Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0038700 | OGI:01107230 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:37495204-37500560 | ||||||||
| Gene Symbol | MTP11, OsMTP11 | ||||||||||
| DNA seq | acagtaaacgcgatattattgatttattggtacaaggagAaagagacaatcgatgaTatatatgaacatatataagggcgatatcggagtagatcaaggagtagatgtcaaggcggcggctgctgctgctgcctccctgttcgccgacttgggcttaggcggcggcacAaccgggaggcggtggccgtgaggcggcgaaggtgggaatggttccgtcgggacgggcatgaacggcagcttactcTtgtccgtcgccgtggCcgtggccgtcgttgccggagcagcagaagacgaagctacggcctgcagctgcagggaggAgatgcttggcagcggcagcagcagcagcactgttgccgccacggccactgcaaggcctcgtccgaatccgtggccacggcaccctgccatctcgatcgaatccaacaaaatcaacaatatgagatcaagtaattcccctctcgttccatttataagcagaacagagtagcatcattaatgctggtgttatgatctgcttgcatagttcGggagtggagtaatgaactgctcattCttctagagtactagcaagtatgatacgtgtgataaatatatttatgcatatgcatgttactcccgcctaacttgcatccatgcatggaaactgaaataatcaaccgattgctaagcagtagaacaaacaaacaaacaaacaccacactcgcacaagcacacatgcgtgcagattaatggattctacagtagagtagcatatatatagaccgagtAaacagatctcatgattcgtagccgaaggagcagaagaccgtatattaatgtaaagtggctgtgagcctgtaattaccaggcatatgtctctctagactttgagtataaattgtactacacgagatgatcgagatgacggatttaacagtcaagaatcctatagtctactacaagtagttacaaatcacaatctacggctttggcactgtcacacccgccAatccagTAtacagaattaaaatctcatacacccgcaggtttcctgacgagcaccagaaattctgaaactaattgctgctgctaaacttaataccagtggttgcgaacttgcaacctgcgcctggctatttttcatgggacagagcgtgctcgggccgatgggtgaactcgtagtcgaggtgcacgaacgctcgctcgatctcaggcaggcgttccagtttctcctgcagggcctcgccgatgtcgtgcgcctcttgcagcggcatgcttgacggcagcacgatgtccacctcgacgaagtaatgggagccaaacgtgtacgcccgcaccgtgtctatgtgcctcacggccttgtggTggttccagcataggtaggtcagcttctgaaggtattccggcgaggctgactgcccgaccaGggagtggacgttctcgagcaccgtcatcgaccatgttctgatcgtgtagattgctagctgcaaacgagaaaacagaaagtagtctctgaaatacagcgtgTttttcttaacgaaaacctaaggaaacgtttggaatacaagattcttgagtaattctcatgtttgaaacgTttggacgttgcaaaggactacacacccaggacgatggAaaccactggaagctatttcatcagactttcagtagaggaatttagtcaggcagactagaaatattctctcTtttaaaccaagtcactgtcaaggttatggacaccagttttgaaggaaaaaaaaatattggtccctctaagaaaccggtaattgccagttactggtttttaccggacaaaagagcaaaatcaaacactaattcAaaaacctgtaacatccataacaaatcgagccggttttttagttcaaaactttggattcaaacTtttgatatagctaatgtgtagttgttcataaaacatatgaatatgactatgcatggtgttgtacaaaatgtgtattccaaattaaaaTttaagttgttctggccagtacgaacaaaccagctcgtggataaatggcagtaactggtactgccaggatttgcatctctggttacaataaagtcatagctgatcTtttcatcatggtatgttttccttttttgaaagaatatatcatgatacatggAaaattggcagaaactagttacttttcccagtcaattcccaatcaggatgatgtgcctagctccaaattaacgattagatcaaatatagcatttacttgaattctagttttacactactgcaatggaacaggagaaaACcttttggtacttacgatgattgcaccaactgggtcgatccaaccttcgatataagtcgctagtagtgcagcaacaagaccaatcatatttgtgatgacatcAaaaaaatgatcctgtgcataagccttcactatttcatttgtgaatgtccggcaatataaaacaagggcaagtttcactaatgtcactgcaagcatgatgtccacaacccacttttcttgctcttttgtcaagctgAactcatccccctggagaacaagacaataagttcagcaatcagaaaggtatatggcaagctacaacagaatttcaaagccaacaaacatcaaagacacttatcgttctagaaaagaaatcctcaggcaaagtttctggtcaaaagcaaaatgagagtaggagTtcaaggccaacaaaacatcagcagacttacatcagacaacaacgagcgtactgattctaggatgatctgaaggccaagtgtcgccataacagaggcaaagacaagtattccctgaagaagatattgtgatggaacagtcaacatattgaaatttggaacttaaaagtgtatgactgataatactaagtgaaaagagaagcgataaactcgatcaTttagtgaaattagactgaaggacttatcacaaatatttccatgcataaattgtctgctgccggagtagcAaagatattgatacagtagcattgacctaagagcaagagatatctgggggaaattgggaacgtgaTttctagtaactatgaaaatcctcaaaacacaaaattccgcatgTtactatggtccatctgccaggaatGtttgcaatagtttagtttcttttcattcctggagcatttccactttttcttttcattttgcggAaaaaagaacatcacagggagtaactggctatgcatcatgaatagccgagagttgagtcccttggaatcaattgcataaattacagtaagaagaataagcatggcaaacatgaaggtaatcttgtgataggactcaccagtggctgcatacgctttttaccaatagggtatctgtagggatttggtgtttgcatagagaaggcagtaaaccAcaagataaatcctgacaacaagtcaagaagagaatccaaagtcgaagcaataatagcaagtgaaccacttctcacagaagcatacactttcgcagcaaaaagaaccatgtttgctatgttcgatagCcggatggctaaagtctcactcctagcaaccttctcacgctcttcctacaggcaaataaatttatgttcagtgttgcaatgcagtagttaaacaatttgtcttccctactgttacaacagaaaagcttatcaaacAtaccttggacattcctggaagaaaaccacgatcagtaagtgtatccatttcattaaagccctctagcatttccacttgctgttggtagtattcagcaactacgtcctcaggaccttgagctgaagatagaatcgtacatcaatcacagaaaattatgtccagcatgaagaaagatagtgacattagtggagcaagcaggcatgtttgcttcacatgttctactgaattataccacttctcagtgaacctgataactctgatatctaattaattatatttcatctattgattatAtcacatgtagaactactgaataaaatgctacagctattgaaatgtacaggataaaaatctcaattctgatttaaatagtactactagtactaggattgtggggccttgaattcAaccaccaatagaccacgactttaagcccacaaggactccctacttctatagccatgggaaagcagtgattgacaatacgtgagagaaacgactactagatatccaaaCcccaaatgttgagtgcggccaaatgacatgattgggttattaattcaacTttttgtgcccaatgcaactttgTtaaccagaacaaaacctctaaaattgcataaaagggtaaaataattgtgacaatacatgaacgctaagacacctggtgcccttctcacgctgtcagtcacccacacccagtgccccagtctttacaactcggctcagtgctaaccacccccgctgatAaaaaaaaaaaagttctcttagaactctgttcacgtgcactccaagaacagagcagctcacgtgaggaccgtcctgccctgccccagatgagcacgatagtataggcaactaggcaatatcagaaagctagaaacaacaaattCctcattccaccAatataacattccccattcctattcttatctgccaaaggttgcacacgaagaatctagcctaccactaccgTCaacatccTaatccaatccccatctatactagcacagctgagctcttgctagttgctgaaacgaaaaataaaaggagttactgccTttttatattataaaggcctaaacggaactgcttttatagaaagcagataaaaataagttactttagtagatatctattgcaaaaggcaactaccAaaacaaatgaaccatGttgccaacacacgagaaaaggcAaacgaatgaaagcctagatcaagcaaccaagcatacgaacacaacaatatatccaaaagaccataaacatCAcacggtacaagggtagcaagctcgcgacggcgagttggagagagatcgtacataggacgccgaggcagtggtggtggagcccgcggggcggccgcctctcctgctgcacctccggcggtcggaagccgTcgaagttgaggcgccacgacttctccgccgctgcgcccgcgccgccaccgtcgccaccgccgccgaaggaaccggcctcgacggcggagagcaggagcagctcctccccCtcctCcccaccgcccgcgaccgccgccgccattattccacgaaccagggagccggaggcgacGgcgcgcggcacgctggtgggcagtctccctcggtcagttGccctcccgccgtgcggcgcggcggcgccacggggagaggagaacggcgaggcggttggtagtttcggcgaagcggggaacgcgggcgctcgagcgacgcaaaaaaagagtGCgggtctcgtgatgt
