaactactaccaaactagagtggagaaatggaatatgagaataatttgtatggtgatatcagaatctgagtcatgttTggaatcaaattacattggtttgaatgctgaaagagatttgctatatgtgattgctgatgaaaaaggctgcaaaAgggtgaaagaaatggaagaagatgctaattcaattcatgatgagaaatatacttttgagttagtttctgcagaggtgcatatcaaattgttgggaatcattgttggcaagcaattcataacagtgccattgtcaggcatcacacatgaggacttcgcatggagtggggatcggaagcaaagaactgaccagcagatggagcacgccggcggccacgattgcccggtaccgcccgagccgcgagtcggcggcgagcgcgccgacgagcgtcagcaccagcaccgtcccgccccaggcgttggcgccggcggccgccgccgccgtcgacatgcccatcggcccgctcagaactctcgatacttttttatagctgacgtgggcagatatcaagatatttttctgtgtcgtaatgggctgatggccttgcctgattgtggctag
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| Protein seq | MAIEDKLDLLLRRIEEYELRQEEADRRARADIRSLIDVVEACTSEVGKKAKDLSASIKKEQSKVTPTTCQRQLRKSSHLHLARVMVVELSSTEQFGSENISFKGKHVDKLRLFGMPPWLPLVCLLEAREGKCCTTDSAASIIPWNEQKKMMTTETCTCFEQKMQKFWDLTFQVSLTTLASKESNLVICDPKSLSVWLSSVDLRGMLLNYYQTRVEKWNMRIICMVISESESCLESNYIGLNAERDLLYVIADEKGCKRVKEMEEDANSIHDEKYTFELVSAEVHIKLLGIIVGKQFITVPLSGITHEDFAWSGDRKQRTDQQMEHAGGHDCPVPPEPRVGGERADERQHQHRPAPGVGAGGRRRRRHAHRPAQNSRYFFIADVGRYQDIFLCRNGLMALPDCG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.833338 | 0.074081 | 0.189942 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041930 | RBH | 0.963526 | 1.075043 | 0.446631 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041480 | RBH | 0.000000 | 0.000000 | 2.538452 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041850 | RBH | 5.230175 | 2.279610 | 8.088033 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041320 | RBH | 0.105996 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040890 | RBH | 3.865032 | 5.561418 | 1.952286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0337700 | SBH | 0 | 0.009073 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040530 | RBH | 0.552769 | 0.501038 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040840 | RBH | 0.399259 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
