Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0032140 | OGI:01092970 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:32412690-32416896 | ||||||||
| Gene Symbol | ERA1, OsERA1, OsERA1.1, OsERA1.2 | ||||||||||
| DNA seq | ttccagattaacaaatgccagtttgcgagtttatatggacttttggtatctggggccgttcagtcagtgtaaaaaagaatgaaatatcatacatgtcttagacagttgtaacttgtaaggcgcaacattgtagagctcatacatatcatacatgtcctagacagttgtatcactagcttgaaaagaactcataggccgtatggtatttgtctagtacaacattgtagagcggatggatcggctctagcaagtttgagtaaggaccaagcacgtgctgcggcaaggggcacgcatcagaatcaaccatggcgctgtactggctaactgacagaccactcaggcagtagcacgagtggtagtgatctctgttcttcccaggcttatccctcaaccctccatccagcacctgcgtgatttggaacacgaatcagatttaccattcaagtgtcaagtaaacactagagaatttccaagttacagcaagaaattttctacaaatccagctaagcatgaaattagatgttcttttattacctgtgcgcaaagcaggatgtattgctgcagcgcgatgttgtggaacagtgggcctatttggttgctcttctctataaaatcaaatccaaacttagcataatatgctgcttctgccaaaaaaaaccaaatataagatcatggggataaacaacccaacatcatatacaacaagaagctagtacgataacctagttgatgaagaatgaaaggtataaaatatgtaaaaagtaatatttgcacaattgcacttaatccccacaagcaaatcaaacagaacaagcgcggtcacacgctatgaagcgtgtcaccagatatttgaagcaatataattttaaaataaacattaagctgaagatttcagttctccatgagaaacatattgatgtttcttaccagtagaagagctcgtaccacaagcatcatctcctggaggccttttgctggaatatgatgattttaattgctcatcaacaactgtcattagtttttgtgttaaagcaagagcagctccctggtcatacaccagaagtttgtcagatagagtggaggatgccaggaaaaaaaaaacaggtatggcattaacctgccaaaaggagtagcaaccatcaaccaatttattagttcgtccttgaaatccacattccactccttggcgaaatgccacccagcccttaattgtgaagataatccacaaagcaattatcagtgttataataagtaaatgctgtgacagccacaaactactattagtgtctatatggtgttttctaatacatctactcagcattgtacaactagaaaccgaaggaccacatccaaataccatggtcttaaaagttcacattgcctaccactaaacccatggaaattagaagtagcgctacacaagttggaatagaaagagaactgaatcaatcaacagaggtttccttacaatcaagctagccaaatcaagtttgtccacttcgttaagcaggatcatcgtagccagcccacaaaaagtgtaccttgtcaaaccaaagcaactattacttaaaagatccaaatagatacatacaggaaaaatAaaaaaaaacagagatcctccgttgaaacatacccaccatgagcttcagcatacggttccccagcaatgccaccttcataggtttgacacctggaggcatttagtttaggaactaaccagccattctatattttacagctggaaaattgacaatgacaagagccaaagcaaaccttgttatgtaatttccaacaccttttgctagttcaccatcaagaatgttcacaaggctggcaacctaacaaaacaagaaaaaaaaatcaaagaattgcaaagaaaatactaagggagcaaagaaactcaccgatattgcagtatagctagcacgaacatctatttcaccaccatcatgcattctggtcaaaggataataaaatgagtggcagatataaggtgtaaggaactcgacatggaaagaaactattttctccccactgtttactacttgagaaaatgcacacctaaaagctcccgatgtatctttcatccgaagcatgaacttgtacaggttgtccctgatttacaccgtagaaattgttaaccatatgatacagatggaagcatatttagtcaacatagtgccataagaattacctgtttaccgatgatagtgccctttcactccctatagttacaagtgtatttacagcagcataagttgtagcgagatgaggcaactagcacaaagaagtgaaattgacatcAaaaaattcgcctcatactaaattaaccttatcgagtgagttcgtaaaactgaactcaaattaggaagatcaaagaacagtcaagattgactattctaaagtttgcacgagttggataacacaagtcaaagcactaactttgccatcaaaatgagaacctgtagttatataaacactttaggccatcaaatacccaaagataaattgatcttcagatatttcatcacatcgaacttgtttgagatggtcaatttagttagggtagatgttgagtagcctagactggcccatctagtcatttgaagcaaaagatcagtgttcacatggtttgttgaagttttgtattgcctaagataacgacaactaatgtgaaatgttaaccaactcaaagctatattacccagccacaagtttggaacccaaaagtttgaggttaagagaaaacctgtccaggtcctccgccataaccaccatctttgtcctgaaagaatcatgataataatggcaatgaaatcttcagaatcacatgtatgtgcaaatcaatatcttcagttatttgctatgtatccataagcaaattcatgttgtaccgaacactttatgagaaaggaaagggataacatgaactaactaagtggagcagaacaaagatagttgtgctatccttgatatgcatgaaaagttacatgtgggttcagaagattcattcagacacccagcttgagactttaaaaattccacaagaccttagaaatctagtggaactatttcttcgattgaactttgttatcacctcagtaaaggaaagaacaaagtactgaaaaattgacttgttgagttggtttgtttacagacacgtgaagagtggtaactaatgcatatttatgtagtaagagtaacatttttttatataataccagcagtttaacaaacctgacatcgagataagaagtccacaatatcatcctcaacatcgtcaggtatttcatccaacagagcaagtgcatgaataatccagtagcacagccaaggtcgactagaacataattttaaaaccaaatatatacatcaacttcgcataatctcattttaaaaccatattctgctatataattcaataccggagaaccattacttggcatcgagcacatggaagcttggtccaagatgtttcagccctctcgtcaaatactcaacatgctgctcacgccacagctctaacctgaagcagtaaacatacaaccaaatctcgtaataaggaggtggggaacattaaattctcaacctaactggtaacattaagcttctgtgactgtgaacaacataaccaggctatatctacactgtgtaattgataaggatgaactaattacggaactaagtcaagctaaaatttagcaacaacgatatgatacccgcacccatctagcacatctctcgcatcccaatccgccacagcactctacatgcacaaacactgcgagtaactaaagcaaagtgatagcgacagcgctctcgaagggttcgcttacatgagggaattggcgttgggcgcgttgccgaagaggacgcggtagatttcgcccaccttcgcctccaccttcatctgctccacctgcgtcacagtcagccggggcagctcagcggcctggctatccgctgcaggaccgccctcagcagcagcaggaggatatggcggcggcggcggcggcgaaggggactccatgggcgcggtggtcggcggcgcggaaggcggcggcctgcgagctcgctgcagccgcggggatctcaccgaaaggcggcgaaccatgtgcgagccggagaggcagcagccgtggccgcggtgctcttgtgggccccggaagacggggaaagcggtcaagccaacaaccagaaggcccat
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| CDS seq | atgggccttctggttgttggcttgaccgctttccccgtcttccggggcccacaagagcaccgcggccacggctgctgcctctccggctcgcacatggttcgccgcctttcggtgagatccccgcggctgcagcgagctcgcaggccgccgccttccgcgccgccgaccaccgcgcccatggagtccccttcgccgccgccgccgccgccatatcctcctgctgctgctgagggcggtcctgcagcggatagccaggccgctgagctgccccggctgactgtgacgcaggtggagcagatgaaggtggaggcgaaggtgggcgaaatctaccgcgtcctcttcggcaacgcgcccaacgccaattccctcatgttagagctgtggcgtgagcagcatgttgagtatttgacgagagggctgaaacatcttggaccaagcttccatgtgctcgatgccaatcgaccttggctgtgctactggattattcatgcacttgctctgttggatgaaatacctgacgatgttgaggatgatattgtggacttcttatctcgatgtcaggacaaagatggtggttatggcggaggacctggacagttgcctcatctcgctacaacttatgctgctgtaaatacacttgtaactatagggagtgaaagggcactatcatcggtaaacagggacaacctgtacaagttcatgcttcggatgaaagatacatcgggagcttttaggtgtgcattttctcaagtagtaaacagtggggagaaaatagtttctttccatgtcgagttccttacaccttatatctgccactcattttattatcctttgaccagaatgcatgatggtggtgaaatagatgttcgtgctagctatactgcaatatcggttgccagccttgtgaacattcttgatggtgaactagcaaaaggtgttggaaattacataacaaggtgtcaaacctatgaaggtggcattgctggggaaccgtatgctgaagctcatggtgggtacactttttgtgggctggctacgatgatcctgcttaacgaagtggacaaacttgatttggctagcttgattggctgggtggcatttcgccaaggagtggaatgtggatttcaaggacgaactaataaattggttgatggttgctactccttttggcagggagctgctcttgctttaacacaaaaactaatgacagttgttgatgagcaattaaaatcatcatattccagcaaaaggcctccaggagatgatgcttgtggtacgagctcttctactgaagcagcatattatgctaagtttggatttgattttatagagaagagcaaccaaataggcccactgttccacaacatcgcgctgcagcaatacatcctgctttgcgcacaggtgctggatggagggttgagggataagcctgggaagaacagagatcactaccactcgtgctactgcctgagtggtctgtcagttagccagtacagcgccatggttgattctgatgcgtgccccttgccgcagcacgtgcttggtccttactcaaacttgctagagccgatccatccgctctacaatgttgtactagacaaataccatacggcctatgagttcttttcaagctag
