Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0036000 | OGI:01101300 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:35375359-35376552 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggtggaagttgtccagtttcttgtaagaaagtacgtggatagccttgcggaggaggaggcagcagcggagctccctttccgcgcgcacttctacgacgtcaaggccgaactggagaaggccgccatttcttccaccaacgccgatgagctccggcagtgcctgtacgagctcaacgacctgctcgccgagtgccgcatgctcgccagccggacgaacactcggccgggctgcttctccccgtccgaagcgtggcgttccaacagggtgaagacgagggtgatcgccgtcaagcgccgcgttctgcggtgcgtcgagagcgattccagcggcaacgccgcagccttggaggaggaggacagcgccgccgcgggcttcagccggtggaccacctcctggctcgaagagggcaccgtccacgggttcgaccagcagctcgccgagctggaatccatggcgttcggggcggagtgcggcgccggaggtcttaccggcgtcggcatcgtcggcatgggcggcgtcgggaagaccgcgctcgcgcagctcgtgttcaacagcccgcgggcgaggcgccgcttcttccccaggatctgggtgtgcctgtcgcgcaccgcctgcgccggagcggacgtgagaaaggaagtcttgcagagcatgctcatggctctcggcctcgaggaggaggtcatcttgtccatggatggtggcaacggcctgggagagatggtgtttgcagtccatgagcagctcaaGgggaagaggtacctcgtagtattcgacgacgtctggaacgtcgacggctggtacgccgacgtggtaggccgccggaatgcctcgcccaccggcgaggagtggggtgagcgcctcgccttcgggttgcccaaagagagaggcggggtggtggtcgtcaccagccggctggagcaagcggcagagacgatggtcgggaagagcagcttgcaccgtgtgcagccattggccgacggcgagagctgctgggcaattttcatggatgcattttccaaggaaagacggccggctgacgtcaccactgtcatcaacatgaaagatgagatcattgatacctgcggtgggctcccgtcagcggccaagacactgggagacatctttgcaaggagtttatcatcgcccgcctcaacttctagccaggaacttagcaagaataggtag
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| CDS seq | atggcggtggaagttgtccagtttcttgtaagaaagtacgtggatagccttgcggaggaggaggcagcagcggagctccctttccgcgcgcacttctacgacgtcaaggccgaactggagaaggccgccatttcttccaccaacgccgatgagctccggcagtgcctgtacgagctcaacgacctgctcgccgagtgccgcatgctcgccagccggacgaacactcggccgggctgcttctccccgtccgaagcgtggcgttccaacagggtgaagacgagggtgatcgccgtcaagcgccgcgttctgcggtgcgtcgagagcgattccagcggcaacgccgcagccttggaggaggaggacagcgccgccgcgggcttcagccggtggaccacctcctggctcgaagagggcaccgtccacgggttcgaccagcagctcgccgagctggaatccatggcgttcggggcggagtgcggcgccggaggtcttaccggcgtcggcatcgtcggcatgggcggcgtcgggaagaccgcgctcgcgcagctcgtgttcaacagcccgcgggcgaggcgccgcttcttccccaggatctgggtgtgcctgtcgcgcaccgcctgcgccggagcggacgtgagaaaggaagtcttgcagagcatgctcatggctctcggcctcgaggaggaggtcatcttgtccatggatggtggcaacggcctgggagagatggtgtttgcagtccatgagcagctcaaGgggaagaggtacctcgtagtattcgacgacgtctggaacgtcgacggctggtacgccgacgtggtaggccgccggaatgcctcgcccaccggcgaggagtggggtgagcgcctcgccttcgggttgcccaaagagagaggcggggtggtggtcgtcaccagccggctggagcaagcggcagagacgatggtcgggaagagcagcttgcaccgtgtgcagccattggccgacggcgagagctgctgggcaattttcatggatgcattttccaaggaaagacggccggctgacgtcaccactgtcatcaacatgaaagatgagatcattgatacctgcggtgggctcccgtcagcggccaagacactgggagacatctttgcaaggagtttatcatcgcccgcctcaacttctagccaggaacttagcaagaataggtag
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| Protein seq | MAVEVVQFLVRKYVDSLAEEEAAAELPFRAHFYDVKAELEKAAISSTNADELRQCLYELNDLLAECRMLASRTNTRPGCFSPSEAWRSNRVKTRVIAVKRRVLRCVESDSSGNAAALEEEDSAAAGFSRWTTSWLEEGTVHGFDQQLAELESMAFGAECGAGGLTGVGIVGMGGVGKTALAQLVFNSPRARRRFFPRIWVCLSRTACAGADVRKEVLQSMLMALGLEEEVILSMDGGNGLGEMVFAVHEQLKGKRYLVVFDDVWNVDGWYADVVGRRNASPTGEEWGERLAFGLPKERGGVVVVTSRLEQAAETMVGKSSLHRVQPLADGESCWAIFMDAFSKERRPADVTTVINMKDEIIDTCGGLPSAAKTLGDIFARSLSSPASTSSQELSKNR |
