Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0027410 | OGI:01082690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:28658638-28662271 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgcacatggtacacCaacaaaactttgtacttcatggtaaaactgaggatcgacaagggttctttacaagggtaacAaaatctggttactagtcattcatgccttcgaggtcagctcctcctgataacttaaacggtatagatgaagaaggtgcttctgtgctcccctaaaacaaaactaCacatatcgtagagtaaacgagttggaggactcatctacagaaaacatagtacggcggatattttaggggagcatagaagcacttctcgaaaggaagaagaagaagaaaagaaagggaaacgaacgattcctatgccTttatgtcttccagtctttgctaaatgtaaacctgttgcaatcacggtattgaactatattgaatatttgaccAaaccagacAggataatgAaatgttttcatgtcctattttctgtatctgTtcagcattggagcctcaggaatcggcactgtttgagatctcctccgcagattgCggtgactcgacatcgacgcttcccatctggctgctgggccTtttctgatcctgccaataataaaagagagaaagcatttacttgttagaaacaaaatctccaagaaagatgctcagTtgtgtaaaacaaaaGtttgaaaaacggtgacaaaaaatgtactaaacgtacttgtcgatatgcattctgaactgcttcaagcaTttggacaacatgactcatttttggccttttgtcagcatctggatcaacacacttcaggccaaccaagattgcccgcttaagggcacgTtttgggggcttaatctcaaggtttggatccactacttcctccgccctcttgctgctgatcatcattttaagccattctaccagatttgtctgaaatgacataaaaaaatgacttgagtactagatgatagactggtcattcaaattgtcgaaaaataggaaaagcttctacctcatCggcaggtttactgtaatcaacTgggtctctagcagtcacagattccAagagcacaacgccaaaactgtaaatatcaCTcttttcatttagcatcccgctattcgcatattcaggtgcaacgtacctaacaacagattaagaagaaaattaagatgtgcttttttccaaaTttacagaagacaaataaaatagaacaaacatggtgcaaaaaaaagctatacccataTgttcccatcactcttgtattgatgtagctactatcagaattcAgtagtttggccaacccaaaatcagaaaccttgctgttgaattcatcatcaattagtatattacttgacttaatatctcggtgtaCaactttggggtctatagcttcatgaagatatgcaagcctgaaaatcatgaaactcatctacattagcatgtagtagtattgatctttaaaacctgtatttatgtgagaagggtaaatttcatgggaaataactgcaagtaaggtccagactgtgatcttacgcttttgcagtgccaaggagaatcttcatacggttttcccaagtaaggatgcccccactcatggccccatgaagccattgttctaggtttccattgttgacatattcatagacaagcatcctgcaggtgaatattcagAaaaggtcaatgtacagtgagaaacaagggaacaaggaaaacacatattgattatgcacaagggaaggaacagaatttccatcttatgaaatGgataattcattttcccttttgaaccttaagaacataatgcttagtatcacaatgaacttgcacatggtggattcgtataaactgggctgagcagcaaagttaattatgcagaacaaagggaacagagaggaagaaatgaTcacctgtgtatcccttccacacagtaccccagaagtcgcaccagattcttatgccgaacgtgaccgAtggcttcaacttcgactctaaaTtccttctctgcttgCcccctgcaaacccagcaaagaaatcttagctccaagttaacatacagtaaaCtcactaaggcaatataaacttacacattgttaaggatcttcttcacggcaacttcagTCccattcatcagtcgacccttgtagacaattccatagccaccctctccaaggacattactctttgcaaaccggttcgttgcgtactcgaggtCcctcaaggtaaaccagtgaccccatcccaaatgtgatagctcaggcaacccaaccagcggtgaagcggacgcatacccatacgatgaactgcctttCctaccaggcccagagctgctgtaatcttcagaatatgagctcccagccttctctatgttgtacactgagctgcaTtggctgaacgcgtcgacatcgacagatctactctctgccaagtgcgaaacacccttcatctgttcatatttatcctgcactggcatgataggtgttccactgtcatgcaggctctgtgcatcaactctgtcaacattgatatctttcgacacaatAgggatctccatatgtgatctcccgtcgaatccaaccgccgtcttctttttcctccgcatagagagccacaatgctatgatgaacaaaattgccatcagtatcccaatgccgatggcaatcaggacccatactctcaagcgaagcacgggtgttgtctgtgacagtgctgaactgATagagttgctgtcggacgacatatctatccttcagtctatctaagatcaagaattgtatcagagatgctctcacaaattcagaatcttgcacggatttgccagctgaatttacaaacttatcctggtttgcttttatctgttaaaaaaCaaaaggtactctattacttaactctgaaacctgaaccagcacatgaacagaactataaaagtaataaagctgcgcgcatatgatggcccaattcttccatgttcagggggaaaaaATattatctttcatatcactgtacagacaattcgcacaagcaaactaatcaaacaggaaaaaaaatgtccatttctgggtcaaaccaccagcgaggcatggactcctgatgggactcaaaactctgaactgtttattcaacaaccacgcctatacaaaattattcaaatgcaagatacagggtgtccaagaaagaaaaaaaatccgcacaatgcaaattgcaaaaacaaacCATaattctaccgacaccaCccccaacccacaCCGgaaatcccaaagcccatcacaattccaagaggcacagagtcaaacacctcccaagatcacagatgccgacgttCccccaacaaaacacgaagaggaaagagacCGggagattacctctgcagcgccttcagctcatCcccattggccaagaatcccatcaagaaccacccccaaacccgtcgtcagagctgcaaaagaaagggcagttcttgcccgtgtgtgtgtgtgtgtgtgtggagtggAgtggcgtgcaccggaatgcgcaagaagggcgagctgccTttgcttctttgcgagagagagagagagagagagagagagagagatggagacggaaagacgagcactacagcacacatgcacacatgaagagagacaagatgaagctagagagagagagagagagagtaaaggagaagcaaagggcagaggggagaggactata
More
|
||||||||||
| CDS seq | atgtcgtccgacagcaactctATcagttcagcactgtcacagacaacacccgtgcttcgcttgagagtatgggtcctgattgccatcggcattgggatactgatggcaattttgttcatcatagcattgtggctctctatgcggaggaaaaagaagacggcggttggattcgacgggagatcacatatggagatcccTattgtgtcgaaagatatcaatgttgacagagttgatgcacagagcctgcatgacagtggaacacctatcatgccagtgcaggataaatatgaacagatgaagggtgtttcgcacttggcagagagtagatctgtcgatgtcgacgcgttcagccaAtgcagctcagtgtacaacatagagaaggctgggagctcatattctgaagattacagcagctctgggcctggtagGaaaggcagttcatcgtatgggtatgcgtccgcttcaccgctggttgggttgcctgagctatcacatttgggatggggtcactggtttaccttgaggGacctcgagtacgcaacgaaccggtttgcaaagagtaatgtccttggagagggtggctatggaattgtctacaagggtcgactgatgaatggGActgaagttgccgtgaagaagatccttaacaatgtgggGcaagcagagaaggaAtttagagtcgaagttgaagccaTcggtcacgttcggcataagaatctggtgcgacttctggggtactgtgtggaagggatacacaggatgcttgtctatgaatatgtcaacaatggaaacctagaacaatggcttcatggggccatgagtgggggcatccttacttgggaaaaccgtatgaagattctccttggcactgcaaaagcgcttgcatatcttcatgaagctatagaccccaaagttGtacaccgagatattaagtcaagtaatatactaattgatgatgaattcaacagcaaggtttctgattttgggttggccaaactacTgaattctgatagtagctacatcaatacaagagtgatgggaacAtatgggtacgttgcacctgaatatgcgaatagcgggatgctaaatgaaaagAGtgatatttacagttttggcgttgtgctctTggaatctgtgactgctagagacccAgttgattacagtaaacctgccGatgagacaaatctggtagaatggcttaaaatgatgatcagcagcaagagggcggaggaagtagtggatccaaaccttgagattaagcccccaaaAcgtgcccttaagcgggcaatcttggttggcctgaagtgtgttgatccagatgctgacaaaaggccaaaaatgagtcatgttgtccaaAtgcttgaagcagttcagaatgcatatcgacaagatcagaaaAggcccagcagccagatgggaagcgtcgatgtcgagtcaccGcaatctgcggaggagatctcaaacagtgccgattcctga
More
|
||||||||||
| Protein seq | MSSDSNSISSALSQTTPVLRLRVWVLIAIGIGILMAILFIIALWLSMRRKKKTAVGFDGRSHMEIPIVSKDINVDRVDAQSLHDSGTPIMPVQDKYEQMKGVSHLAESRSVDVDAFSQCSSVYNIEKAGSSYSEDYSSSGPGRKGSSSYGYASASPLVGLPELSHLGWGHWFTLRDLEYATNRFAKSNVLGEGGYGIVYKGRLMNGTEVAVKKILNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNNGNLEQWLHGAMSGGILTWENRMKILLGTAKALAYLHEAIDPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLNSDSSYINTRVMGTYGYVAPEYANSGMLNEKSDIYSFGVVLLESVTARDPVDYSKPADETNLVEWLKMMISSKRAEEVVDPNLEIKPPKRALKRAILVGLKCVDPDADKRPKMSHVVQMLEAVQNAYRQDQKRPSSQMGSVDVESPQSAEEISNSADS |
||||||||||
| Function | Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027410 | OsLiXu_01g0027410.01 | Chr01 | 28658638 | 28662271 | - | NAM | ||
| CDS seq | atgtcgtccgacagcaactctATcagttcagcactgtcacagacaacacccgtgcttcgcttgagagtatgggtcctgattgccatcggcattgggatactgatggcaattttgttcatcatagcattgtggctctctatgcggaggaaaaagaagacggcggttggattcgacgggagatcacatatggagatcccTattgtgtcgaaagatatcaatgttgacagagttgatgcacagagcctgcatgacagtggaacacctatcatgccagtgcaggataaatatgaacagatgaagggtgtttcgcacttggcagagagtagatctgtcgatgtcgacgcgttcagccaAtgcagctcagtgtacaacatagagaaggctgggagctcatattctgaagattacagcagctctgggcctggtagGaaaggcagttcatcgtatgggtatgcgtccgcttcaccgctggttgggttgcctgagctatcacatttgggatggggtcactggtttaccttgaggGacctcgagtacgcaacgaaccggtttgcaaagagtaatgtccttggagagggtggctatggaattgtctacaagggtcgactgatgaatggGActgaagttgccgtgaagaagatccttaacaatgtgggGcaagcagagaaggaAtttagagtcgaagttgaagccaTcggtcacgttcggcataagaatctggtgcgacttctggggtactgtgtggaagggatacacaggatgcttgtctatgaatatgtcaacaatggaaacctagaacaatggcttcatggggccatgagtgggggcatccttacttgggaaaaccgtatgaagattctccttggcactgcaaaagcgcttgcatatcttcatgaagctatagaccccaaagttGtacaccgagatattaagtcaagtaatatactaattgatgatgaattcaacagcaaggtttctgattttgggttggccaaactacTgaattctgatagtagctacatcaatacaagagtgatgggaacAtatgggtacgttgcacctgaatatgcgaatagcgggatgctaaatgaaaagAGtgatatttacagttttggcgttgtgctctTggaatctgtgactgctagagacccAgttgattacagtaaacctgccGatgagacaaatctggtagaatggcttaaaatgatgatcagcagcaagagggcggaggaagtagtggatccaaaccttgagattaagcccccaaaAcgtgcccttaagcgggcaatcttggttggcctgaagtgtgttgatccagatgctgacaaaaggccaaaaatgagtcatgttgtccaaAtgcttgaagcagttcagaatgcatatcgacaagatcagaaaAggcccagcagccagatgggaagcgtcgatgtcgagtcaccGcaatctgcggaggagatctcaaacagtgccgattcctga
More
|
|||||||
| Protein seq | MSSDSNSISSALSQTTPVLRLRVWVLIAIGIGILMAILFIIALWLSMRRKKKTAVGFDGRSHMEIPIVSKDINVDRVDAQSLHDSGTPIMPVQDKYEQMKGVSHLAESRSVDVDAFSQCSSVYNIEKAGSSYSEDYSSSGPGRKGSSSYGYASASPLVGLPELSHLGWGHWFTLRDLEYATNRFAKSNVLGEGGYGIVYKGRLMNGTEVAVKKILNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNNGNLEQWLHGAMSGGILTWENRMKILLGTAKALAYLHEAIDPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLNSDSSYINTRVMGTYGYVAPEYANSGMLNEKSDIYSFGVVLLESVTARDPVDYSKPADETNLVEWLKMMISSKRAEEVVDPNLEIKPPKRALKRAILVGLKCVDPDADKRPKMSHVVQMLEAVQNAYRQDQKRPSSQMGSVDVESPQSAEEISNSADS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.317795 | 2.996214 | 0.337903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0664200 | RBH | 0.187976 | 0.494392 | 1.244196 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47470 | RBH | 0.126961 | 0.332104 | 0.319880 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0664200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028170 | RBH | 0.0 | 14.864129 | 5.154924 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027700 | RBH | 0.0 | 6.235326 | 0.725824 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028140 | RBH | 0.0 | 23.703918 | 6.223223 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027370 | RBH | 0.0 | 0.780542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027140 | RBH | 0.0 | 23.358835 | 4.090158 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0452200 | RBH | 3.395058 | 4.8670885 | 5.375404 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026840 | RBH | 0.0 | 2.175037 | 0.489578 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0440900 | RBH | 3.344639 | 0.754559 | 7.845291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027090 | RBH | 0.000000 | 0.050947 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027010 | RBH | 0.0 | 3.165168 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027320 | RBH | 0.0 | 21.838911 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025750 | SBH | 0.067618 | 0.350297 | 0.275000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027210 | RBH | 0.0 | 31.816193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027590 | RBH | 0.0 | 12.660667 | 3.531406 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027340 | RBH | 0.200696 | 21.729357 | 2.320270 |
