Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0039700 | OGI:01109300 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:38393677-38398237 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agccgccgcaagtggcgacggctcccacaacccaatgccgccggcgaaactcgatcccgatccgccgcccatccaccgcctcctggagctgatcaagtccgagccagacgccaccgccgcgctcgcccAccttgagctcctcgtctccacccgcccggCcttcccaccgccccagccgctcctcttccacctcctccgccgcctcgccacctcttccccgtcccacctccctcgCctcctcaacctcctcccgcggctgcgccaccgcccgcgcttctccgagtccgcggcgctcgtcgtcctatccgccttctcccgcgccatcatgcccgacgccgcgctcgacgccttccgcgccctcccttccatcctcggctgcaaccccggcatccgctcccacaacgccctcctcgacgcgttcgtccgcgcccgtcgtttctccgacgcggacgcgttctttgcctcCCTctcccatggcgccttcggccgccgcatcgcccccaaccttcagacctacaacatcgtcctccgctctctctgcgcccgtggcgacctcgatcgagcggtcactctgttcgactccctgcgacgccgccaagttgctcccgactgcatcacctattcgaccctcatgtgcgggctcgcgaaacaggaccgcttggatcacgccctcgaCctgctcgacgaaatgccgaggagtagagttcagcctgatgtcgtttgttacaatgcactcctcggtgggtgttttaaggccggtgagttcgagaaagtcatgagggtgtgggacaaactggttaaggaCccaggtgcaaggcccaacctcgctacttacaatgtgatgcttgatggATTgtgtaagtttGggagattcaaggaggtgggtgaggtctgggaaaggatggtggcaaataatctccaaCcagatgtaattacctatgggatcttgatccatggtttgtgccgatctggagatgtggatggtgcagcacgagtatactctgagattatcaagactgggcttgttattgatgctgccatgtataattcactcgtcaaggggttctgtcaagcagggagggtacaggaagcttggaagttctgggatagtgctgggtttgcagggcttcgtaatttaagaacttacaatataatgataaaggggctctttgacagtggtatggttgatgaggctatagagttatgggaCctattggagaaagatgtggcttgcattcctgacacagtgacttttggcactctgatccatggattatgccagaatggctttgctaataaggcatttacaatatttgaggaagctcgagtcagtggcaaacaaTtagatgtgttctcatattcatccatgatcaatggattatgcaatgttgggaggttagTtgatgcggttaaagtatatgagaagatggataaggaTGggTgcaaaccgaattctcatatttacaatgcactAataagtgggttctgccaagtatacaggactagtgatgctgttagaatttacagcaagatggcagacaatggttgttctcctacagtcatcacatacaacactttaatagatggtctgtgtaaggctgaaaagtatcaagaagcttcaagtgttgcaagggaaatggtagagaatggctttacaccagatatcactacttatggatcgttgatccgtggccTttttagtgacaagaagattgatgatgctctttctatttggaaacaaattctttataagggtctcaaggttgatgtgatgatgcataacatcctaatccatggccTttgttctgctggcaaagttgatgaagctctccatgttttctcagatatgAaagagaagaagaaTtgtcccccaaatctagtgacttataacaccctgatggatggactttatgaaactggctatattgataaagcagcaactctctggacctccataacagaagatgggttggaaccagacataatttcatacaatacaagaatcaagggcctatgctcttgtgacagaatacatgaggggatccagttattggatgaggttctctcacgaggcattataccgactgtaattacatggaatatacttgtcagggctgtaatcaagtatggacctatccaagtataacaccttcaaagtccttatggtattgatttcttttcatttgatttcagcATattgttctgtttcaatgcatcacactttttactttgctttgtggtcttatgcaatatcatttttcaactCctcttatgttaatcatgaagctcatttgagggtatcgtgataaaaactgacagattaaGCtgtacattaagaaggaagtcagctcactgtgcagtgggccagtggcacacACAcacacacacacacatatatatgcctagatttattaacatctatatgaatgtgagcaatgctagaaagtcttacattgtgaaacggaggaagtacctctttaccaaaTtttgccttacaactttagcagtgttttattgcttgcctattattgttcttttgattctgcatttgccaagcttgaggactaaaacaactgaaagtctgtatttctcaaccagCctaggaccaagttCTtttcagaTTtttttCTtttttgttttgtactcctataaTtttatgagatttagaaactatagatgcaaatcgcagccatatggccaatagtttctcttgccctatgataatatagtgccttcggaCacatacTtttgtctcttagaatattcaatttgaattacaacaaagagaagtataccttttaagtgcatcagattgtaacccagttactttgttttggcttttgaaagtttaatggctgaaacatatatctgatgcaagagtgaagttagcttgagtttatcaaatcacaggTttgagaaaCctgtggtctattggccaagctacaaaCAaaataattcttggattgtactcctataactttatgagatttagaaactatagatgcaaattgcagtttatggccaataatttctcttgccctatgataatataatgcctttggacgcatacTttgctctgttagagtattcactttgaattacagctagagaaagacgccttttaggtgcatctgattgtaacccagttaccTtgtttttggcttttgaaagtttaatggctgaaacatatatctgatgcaagagtgaagttagcttgagtttatcaaatcacaggtttgagaaaCctgtggtctattggccaagctacaagtaaaatAaattcttggattgcaaaagaCtatatattcatatgaactttatacactttacatttcttgtgaaaatgttgattAaaatctactgctactttttcATgcttatctctcaagtcttcattcattcttcttttcctcccttcttttcagcttctggtgatgagatatcctgctcgtagatgacctgagcaaccaaaccAatgaatattagacccagagctgcaaccttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagtattgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgcaatatctttgaccttttgtgcttctagcttgggtattggTtttaccgtgagttccttcttgttgcgaggcttcaccttcccaaggcttttgaagaacataccttcatttttctCcttctcaatCcaatcttcgaagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcctcAaaggcctgcatcttgctgtccagcctctccattatctaccacatcaggtaccttgtcaaatggtgagaaacaataaactgctcaactttcattgtgggagttgctcacctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgctggcgTttgtctccgccaagcgacgacgaagcatcggatccatcttcagagctgcaggcacggatacaagatctcttcctctttagcagcgcacatcggtatggggaggatctgtgtagcgaaggaatggacatcctaatggtgtgaagattaagcatctcctcttaatctttgctatgctgctgctcttgctctgcgaagtactatcgtggaaggatttgtttctgcccaccactcgatgcttgagcagttgagcttgagtttgggaacgatatcctttggcttttagctttcatgacaataccaatttgccccttcttgcgtgttgggcattcgcaggtccatttcttggAcgttccttgcgtgttGggaattatcaactaggtccattgtttggaccttatctgagacattgggcacaacttgtcgatactttagtaaaaaaatatcttcttactgagattgacttc
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| CDS seq | atgccgccggcgaaactcgatcccgatccgccgcccatccaccgcctcctggagctgatcaagtccgagccagacgccaccgccgcgctcgcccAccttgagctcctcgtctccacccgcccggCcttcccaccgccccagccgctcctcttccacctcctccgccgcctcgccacctcttccccgtcccacctccctcgCctcctcaacctcctcccgcggctgcgccaccgcccgcgcttctccgagtccgcggcgctcgtcgtcctatccgccttctcccgcgccatcatgcccgacgccgcgctcgacgccttccgcgccctcccttccatcctcggctgcaaccccggcatccgctcccacaacgccctcctcgacgcgttcgtccgcgcccgtcgtttctccgacgcggacgcgttctttgcctcCCTctcccatggcgccttcggccgccgcatcgcccccaaccttcagacctacaacatcgtcctccgctctctctgcgcccgtggcgacctcgatcgagcggtcactctgttcgactccctgcgacgccgccaagttgctcccgactgcatcacctattcgaccctcatgtgcgggctcgcgaaacaggaccgcttggatcacgccctcgaCctgctcgacgaaatgccgaggagtagagttcagcctgatgtcgtttgttacaatgcactcctcggtgggtgttttaaggccggtgagttcgagaaagtcatgagggtgtgggacaaactggttaaggaCccaggtgcaaggcccaacctcgctacttacaatgtgatgcttgatggATTgtgtaagtttGggagattcaaggaggtgggtgaggtctgggaaaggatggtggcaaataatctccaaCcagatgtaattacctatgggatcttgatccatggtttgtgccgatctggagatgtggatggtgcagcacgagtatactctgagattatcaagactgggcttgttattgatgctgccatgtataattcactcgtcaaggggttctgtcaagcagggagggtacaggaagcttggaagttctgggatagtgctgggtttgcagggcttcgtaatttaagaacttacaatataatgataaaggggctctttgacagtggtatggttgatgaggctatagagttatgggaCctattggagaaagatgtggcttgcattcctgacacagtgacttttggcactctgatccatggattatgccagaatggctttgctaataaggcatttacaatatttgaggaagctcgagtcagtggcaaacaaTtagatgtgttctcatattcatccatgatcaatggattatgcaatgttgggaggttagTtgatgcggttaaagtatatgagaagatggataaggaTGggTgcaaaccgaattctcatatttacaatgcactAataagtgggttctgccaagtatacaggactagtgatgctgttagaatttacagcaagatggcagacaatggttgttctcctacagtcatcacatacaacactttaatagatggtctgtgtaaggctgaaaagtatcaagaagcttcaagtgttgcaagggaaatggtagagaatggctttacaccagatatcactacttatggatcgttgatccgtggccTttttagtgacaagaagattgatgatgctctttctatttggaaacaaattctttataagggtctcaaggttgatgtgatgatgcataacatcctaatccatggccTttgttctgctggcaaagttgatgaagctctccatgttttctcagatatgAaagagaagaagaaTtgtcccccaaatctagtgacttataacaccctgatggatggactttatgaaactggctatattgataaagcagcaactctctggacctccataacagaagatgggttggaaccagacataatttcatacaatacaagaatcaagggcctatgctcttgtgacagaatacatgaggggatccagttattggatgaggttctctcacgaggcattataccgactgtaattacatggaatatacttgtcagggctgtaatcaagtatggacctatccaacttctggtgatgagatatcctgctcgtagatga
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| Protein seq | MPPAKLDPDPPPIHRLLELIKSEPDATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSSPSHLPRLLNLLPRLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQLLVMRYPARR |
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| Function | Pentatricopeptide repeat-containing protein At3g09060 [UniProtKB/Swiss-Prot:Q9SS81] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0039700 | OsLiXu_01g0039700.01 | Chr01 | 38393677 | 38398237 | + | NAM | ||
| CDS seq | atgccgccggcgaaactcgatcccgatccgccgcccatccaccgcctcctggagctgatcaagtccgagccagacgccaccgccgcgctcgcccAccttgagctcctcgtctccacccgcccggCcttcccaccgccccagccgctcctcttccacctcctccgccgcctcgccacctcttccccgtcccacctccctcgCctcctcaacctcctcccgcggctgcgccaccgcccgcgcttctccgagtccgcggcgctcgtcgtcctatccgccttctcccgcgccatcatgcccgacgccgcgctcgacgccttccgcgccctcccttccatcctcggctgcaaccccggcatccgctcccacaacgccctcctcgacgcgttcgtccgcgcccgtcgtttctccgacgcggacgcgttctttgcctcCCTctcccatggcgccttcggccgccgcatcgcccccaaccttcagacctacaacatcgtcctccgctctctctgcgcccgtggcgacctcgatcgagcggtcactctgttcgactccctgcgacgccgccaagttgctcccgactgcatcacctattcgaccctcatgtgcgggctcgcgaaacaggaccgcttggatcacgccctcgaCctgctcgacgaaatgccgaggagtagagttcagcctgatgtcgtttgttacaatgcactcctcggtgggtgttttaaggccggtgagttcgagaaagtcatgagggtgtgggacaaactggttaaggaCccaggtgcaaggcccaacctcgctacttacaatgtgatgcttgatggATTgtgtaagtttGggagattcaaggaggtgggtgaggtctgggaaaggatggtggcaaataatctccaaCcagatgtaattacctatgggatcttgatccatggtttgtgccgatctggagatgtggatggtgcagcacgagtatactctgagattatcaagactgggcttgttattgatgctgccatgtataattcactcgtcaaggggttctgtcaagcagggagggtacaggaagcttggaagttctgggatagtgctgggtttgcagggcttcgtaatttaagaacttacaatataatgataaaggggctctttgacagtggtatggttgatgaggctatagagttatgggaCctattggagaaagatgtggcttgcattcctgacacagtgacttttggcactctgatccatggattatgccagaatggctttgctaataaggcatttacaatatttgaggaagctcgagtcagtggcaaacaaTtagatgtgttctcatattcatccatgatcaatggattatgcaatgttgggaggttagTtgatgcggttaaagtatatgagaagatggataaggaTGggTgcaaaccgaattctcatatttacaatgcactAataagtgggttctgccaagtatacaggactagtgatgctgttagaatttacagcaagatggcagacaatggttgttctcctacagtcatcacatacaacactttaatagatggtctgtgtaaggctgaaaagtatcaagaagcttcaagtgttgcaagggaaatggtagagaatggctttacaccagatatcactacttatggatcgttgatccgtggccTttttagtgacaagaagattgatgatgctctttctatttggaaacaaattctttataagggtctcaaggttgatgtgatgatgcataacatcctaatccatggccTttgttctgctggcaaagttgatgaagctctccatgttttctcagatatgAaagagaagaagaaTtgtcccccaaatctagtgacttataacaccctgatggatggactttatgaaactggctatattgataaagcagcaactctctggacctccataacagaagatgggttggaaccagacataatttcatacaatacaagaatcaagggcctatgctcttgtgacagaatacatgaggggatccagttattggatgaggttctctcacgaggcattataccgactgtaattacatggaatatacttgtcagggctgtaatcaagtatggacctatccaacttctggtgatgagatatcctgctcgtagatga
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| Protein seq | MPPAKLDPDPPPIHRLLELIKSEPDATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSSPSHLPRLLNLLPRLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQLLVMRYPARR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0039700 | OsLiXu_01g0039700.02 | Chr01 | 38393677 | 38397853 | + | NAM | ||
| CDS seq | atgaatattagacccagagctgcaaccttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagtattgccatgagcccaagatcgaactcggtgtccgcatccttcgcaaacttggtcagagcgctcgtccaagaagcttgtgatgcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgctggcgTttgtctccgccaagcgacgacgaagcatcggatccatcttcagagctgcaggcacggatacaagatctcttcctctttag
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| Protein seq | MNIRPRAATFLHSTSGVAKTAFAIVSPSIAMSPRSNSVSASFANLVRALVQEACDAHLLRLKHCDLRKDLLLAFVSAKRRRSIGSIFRAAGTDTRSLPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 38397252 | 38397647 | + | OsLiXu_01g0039700.01 | OsLiXu_01g0039700.01,OsLiXu_01g0039700.02 | All |
| A5 | Chr01 | 38395816 | 38397102 | + | OsLiXu_01g0039700.02 | OsLiXu_01g0039700.01,OsLiXu_01g0039700.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.238390 | 0.567328 | 0.451585 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0852900 | RBH | 0.219780 | 0.653492 | 1.030767 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63400 | RBH | 0.155927 | 0.322203 | 0.232282 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040580 | RBH | 0.155155 | 0.000000 | 1.636459 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040060 | RBH | 0.000000 | 1.945431 | 2.291264 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040460 | RBH | 0.137518 | 4.871160 | 4.008763 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039930 | RBH | 0.076514 | 0.175212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039510 | RBH | 2.128786 | 4.041129 | 6.032451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0605700 | RBH | 0.6903365 | 3.6218835 | 1.583699 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039190 | RBH | 0.094847 | 0.315714 | 0.832905 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0604400 | RBH | 0.648108 | 3.408025 | 4.208845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039550 | RBH | 0.000000 | 0.039748 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039490 | RBH | 0.064541 | 3.949677 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039730 | RBH | 1.541202 | 13.412110 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021060 | RBH | 0.130820 | 0.423576 | 0.241291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039590 | RBH | 0.154487 | 4.306239 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040040 | RBH | 0.620056 | 2.364225 | 1.742647 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039720 | RBH | 0.762383 | 1.121855 | 3.011572 |