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| Function | Probable disease resistance protein At5g45440 [UniProtKB/Swiss-Prot:Q9FHJ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0036000 | OsLiXu_01g0036000.01 | Chr01 | 35375359 | 35376552 | + | NAM | ||
| CDS seq | atggcggtggaagttgtccagtttcttgtaagaaagtacgtggatagccttgcggaggaggaggcagcagcggagctccctttccgcgcgcacttctacgacgtcaaggccgaactggagaaggccgccatttcttccaccaacgccgatgagctccggcagtgcctgtacgagctcaacgacctgctcgccgagtgccgcatgctcgccagccggacgaacactcggccgggctgcttctccccgtccgaagcgtggcgttccaacagggtgaagacgagggtgatcgccgtcaagcgccgcgttctgcggtgcgtcgagagcgattccagcggcaacgccgcagccttggaggaggaggacagcgccgccgcgggcttcagccggtggaccacctcctggctcgaagagggcaccgtccacgggttcgaccagcagctcgccgagctggaatccatggcgttcggggcggagtgcggcgccggaggtcttaccggcgtcggcatcgtcggcatgggcggcgtcgggaagaccgcgctcgcgcagctcgtgttcaacagcccgcgggcgaggcgccgcttcttccccaggatctgggtgtgcctgtcgcgcaccgcctgcgccggagcggacgtgagaaaggaagtcttgcagagcatgctcatggctctcggcctcgaggaggaggtcatcttgtccatggatggtggcaacggcctgggagagatggtgtttgcagtccatgagcagctcaaGgggaagaggtacctcgtagtattcgacgacgtctggaacgtcgacggctggtacgccgacgtggtaggccgccggaatgcctcgcccaccggcgaggagtggggtgagcgcctcgccttcgggttgcccaaagagagaggcggggtggtggtcgtcaccagccggctggagcaagcggcagagacgatggtcgggaagagcagcttgcaccgtgtgcagccattggccgacggcgagagctgctgggcaattttcatggatgcattttccaaggaaagacggccggctgacgtcaccactgtcatcaacatgaaagatgagatcattgatacctgcggtgggctcccgtcagcggccaagacactgggagacatctttgcaaggagtttatcatcgcccgcctcaacttctagccaggaacttagcaagaataggtag
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| Protein seq | MAVEVVQFLVRKYVDSLAEEEAAAELPFRAHFYDVKAELEKAAISSTNADELRQCLYELNDLLAECRMLASRTNTRPGCFSPSEAWRSNRVKTRVIAVKRRVLRCVESDSSGNAAALEEEDSAAAGFSRWTTSWLEEGTVHGFDQQLAELESMAFGAECGAGGLTGVGIVGMGGVGKTALAQLVFNSPRARRRFFPRIWVCLSRTACAGADVRKEVLQSMLMALGLEEEVILSMDGGNGLGEMVFAVHEQLKGKRYLVVFDDVWNVDGWYADVVGRRNASPTGEEWGERLAFGLPKERGGVVVVTSRLEQAAETMVGKSSLHRVQPLADGESCWAIFMDAFSKERRPADVTTVINMKDEIIDTCGGLPSAAKTLGDIFARSLSSPASTSSQELSKNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.184050 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0798900 | RBH | 0.0 | 0.039578 | 0.499762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58510 | RBH | 0.0 | 0.026620 | 0.128649 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0798900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036880 | RBH | 0.0 | 2.197764 | 0.450256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036370 | RBH | 0.0 | 0.542792 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036750 | RBH | 0.272130 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036160 | RBH | 0.059331 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035770 | RBH | 0.0 | 2.872884 | 0.947032 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0546900 | SBH | 0.0772995 | 5.57051 | 0.223785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0555700 | RBH | 0.148401 | 3.1689055 | 0.348671 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021850 | SBH | 0.418274 | 0.314073 | 0.114854 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036280 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036010 | RBH | 0.0 | 3.310759 | 0.0 |
