Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_01g0041030 OGI:01112080 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr01:39374498-39379618
Gene Symbol PTR
DNA seq

gtgatatatatcatattacaaggaatccgaatagaaatgatttgagggagcaaacacattctctttcttcgatgttgctttacatttaacctttgatccttaagaaaaattacagagcttGgggatgctgacgatctcatcagtgacgcgagcaacgcacccacacccGgtgagctgccatgacgcagcaaccgcctgctccccgccggcggaggcggcggcggcgccgccatcaaccgcccgcctcgccttcttccacgccgcgctctacctccttgcgctggcgcagggcttccacaacccgtgctctgaggccttcggcgccgaccagttcgcgccgccgagcgaccccggcgcgcgcgcgtcgcggagctcctacttcaactggtaccacttcttcaattcctgcggctacgccatctccaacagcgcgctcagctacgtcgaggacagcgtgagctggacactcgggttcgccgcgtgcttggtcatgacggcggtgtacctccccgtcttcttgctcggcacggggacgtaccgcgccgagcaacccgtccacggcggcggctccaccctcgcgcggctcgccgagtcgtcctccttggctgcgcgtgcgtggacggcgagagcgtttgggcgcaaggacgccatttgcacagaacggtgagcaaaattgtgtcctcgattcgacgatcttggtaaggtctgacattgatcgtgcaggcttctggcgaaagaagaggtagaacatggcaagggattattcgtcaagctgcttccgatctggctgaccagcatagtgttcgccgccgtcgtgtcgcagcagagcacgctgttcacaaagcagggcagcacgatggacaggcgcgtcgggggcatcgtcgtgccggccgcggcgctgaattgcgtcgtcagcttcacgatgatcacgctggtgccggtgtacgaccgcgccgtcgtgccactcgcgaggcgcttcacgggccaccccgcgggcgtcaccacgctccagcgcgtcggcgccggcatggccacatcctgcctcgccatggtcgtggcggcgctcgtcgaggccaggcggctccgcgccgcgagcgacgccagcctggtcgaccggccgggcgcgacggtgccgatgggcgtctggtggctggtgccgcagtacctcctcgtcggcctcgcgaaggtgttcggagacatcgggctcgacgagttcttctacgaccaggcgcccgacggcctgcgcagcgtcggGCTCGCCGTGTCCCTGAGCGTGCTCGGCGGtcgggaactacgtcagcggcgtgctcgtgtcggtgatcgatacggcgacgaggagcggaggagagagctggttctccgacgacctcaaccgtgctcacctcgactacttctactggatccttgccgcattcgccgctttggaggtcgtcgtgtttgtctacattgcaaagcgatatatctacaagaacaaaggagagccctgattcttgcgagttatataaataaactgaaaagtttgctgcataagcggaaaaaacttaaaatttggccctctaagtctcgactaatgctcatttcggtccttaatgttttaattcgtctattttagtcttttcaagttcttattttagtttaaagttgcccttgggccgatttaacaggcaacatggttaaacttctctctcgataaataacccacataccaaaaaagaaatgctgtacaattaagttgtgaaaccctctatatgcctaactttttataggacgtacatccaataattatatgatgttgtttcttgagatttaagtacaatgtgtcgaCGagtgatactcgcggaccggaagaatagggtattgggttacgttagaataaggatttacgtagtacgacatcaaagcagaccaaagacaaggattatactggttcagaccccttatcaggtaatagtcctagcccagtttatatgggattgatgatgatgagaacagattacaaagagagtaaacgaattgacgataccgatgagatcgtagtcgagagattcgacgagatctcccggcgagttggctccgtgcactccggcttcgtaaactttggtgggtgtgttggcgatgagatgcgatacccttaccttctccctacgggccccttttataccgtgggataccttgaccccaagtaagacttgaaaattatgtaaaccgacacgatatactagagatcataccctttccgagtaggatttcggtaattccttaacttgtgaagatattttccataatttgaggcgaattcctaacaacgtatacggaaaccaaccgtacacgtgaaggtatatctcatcggtattttccataagtcataggatagagggtatgacttatccataaccctgacacaatgaattttcttataggtcatacataatttatatacataaaaaacAattatatattctatagccattaaagctcatcccttgcgtgttactccctccgtcccaaaaaatgcaaaccctgggtttccgtgtccaattttgactgtccgtcttatatgcaatttttttataattcgtattttcattgttgttagatgataaaacatgattaatattttatgcgttacttgtctttttattttttttataattttttcaaataagatggacggtcaaacgttggacacggaaaccagggtttgTttttttttgacagagggagtacgtgctaaaataataggaagtacatgtacaatgatatttattttttccctcttttctagtgtattgcaaattaatggtgaagtggatattttcttataccaagattagcataagtagatccgaggatgattttaagttaaaacgaatacttaaaggacaaatacggacaaaatgaatcctaagaactAaaATTAAGCTTTAGGTAAACTTAAGAGACTAAATCGAGTATTAGTTCAAAGGAAACCTGACTCGATCTTTATGCCATCACCCTATATGGATATATTCTCTTATCATTCTGAATGGGTATTAACACTATTACTGCTAATCTAGATATGTAGCTCGTCAACCATCACGGCACAAAAATATCTTCATATTTGCTCACATCAGCTATATTAAAGTATCTAGTCCTTCCCCCGGTCCCCCCCCCCCCCAaaaaaaaaaaaaaaacagtcaagtatagaagcatctgtctgcatcagagcggggtaccgcactgtggcagccatggagtacggtgggctaatcgcgccatccgagacatgttcgtccgacggtcgtggcggcggcggcgcttcctcatcggtaacgtcgtcgctgacctctcgccgtactcgcgcgcgtccctgcgccgcgcgcaggtcgatcgattctttgcctcgcctgagcgtttctcggattcatggatgccgcagccgtcgggttcctggagcgcatcgggttcaacggcgtgcagggcaacctggtgatgtacctgaccgggccgatggccatgtcgacggcggcggcggccgccggcgccaacgcctggggcgggaccgtgctggtgctgacgctcgccgccgactcgcgcctcggGCggtaccgcgccatcgtggccgccggcgtgctccatctcctggtcagttcgatcttccgcttctctcgatctatacctgtcgaacaactctgtcatcggatgatcgagttcatcgatgttccaacaaagagtcgcaattttacagagtttgggaatgctgacgatctcatcagtgatgcaaccaaatcatcctcacccggcgagctgccatgacgcagccgccgcctgctcgccgtcgccgacgccgccgccatctctcgcccgcctcgtcttcttccacgccgcgctctacctgctagcgctggcgcagggcttccacaacccgtgctccgaagccttcggcgccgaccagttcgcggcgagcgaccccggcgcgcgcgcgtcccggagctcctacttcaactggtaccagttcttcaattccttcggctatggcatctccaacaccgcgctcagctacgtcgaggacagcgtcagctggaccgtcgggttcgccgtgtgattggccacgacggcggtgtacctccccatcttcttgctcggcacgcgggcgtaccgcgccgagcaacccgtcgacggcgccctgctcgcgcgcctcgccaagacgtcctcctcggcggcgcgtgcgtggacggcgagggtgtttcgccggaaggatacctcttgcacagaacggtgagctcgccgcgccagcgaaagcaaaacgtgcgttcttgatgagttgatctgataaccttcctaatggcgaatgttttacactaatcgtgcaggcttctggcgagggaagaggtaggcgagaaggggttccttgccaagttgcttccgatctgggtgaccagcatagtgttcgccatcgtcagcgcgcaagaggtcaccctgttcatcaagcagggcagcacaatggaccgacgcatcggcgcgcgcgggggcctcgtcgtgccgcccgctgctctgcagtccattgtcagcgtcatcttcctcaccttcgtgccggtctacgaccgcgccctcgtgccgctcgcgaggcgcttcacggggcaccccgcggGCatcaccacgctccagcgcgtcggcgtcggcatggccatgtcctgcctcgccatggccgtggcggcgctcgtcgaggccaaacggctccgcgccgcgagcgacgccggcctgatcgaccgGCcGgacgcgacggtgccgatgggcgtgtggtggctggtgccgcagtacgccctcgtcggcctatcgaaggtgttcggcatcatcgggctcgacgagttcttctacgaccaggtgcccgacgacctgcgcagcgtcgggctcgccatgtccctgagcgtgcgcggcgtcgggagctacgctagcggcgtgctcgtgtcggcgatcgactgcgcgacgaggagcgggggagagagctggttctccgacaacctcaaccgcgcgcacctcgactacttctactggatcctcgccgcgctcgccgctttggagatcgccgtgttcgtctacatcgcgaagcgatacgtctacaagaacaaaggcgagccatga

