Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0029020 | OGI:01002250 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:30082281-30083156 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacgaaatcttttgctgaaaagctaggtcacggtggatttggtgctgtttacagaggcaaactatctgatggccgccaggtagcagtcaagatattaaaggactccaagggtgatggggaagaattcatcaatgaggttgctagtattagtagaacttctcacgtcaacgtggtgactctgttaggattttgcttgcatggatccaaaagggctctaatctatgagtatatgccaaatggttcacttgaaagatatgctttccgcaagaactccaaagacaaacttgcactaacttgggagaagttatttgatgtagcagttggaattgcccgaggacttgagtatcttcaccgtggatgcaacacccgtatcgtgcatttcgatattaaaccccacaacattctactagatcaagaattctgccctaagatctcagattttggaatggctaagctttgtgctaacaaagagagtatcatctccattgccggtgcaagaggaacaataggctatattgccccggaggtctattcaaagcagtttggaacaataagtagcaaatctgatgtctatagctatggaatgatgatccttgagatggccggggcaagggagaggaacatagatgccaatagtgaatctagtagccactatttcccacaatggatttatgaacatctagatgaatacttcatttgttcttctgagattaacggtgagatcacagagcttgtaagaaagatgatagtggttgggctgtggtgcatacaagtagctgcaactaaccgcccaacaatgactagagtcgtcgaaatgctagaaggtagcacgagcggtctagaattgccaccaaaagtgctattgagctggtaa
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| CDS seq | atgacgaaatcttttgctgaaaagctaggtcacggtggatttggtgctgtttacagaggcaaactatctgatggccgccaggtagcagtcaagatattaaaggactccaagggtgatggggaagaattcatcaatgaggttgctagtattagtagaacttctcacgtcaacgtggtgactctgttaggattttgcttgcatggatccaaaagggctctaatctatgagtatatgccaaatggttcacttgaaagatatgctttccgcaagaactccaaagacaaacttgcactaacttgggagaagttatttgatgtagcagttggaattgcccgaggacttgagtatcttcaccgtggatgcaacacccgtatcgtgcatttcgatattaaaccccacaacattctactagatcaagaattctgccctaagatctcagattttggaatggctaagctttgtgctaacaaagagagtatcatctccattgccggtgcaagaggaacaataggctatattgccccggaggtctattcaaagcagtttggaacaataagtagcaaatctgatgtctatagctatggaatgatgatccttgagatggccggggcaagggagaggaacatagatgccaatagtgaatctagtagccactatttcccacaatggatttatgaacatctagatgaatacttcatttgttcttctgagattaacggtgagatcacagagcttgtaagaaagatgatagtggttgggctgtggtgcatacaagtagctgcaactaaccgcccaacaatgactagagtcgtcgaaatgctagaaggtagcacgagcggtctagaattgccaccaaaagtgctattgagctggtaa
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| Protein seq | MTKSFAEKLGHGGFGAVYRGKLSDGRQVAVKILKDSKGDGEEFINEVASISRTSHVNVVTLLGFCLHGSKRALIYEYMPNGSLERYAFRKNSKDKLALTWEKLFDVAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESIISIAGARGTIGYIAPEVYSKQFGTISSKSDVYSYGMMILEMAGARERNIDANSESSSHYFPQWIYEHLDEYFICSSEINGEITELVRKMIVVGLWCIQVAATNRPTMTRVVEMLEGSTSGLELPPKVLLSW |
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| Function | Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [UniProtKB/Swiss-Prot:D7SFH9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0029020 | OsLiXu_01g0029020.01 | Chr01 | 30082281 | 30083156 | + | NAM | ||
| CDS seq | atgacgaaatcttttgctgaaaagctaggtcacggtggatttggtgctgtttacagaggcaaactatctgatggccgccaggtagcagtcaagatattaaaggactccaagggtgatggggaagaattcatcaatgaggttgctagtattagtagaacttctcacgtcaacgtggtgactctgttaggattttgcttgcatggatccaaaagggctctaatctatgagtatatgccaaatggttcacttgaaagatatgctttccgcaagaactccaaagacaaacttgcactaacttgggagaagttatttgatgtagcagttggaattgcccgaggacttgagtatcttcaccgtggatgcaacacccgtatcgtgcatttcgatattaaaccccacaacattctactagatcaagaattctgccctaagatctcagattttggaatggctaagctttgtgctaacaaagagagtatcatctccattgccggtgcaagaggaacaataggctatattgccccggaggtctattcaaagcagtttggaacaataagtagcaaatctgatgtctatagctatggaatgatgatccttgagatggccggggcaagggagaggaacatagatgccaatagtgaatctagtagccactatttcccacaatggatttatgaacatctagatgaatacttcatttgttcttctgagattaacggtgagatcacagagcttgtaagaaagatgatagtggttgggctgtggtgcatacaagtagctgcaactaaccgcccaacaatgactagagtcgtcgaaatgctagaaggtagcacgagcggtctagaattgccaccaaaagtgctattgagctggtaa
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| Protein seq | MTKSFAEKLGHGGFGAVYRGKLSDGRQVAVKILKDSKGDGEEFINEVASISRTSHVNVVTLLGFCLHGSKRALIYEYMPNGSLERYAFRKNSKDKLALTWEKLFDVAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESIISIAGARGTIGYIAPEVYSKQFGTISSKSDVYSYGMMILEMAGARERNIDANSESSSHYFPQWIYEHLDEYFICSSEINGEITELVRKMIVVGLWCIQVAATNRPTMTRVVEMLEGSTSGLELPPKVLLSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0690800 | RBH | 0.271877 | 0.187419 | 1.252418 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49614 | RBH | 0.264194 | 0.165643 | 0.203216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0690800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002590 | RBH | 0.146139 | 0.000000 | 0.280715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001140 | SBH | 0.956421 | 0.000000 | 0.853077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002680 | SBH | 0.053964 | 0.0 | 0.464416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028990 | SBH | 0.081408 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002610 | SBH | 0.428048 | 1.129574 | 2.189153 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0473400 | RBH | 0.547993 | 8.016478 | 0.2487315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028410 | SBH | 0.043897 | 0.0 | 0.334089 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0462600 | RBH | 0.5395495 | 0.9057255 | 0.022464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028670 | SBH | 0.224244 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028570 | RBH | 0.235843 | 0.388253 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | SBH | 0.287462 | 2.850632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002540 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029270 | SBH | 0.0 | 0.0 | 0.754148 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028950 | RBH | 0.0 | 0.0 | 0.0 |