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| Protein seq | MGLLVVGLTAFPVFRGPQEHRGHGCCLSGSHMVRRLSVRSPRLQRARRPPPSAPPTTAPMESPSPPPPPPYPPAAAEGGPAADSQAAELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRCAFSQVVNSGEKIVSFHVEFLTPYICHSFYYPLTRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFFSS |
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| Function | Protein farnesyltransferase subunit beta [UniProtKB/Swiss-Prot:Q04903] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0032140 | OsLiXu_01g0032140.01 | Chr01 | 32412690 | 32416896 | - | NAM | ||
| CDS seq | atgggccttctggttgttggcttgaccgctttccccgtcttccggggcccacaagagcaccgcggccacggctgctgcctctccggctcgcacatggttcgccgcctttcggtgagatccccgcggctgcagcgagctcgcaggccgccgccttccgcgccgccgaccaccgcgcccatggagtccccttcgccgccgccgccgccgccatatcctcctgctgctgctgagggcggtcctgcagcggatagccaggccgctgagctgccccggctgactgtgacgcaggtggagcagatgaaggtggaggcgaaggtgggcgaaatctaccgcgtcctcttcggcaacgcgcccaacgccaattccctcatgttagagctgtggcgtgagcagcatgttgagtatttgacgagagggctgaaacatcttggaccaagcttccatgtgctcgatgccaatcgaccttggctgtgctactggattattcatgcacttgctctgttggatgaaatacctgacgatgttgaggatgatattgtggacttcttatctcgatgtcaggacaaagatggtggttatggcggaggacctggacagttgcctcatctcgctacaacttatgctgctgtaaatacacttgtaactatagggagtgaaagggcactatcatcggtaaacagggacaacctgtacaagttcatgcttcggatgaaagatacatcgggagcttttaggtgtgcattttctcaagtagtaaacagtggggagaaaatagtttctttccatgtcgagttccttacaccttatatctgccactcattttattatcctttgaccagaatgcatgatggtggtgaaatagatgttcgtgctagctatactgcaatatcggttgccagccttgtgaacattcttgatggtgaactagcaaaaggtgttggaaattacataacaaggtgtcaaacctatgaaggtggcattgctggggaaccgtatgctgaagctcatggtgggtacactttttgtgggctggctacgatgatcctgcttaacgaagtggacaaacttgatttggctagcttgattggctgggtggcatttcgccaaggagtggaatgtggatttcaaggacgaactaataaattggttgatggttgctactccttttggcagggagctgctcttgctttaacacaaaaactaatgacagttgttgatgagcaattaaaatcatcatattccagcaaaaggcctccaggagatgatgcttgtggtacgagctcttctactgaagcagcatattatgctaagtttggatttgattttatagagaagagcaaccaaataggcccactgttccacaacatcgcgctgcagcaatacatcctgctttgcgcacaggtgctggatggagggttgagggataagcctgggaagaacagagatcactaccactcgtgctactgcctgagtggtctgtcagttagccagtacagcgccatggttgattctgatgcgtgccccttgccgcagcacgtgcttggtccttactcaaacttgctagagccgatccatccgctctacaatgttgtactagacaaataccatacggcctatgagttcttttcaagctag
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| Protein seq | MGLLVVGLTAFPVFRGPQEHRGHGCCLSGSHMVRRLSVRSPRLQRARRPPPSAPPTTAPMESPSPPPPPPYPPAAAEGGPAADSQAAELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRCAFSQVVNSGEKIVSFHVEFLTPYICHSFYYPLTRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFFSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0032140 | OsLiXu_01g0032140.02 | Chr01 | 32412714 | 32416896 | - | NAM | ||
| CDS seq | atgggccttctggttgttggcttgaccgctttccccgtcttccggggcccacaagagcaccgcggccacggctgctgcctctccggctcgcacatggttcgccgcctttcggtgagatccccgcggctgcagcgagctcgcaggccgccgccttccgcgccgccgaccaccgcgcccatggagtccccttcgccgccgccgccgccgccatatcctcctgctgctgctgagggcggtcctgcagcggatagccaggccgctgagctgccccggctgactgtgacgcaggtggagcagatgaaggtggaggcgaaggtgggcgaaatctaccgcgtcctcttcggcaacgcgcccaacgccaattccctcatgttagagctgtggcgtgagcagcatgttgagtatttgacgagagggctgaaacatcttggaccaagcttccatgtgctcgatgccaatcgaccttggctgtgctactggattattcatgcacttgctctgttggatgaaatacctgacgatgttgaggatgatattgtggacttcttatctcgatgtcaggacaaagatggtggttatggcggaggacctggacagttgcctcatctcgctacaacttatgctgctgtaaatacacttgtaactatagggagtgaaagggcactatcatcggtaaacagggacaacctgtacaagttcatgcttcggatgaaagatacatcgggagcttttagaatgcatgatggtggtgaaatagatgttcgtgctagctatactgcaatatcggttgccagccttgtgaacattcttgatggtgaactagcaaaaggtgttggaaattacataacaaggtgtcaaacctatgaaggtggcattgctggggaaccgtatgctgaagctcatggtgggtacactttttgtgggctggctacgatgatcctgcttaacgaagtggacaaacttgatttggctagcttgattggctgggtggcatttcgccaaggagtggaatgtggatttcaaggacgaactaataaattggttgatggttgctactccttttggcagggagctgctcttgctttaacacaaaaactaatgacagttgttgatgagcaattaaaatcatcatattccagcaaaaggcctccaggagatgatgcttgtggtacgagctcttctactgaagcagcatattatgctaagtttggatttgattttatagagaagagcaaccaaataggcccactgttccacaacatcgcgctgcagcaatacatcctgctttgcgcacaggtgctggatggagggttgagggataagcctgggaagaacagagatcactaccactcgtgctactgcctgagtggtctgtcagttagccagtacagcgccatggttgattctgatgcgtgccccttgccgcagcacgtgcttggtccttactcaaacttgctagagccgatccatccgctctacaatgttgtactagacaaataccatacggcctatgagttcttttcaagctag
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| Protein seq | MGLLVVGLTAFPVFRGPQEHRGHGCCLSGSHMVRRLSVRSPRLQRARRPPPSAPPTTAPMESPSPPPPPPYPPAAAEGGPAADSQAAELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFFSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 32414594 | 32414804 | - | OsLiXu_01g0032140.01 | OsLiXu_01g0032140.01,OsLiXu_01g0032140.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.009718 | 0.984282 | 1.340409 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0737800 | RBH | 1.249747 | 0.778430 | 5.549356 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53600 | RBH | 1.136005 | 0.608267 | 1.376031 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0737800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032920 | RBH | 1.537903 | 18.228399 | 4.363671 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032420 | RBH | 0.225187 | 2.412321 | 1.905628 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032840 | RBH | 1.038658 | 11.087955 | 7.146929 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032130 | RBH | 0.215129 | 0.341946 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031820 | RBH | 2.878403 | 16.078222 | 12.890868 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0511200 | RBH | 9.2044745 | 18.755022 | 38.3405875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031520 | RBH | 0.330865 | 0.889053 | 0.919365 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0504900 | RBH | 8.524627 | 18.5220295 | 23.9464635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031760 | RBH | 0.106797 | 0.497489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031810 | RBH | 0.926125 | 16.556810 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031990 | RBH | 1.267882 | 3.387155 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031930 | RBH | 0.132713 | 5.736114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032390 | RBH | 0.597537 | 4.746357 | 2.448952 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032040 | RBH | 1.632842 | 1.536048 | 5.478156 |