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CDS seq

atgctgacgatctcatcagtgacgcgagcaacgcacccacacccGgtgagctgccatgacgcagcaaccgcctgctccccgccggcggaggcggcggcggcgccgccatcaaccgcccgcctcgccttcttccacgccgcgctctacctccttgcgctggcgcagggcttccacaacccgtgctctgaggccttcggcgccgaccagttcgcgccgccgagcgaccccggcgcgcgcgcgtcgcggagctcctacttcaactggtaccacttcttcaattcctgcggctacgccatctccaacagcgcgctcagctacgtcgaggacagcgtgagctggacactcgggttcgccgcgtgcttggtcatgacggcggtgtacctccccgtcttcttgctcggcacggggacgtaccgcgccgagcaacccgtccacggcggcggctccaccctcgcgcggctcgccgagtcgtcctccttggctgcgcgtgcgtggacggcgagagcgtttgggcgcaaggacgccatttgcacagaacggcttctggcgaaagaagaggtagaacatggcaagggattattcgtcaagctgcttccgatctggctgaccagcatagtgttcgccgccgtcgtgtcgcagcagagcacgctgttcacaaagcagggcagcacgatggacaggcgcgtcgggggcatcgtcgtgccggccgcggcgctgaattgcgtcgtcagcttcacgatgatcacgctggtgccggtgtacgaccgcgccgtcgtgccactcgcgaggcgcttcacgggccaccccgcgggcgtcaccacgctccagcgcgtcggcgccggcatggccacatcctgcctcgccatggtcgtggcggcgctcgtcgaggccaggcggctccgcgccgcgagcgacgccagcctggtcgaccggccgggcgcgacggtgccgatgggcgtctggtggctggtgccgcagtacctcctcgtcggcctcgcgaaggtgttcggagacatcgggctcgacgagttcttctacgaccaggcgcccgacggcctgcgcagcgtcggGCTCGCCGTGTCCCTGAGCGTGCTCGGCGGtcgggaactacgtcagcggcgtgctcgtgtcggtgatcgatacggcgacgaggagcggaggagagagctggttctccgacgacctcaaccgtgctcacctcgactacttctactggatccttgccgcattcgccgctttggagccgtcgggttcctggagcgcatcgggttcaacggcgtgcagggcaacctggtgatgtacctgaccgggccgatggccatgtcgacggcggcggcggccgccggcgccaacgcctggggcgggaccgtgctggtgctgacgctcgccgccgactcgcgcctcggGCggtaccgcgccatcgtggccgccggcgtgctccatctcctgagtttgggaatgctgacgatctcatcagtgatgcaaccaaatcatcctcacccggcgagctgccatgacgcagccgccgcctgctcgccgtcgccgacgccgccgccatctctcgcccgcctcgtcttcttccacgccgcgctctacctgctagcgctggcgcagggcttccacaacccgtgctccgaagccttcggcgccgaccagttcgcggcgagcgaccccggcgcgcgcgcgtcccggagctcctacttcaactggtaccagttcttcaattccttcggctatggcatctccaacaccgcgctcagctacgtcgaggacagcgtcagctggaccgtcgggcttctggcgagggaagaggtaggcgagaaggggttccttgccaagttgcttccgatctgggtgaccagcatagtgttcgccatcgtcagcgcgcaagaggtcaccctgttcatcaagcagggcagcacaatggaccgacgcatcggcgcgcgcgggggcctcgtcgtgccgcccgctgctctgcagtccattgtcagcgtcatcttcctcaccttcgtgccggtctacgaccgcgccctcgtgccgctcgcgaggcgcttcacggggcaccccgcggGCatcaccacgctccagcgcgtcggcgtcggcatggccatgtcctgcctcgccatggccgtggcggcgctcgtcgaggccaaacggctccgcgccgcgagcgacgccggcctgatcgaccgGCcGgacgcgacggtgccgatgggcgtgtggtggctggtgccgcagtacgccctcgtcggcctatcgaaggtgttcggcatcatcgggctcgacgagttcttctacgaccaggtgcccgacgacctgcgcagcgtcgggctcgccatgtccctgagcgtgcgcggcgtcgggagctacgctagcggcgtgctcgtgtcggcgatcgactgcgcgacgaggagcgggggagagagctggttctccgacaacctcaaccgcgcgcacctcgactacttctactggatcctcgccgcgctcgccgctttggagatcgccgtgttcgtctacatcgcgaagcgatacgtctacaagaacaaaggcgagccatga