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| CDS seq | atggcggcggcggtcgcgggcggtgggGaggaGggggaggagctgctcctgctctccgccgtcgaggccggttccttcggcggcggtggcgacggtggcggcgcgggcgcagcggcggagaagtcgtggcgcctcaacttcgAcggcttccgaccgccggaggtgcagcaggagaggcggccgccccgcgggctccaccaccactgcctcggcgtcctatctcaaggtcctgaggacgtagttgctgaatactaccaacagcaagtggaaatgctagagggctttaatgaaatggatacacttactgatcgtggttttcttccaggaatgtccaaggaagagcgtgagaaggttgctaggagtgagactttagccatccgGctatcgaacatagcaaacatggttctttttgctgcgaaagtgtatgcttctgtgagaagtggttcacttgctattattgcttcgactttggattctcttcttgacttgttgtcaggatttatcttgTggtttactgccttctctatgcaaacaccaaatccctacagataccctattggtaaaaagcgtatgcagccactgggaatacttgtctttgcctctgttatggcgacacttggccttcagatcatcctagaatcagtacgctcgttgttgtctgatggggatgagtTcagcttgacaaaagagcaagaaaagtgggttgtggacatcatgcttgcagtgacattagtgaaacttgcccttgttttatattgccggacattcacaaatgaaatagtgaaggcttatgcacaggatcattttttTgatgtcatcacaaatatgattggtcttgttgctgcactactagcgacttatatcgaaggttggatcgacccagttggtgcaatcatcctagcaatctacacgatcagaacatggtcgatgacggtgctcgagaacgtccactccCtggtcgggcagtcagcctcgccggaataccttcagaagctgacctacctatgctggaaccAccacaaggccgtgaggcacatagacacggtgcgggcgtacacgtttggctcccattacttcgtcgaggtggacatcgtgctgccgtcaagcatgccgctgcaagaggcgcacgacatcggcgaggccctgcaggagaaactggaacgcctgcctgagatcgagcgagcgttcgtgcacctcgactacgagttcacccatcggcccgagcacgctctgtcccatgaaaaatag
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| Protein seq | MAAAVAGGGEEGEELLLLSAVEAGSFGGGGDGGGAGAAAEKSWRLNFDGFRPPEVQQERRPPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFNEMDTLTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFASVMATLGLQIILESVRSLLSDGDEFSLTKEQEKWVVDIMLAVTLVKLALVLYCRTFTNEIVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIERAFVHLDYEFTHRPEHALSHEK |
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| Function | Metal tolerance protein 5 [UniProtKB/Swiss-Prot:Q5NA18] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038700 | OsLiXu_01g0038700.03 | Chr01 | 37495297 | 37500558 | - | NAM | ||
| CDS seq | atgcctgggtgccgtggccacggattcggacgaggccttgcagtggccgtggcggcaacagtgctgctgctgctgccgctgccaagcatcTcctccctgcagctgcaggccgtagcttcgtcttctgctgctccggcaacgacggccacgGccacggcgacggacaAgagtaagctgccgttcatgcccgtcccgacggaaccattcccaccttcgccgcctcacggccaccgcctcccggtTgtgccgccgcctaagcccaagtcggcgaacagggaggcagcagcagcagccgccgccttgacatctactccttga
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| Protein seq | MPGCRGHGFGRGLAVAVAATVLLLLPLPSISSLQLQAVASSSAAPATTATATATDKSKLPFMPVPTEPFPPSPPHGHRLPVVPPPKPKSANREAAAAAAALTSTP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038700 | OsLiXu_01g0038700.02 | Chr01 | 37495991 | 37500560 | - | NAM | ||