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Protein seq

MLTISSVTRATHPHPVSCHDAATACSPPAEAAAAPPSTARLAFFHAALYLLALAQGFHNPCSEAFGADQFAPPSDPGARASRSSYFNWYHFFNSCGYAISNSALSYVEDSVSWTLGFAACLVMTAVYLPVFLLGTGTYRAEQPVHGGGSTLARLAESSSLAARAWTARAFGRKDAICTERLLAKEEVEHGKGLFVKLLPIWLTSIVFAAVVSQQSTLFTKQGSTMDRRVGGIVVPAAALNCVVSFTMITLVPVYDRAVVPLARRFTGHPAGVTTLQRVGAGMATSCLAMVVAALVEARRLRAASDASLVDRPGATVPMGVWWLVPQYLLVGLAKVFGDIGLDEFFYDQAPDGLRSVGLAVSLSVLGGRELRQRRARVGDRYGDEERRRELVLRRPQPCSPRLLLLDPCRIRRFGAVGFLERIGFNGVQGNLVMYLTGPMAMSTAAAAAGANAWGGTVLVLTLAADSRLGRYRAIVAAGVLHLLSLGMLTISSVMQPNHPHPASCHDAAAACSPSPTPPPSLARLVFFHAALYLLALAQGFHNPCSEAFGADQFAASDPGARASRSSYFNWYQFFNSFGYGISNTALSYVEDSVSWTVGLLAREEVGEKGFLAKLLPIWVTSIVFAIVSAQEVTLFIKQGSTMDRRIGARGGLVVPPAALQSIVSVIFLTFVPVYDRALVPLARRFTGHPAGITTLQRVGVGMAMSCLAMAVAALVEAKRLRAASDAGLIDRPDATVPMGVWWLVPQYALVGLSKVFGIIGLDEFFYDQVPDDLRSVGLAMSLSVRGVGSYASGVLVSAIDCATRSGGESWFSDNLNRAHLDYFYWILAALAALEIAVFVYIAKRYVYKNKGEP

Function Protein NRT1/ PTR FAMILY 5.11 [UniProtKB/Swiss-Prot:Q8RX67]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_01g0041030 OsLiXu_01g0041030.01 Chr01 39374498 39379618 + NAM
CDS seq

atgctgacgatctcatcagtgacgcgagcaacgcacccacacccGgtgagctgccatgacgcagcaaccgcctgctccccgccggcggaggcggcggcggcgccgccatcaaccgcccgcctcgccttcttccacgccgcgctctacctccttgcgctggcgcagggcttccacaacccgtgctctgaggccttcggcgccgaccagttcgcgccgccgagcgaccccggcgcgcgcgcgtcgcggagctcctacttcaactggtaccacttcttcaattcctgcggctacgccatctccaacagcgcgctcagctacgtcgaggacagcgtgagctggacactcgggttcgccgcgtgcttggtcatgacggcggtgtacctccccgtcttcttgctcggcacggggacgtaccgcgccgagcaacccgtccacggcggcggctccaccctcgcgcggctcgccgagtcgtcctccttggctgcgcgtgcgtggacggcgagagcgtttgggcgcaaggacgccatttgcacagaacggcttctggcgaaagaagaggtagaacatggcaagggattattcgtcaagctgcttccgatctggctgaccagcatagtgttcgccgccgtcgtgtcgcagcagagcacgctgttcacaaagcagggcagcacgatggacaggcgcgtcgggggcatcgtcgtgccggccgcggcgctgaattgcgtcgtcagcttcacgatgatcacgctggtgccggtgtacgaccgcgccgtcgtgccactcgcgaggcgcttcacgggccaccccgcgggcgtcaccacgctccagcgcgtcggcgccggcatggccacatcctgcctcgccatggtcgtggcggcgctcgtcgaggccaggcggctccgcgccgcgagcgacgccagcctggtcgaccggccgggcgcgacggtgccgatgggcgtctggtggctggtgccgcagtacctcctcgtcggcctcgcgaaggtgttcggagacatcgggctcgacgagttcttctacgaccaggcgcccgacggcctgcgcagcgtcggGCTCGCCGTGTCCCTGAGCGTGCTCGGCGGtcgggaactacgtcagcggcgtgctcgtgtcggtgatcgatacggcgacgaggagcggaggagagagctggttctccgacgacctcaaccgtgctcacctcgactacttctactggatccttgccgcattcgccgctttggagccgtcgggttcctggagcgcatcgggttcaacggcgtgcagggcaacctggtgatgtacctgaccgggccgatggccatgtcgacggcggcggcggccgccggcgccaacgcctggggcgggaccgtgctggtgctgacgctcgccgccgactcgcgcctcggGCggtaccgcgccatcgtggccgccggcgtgctccatctcctgagtttgggaatgctgacgatctcatcagtgatgcaaccaaatcatcctcacccggcgagctgccatgacgcagccgccgcctgctcgccgtcgccgacgccgccgccatctctcgcccgcctcgtcttcttccacgccgcgctctacctgctagcgctggcgcagggcttccacaacccgtgctccgaagccttcggcgccgaccagttcgcggcgagcgaccccggcgcgcgcgcgtcccggagctcctacttcaactggtaccagttcttcaattccttcggctatggcatctccaacaccgcgctcagctacgtcgaggacagcgtcagctggaccgtcgggcttctggcgagggaagaggtaggcgagaaggggttccttgccaagttgcttccgatctgggtgaccagcatagtgttcgccatcgtcagcgcgcaagaggtcaccctgttcatcaagcagggcagcacaatggaccgacgcatcggcgcgcgcgggggcctcgtcgtgccgcccgctgctctgcagtccattgtcagcgtcatcttcctcaccttcgtgccggtctacgaccgcgccctcgtgccgctcgcgaggcgcttcacggggcaccccgcggGCatcaccacgctccagcgcgtcggcgtcggcatggccatgtcctgcctcgccatggccgtggcggcgctcgtcgaggccaaacggctccgcgccgcgagcgacgccggcctgatcgaccgGCcGgacgcgacggtgccgatgggcgtgtggtggctggtgccgcagtacgccctcgtcggcctatcgaaggtgttcggcatcatcgggctcgacgagttcttctacgaccaggtgcccgacgacctgcgcagcgtcgggctcgccatgtccctgagcgtgcgcggcgtcgggagctacgctagcggcgtgctcgtgtcggcgatcgactgcgcgacgaggagcgggggagagagctggttctccgacaacctcaaccgcgcgcacctcgactacttctactggatcctcgccgcgctcgccgctttggagatcgccgtgttcgtctacatcgcgaagcgatacgtctacaagaacaaaggcgagccatga