| CDS seq | atggcggcggcggtcgcgggcggtgggGaggaGggggaggagctgctcctgctctccgccgtcgaggccggttccttcggcggcggtggcgacggtggcggcgcgggcgcagcggcggagaagtcgtggcgcctcaacttcgAcggcttccgaccgccggaggtgcagcaggagaggcggccgccccgcgggctccaccaccactgcctcggcgtcctatctcaaggtcctgaggacgtagttgctgaatactaccaacagcaagtggaaatgctagagggctttaatgaaatggatacacttactgatcgtggttttcttccaggaatgtccaaggaagagcgtgagaaggttgctaggagtgagactttagccatccgGctatcgaacatagcaaacatggttctttttgctgcgaaagtgtatgcttctgtgagaagtggttcacttgctattattgcttcgactttggattctcttcttgacttgttgtcaggatttatcttgTggtttactgccttctctatgcaaacaccaaatccctacagataccctattggtaaaaagcgtatgcagccactgggaatacttgtctttgcctctgttatggcgacacttggccttcagatcatcctagaatcagtacgctcgttgttgtctgatggggatgagtTcagcttgacaaaagagcaagaaaagtgggttgtggacatcatgcttgcagtgacattagtgaaacttgcccttgttttatattgccggacattcacaaatgaaatagtgaaggcttatgcacaggatcattttttTgatgtcatcacaaatatgattggtcttgttgctgcactactagcgacttatatcgaaggttggatcgacccagttggtgcaatcatcctagcaatctacacgatcagaacatggtcgatgacggtgctcgagaacgtccactccCtggtcgggcagtcagcctcgccggaataccttcagaagctgacctacctatgctggaaccAccacaaggccgtgaggcacatagacacggtgcgggcgtacacgtttggctcccattacttcgtcgaggtggacatcgtgctgccgtcaagcatgccgctgcaagaggcgcacgacatcggcgaggccctgcaggagaaactggaacgcctgcctgagatcgagcgagcgttcgtgcacctcgactacgagttcacccatcggcccgagcacgctctgtcccatgaaaaatag
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| Protein seq | MAAAVAGGGEEGEELLLLSAVEAGSFGGGGDGGGAGAAAEKSWRLNFDGFRPPEVQQERRPPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFNEMDTLTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFASVMATLGLQIILESVRSLLSDGDEFSLTKEQEKWVVDIMLAVTLVKLALVLYCRTFTNEIVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIERAFVHLDYEFTHRPEHALSHEK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038700 | OsLiXu_01g0038700.01 | Chr01 | 37495320 | 37500560 | - | NAM | ||
| CDS seq | atggcggcggcggtcgcgggcggtgggGaggaGggggaggagctgctcctgctctccgccgtcgaggccggttccttcggcggcggtggcgacggtggcggcgcgggcgcagcggcggagaagtcgtggcgcctcaacttcgAcggcttccgaccgccggaggtgcagcaggagaggcggccgccccgcgggctccaccaccactgcctcggcgtcctatctcaaggtcctgaggacgtagttgctgaatactaccaacagcaagtggaaatgctagagggctttaatgaaatggatacacttactgatcgtggttttcttccaggaatgtccaaggaagagcgtgagaaggttgctaggagtgagactttagccatccgGctatcgaacatagcaaacatggttctttttgctgcgaaagtgtatgcttctgtgagaagtggttcacttgctattattgcttcgactttggattctcttcttgacttgttgtcaggatttatcttgTggtttactgccttctctatgcaaacaccaaatccctacagataccctattggtaaaaagcgtatgcagccactgggaatacttgtctttgcctctgttatggcgacacttggccttcagatcatcctagaatcagtacgctcgttgttgtctgatggggatgagtTcagcttgacaaaagagcaagaaaagtgggttgtggacatcatgcttgcagtgacattagtgaaacttgcccttgttttatattgccggacattcacaaatgaaatagtgaaggcttatgcacaggatcattttttTgatgtcatcacaaatatgattggtcttgttgctgcactactagcgacttatatcgaaggttggatcgacccagttggtgcaatcatcggtgccgtggccacggattcggacgaggccttgcagtggccgtggcggcaacagtgctgctgctgctgccgctgccaagcatcTcctccctgcagctgcaggccgtag
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| Protein seq | MAAAVAGGGEEGEELLLLSAVEAGSFGGGGDGGGAGAAAEKSWRLNFDGFRPPEVQQERRPPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFNEMDTLTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFASVMATLGLQIILESVRSLLSDGDEFSLTKEQEKWVVDIMLAVTLVKLALVLYCRTFTNEIVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIIGAVATDSDEALQWPWRQQCCCCCRCQASPPCSCRP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0038700 | OsLiXu_01g0038700.04 | Chr01 | 37495204 | 37495645 | - | IsoSeq | ||
| CDS seq | atattgttgattttgttggattcgatcgagatggcagggtgccgtggccacggattcggacgaggccttgcagtggccgtggcggcaacagtgctgctgctgctgccgctgccaagcatcTcctccctgcagctgcaggccgtagcttcgtcttctgctgctccggcaacgacggccacgGccacggcgacggacaAgagtaagctgccgttcatgcccgtcccgacggaaccattcccaccttcgccgcctcacggccaccgcctcccggtTgtgccgccgcctaagcccaagtcggcgaacagggaggcagcagcagcagccgccgccttgacatctact
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| Protein seq | ILLILLDSIEMAGCRGHGFGRGLAVAVAATVLLLLPLPSISSLQLQAVASSSAAPATTATATATDKSKLPFMPVPTEPFPPSPPHGHRLPVVPPPKPKSANREAAAAAAALTST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 37495607 | 37497486 | - | OsLiXu_01g0038700.03 | OsLiXu_01g0038700.03,OsLiXu_01g0038700.01 | All |
| AL | Chr01 | 37495320 | 37497486 | - | OsLiXu_01g0038700.01 | OsLiXu_01g0038700.02,OsLiXu_01g0038700.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.585291 | 1.051308 | 5.243885 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0837800 | RBH | 4.619716 | 4.882251 | 7.343060 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62070 | RBH | 2.864165 | 3.219376 | 1.990519 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0837800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039560 | RBH | 1.547879 | 17.626698 | 5.834715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039020 | RBH | 1.519084 | 1.816646 | 2.753152 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039450 | RBH | 7.220749 | 29.758963 | 24.035479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038910 | RBH | 0.330006 | 0.186125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038480 | RBH | 20.027317 | 11.350511 | 20.893507 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0351100 | SBH | 0.346487 | 0.55595 | 2.5250965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038150 | RBH | 0.509455 | 0.179823 | 3.244519 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0591100 | RBH | 44.4909195 | 28.3212005 | 12.3206155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038490 | RBH | 1.023700 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038450 | RBH | 1.360762 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038690 | RBH | 17.893656 | 15.772572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038520 | RBH | 0.388511 | 3.038089 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039030 | RBH | 0.992424 | 2.787764 | 2.449855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038730 | RBH | 0.805049 | 1.543562 | 11.199438 |