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Protein seq

MLTISSVTRATHPHPVSCHDAATACSPPAEAAAAPPSTARLAFFHAALYLLALAQGFHNPCSEAFGADQFAPPSDPGARASRSSYFNWYHFFNSCGYAISNSALSYVEDSVSWTLGFAACLVMTAVYLPVFLLGTGTYRAEQPVHGGGSTLARLAESSSLAARAWTARAFGRKDAICTERLLAKEEVEHGKGLFVKLLPIWLTSIVFAAVVSQQSTLFTKQGSTMDRRVGGIVVPAAALNCVVSFTMITLVPVYDRAVVPLARRFTGHPAGVTTLQRVGAGMATSCLAMVVAALVEARRLRAASDASLVDRPGATVPMGVWWLVPQYLLVGLAKVFGDIGLDEFFYDQAPDGLRSVGLAVSLSVLGGRELRQRRARVGDRYGDEERRRELVLRRPQPCSPRLLLLDPCRIRRFGAVGFLERIGFNGVQGNLVMYLTGPMAMSTAAAAAGANAWGGTVLVLTLAADSRLGRYRAIVAAGVLHLLSLGMLTISSVMQPNHPHPASCHDAAAACSPSPTPPPSLARLVFFHAALYLLALAQGFHNPCSEAFGADQFAASDPGARASRSSYFNWYQFFNSFGYGISNTALSYVEDSVSWTVGLLAREEVGEKGFLAKLLPIWVTSIVFAIVSAQEVTLFIKQGSTMDRRIGARGGLVVPPAALQSIVSVIFLTFVPVYDRALVPLARRFTGHPAGITTLQRVGVGMAMSCLAMAVAALVEAKRLRAASDAGLIDRPDATVPMGVWWLVPQYALVGLSKVFGIIGLDEFFYDQVPDDLRSVGLAMSLSVRGVGSYASGVLVSAIDCATRSGGESWFSDNLNRAHLDYFYWILAALAALEIAVFVYIAKRYVYKNKGEP

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Gene Transcript Chromosome Start End Strand Source
OsLiXu_01g0041030 OsLiXu_01g0041030.02 Chr01 39375917 39376031 + IsoSeq
CDS seq

ctttggaggtcgtcgtgtttgtctacattgcaaagcgatatatctacaagaacaaaggagagccctgattcttgcgagttatat

Protein seq

LWRSSCLSTLQSDISTRTKESPDSCELY

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.649145 0.681891 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0872000 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g65140 RBH 0.000000 0.516049 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0872000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0041920 SBH 0.279668 8.486093 1.177331
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0041460 RBH 6.233091 43.372257 2.263746
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0041840 RBH 1.474215 4.866974 2.666068
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0041310 SBH 0.171914 0.182057 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0040870 RBH 0.441588 0.000000 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0621500 SBH 12.265923 32.5966235 2.5570395
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0040510 RBH 1.480618 0.715617 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0621500 SBH 15.933451 19.0095835 4.193721
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0040880 SBH 0.115829 0.066542 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0040820 RBH 0.000000 2.945482 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0041060 SBH 4.189465 34.122925 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0018220 SBH 1.136557 0.000000 0.269298
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0040890 RBH 0.054138 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G041330 SBH 0.174183 0.372829 0.174223
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0040990 RBH 1.513871 53.336914 7.698227
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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