Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0027320 | OGI:01082490 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:28581108-28582802 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcaagcacaactttataatcactagcacacaagtacagaagtcttacatcactgatgtttactacataatttagctggaatgtttaacaaccacacacaatgccaaatgcaggctagtttctgcaagatcgacactgatttgctttacaacctagagtatgtacaaacaagtcttttcttcttttatttataaccaagcgaccacaatcttcttaggcaataacaatatcaaTatacttccttgattccttcagtaacttagccacagctagcaaggaatataatttatattggaattttttTCctgttgtctggaacctcagatgcttccacccctggaaaataaattggaaagatgaactgtgagtttatcttagcagtgataaaaaatagatatatttcagggcgccataatgttgcatttgaataggagatattcagacgccgttttatcttaatttgctttctatgtaggcgttctaggtgtggtttattgggtctcagagattacttatctatctataaaatatattttgagaagaatggtgtatgcatagctccctcttctagggttacaatggttgtgctcccttccgagagagcatagaataactttgaataaattgccTtttcctatagacacatcacacttgtgcctcttaaaaagaaggcaatcaccttttaatttgccagatgaactgacatgAaaaagagatgtttaaagcacctgtcggctgctagtctggaactgaattaagcacaactgctcaaggggtaagactgcaagattcaaactttcttttgtttggtagcagagagattattcttctggtgctagatcccacgtgaataattgtaactaggggacaaaccatcagtacataaattagggctaactcctgtgcctaccagcctatgtgcaaaccaataatcacaaaatggtgcatcgtgcataccactgcatgcaaattatgtgtgcatgatggcttgtcacaggctcaagttatgagctcttggttttgccagatttatctgttacagtacagtgcagatactctgatgttgcactgcatctgaaaagtataactgcaaatgaaacgacaactgactaccctagcagtgttcaagttcaatcatctagggcatgattatcatggctgacatctaatgatccctgcatatgtgttcgtgtgagatgtgacagtagctatcagcttacaagctagcctgcaactgaagattgttttgctaagcagccgattctgaacttatcagaacacgtgagatgactagctttgaagagtcatagcaaggtagcaacacgtgtttattactagacgcgagaggattgaattaggttgaatatttcccagctggttacctatcagttccatgctCcctgtgtattgtacttggggaacgggactcttcttgcctctatcagcttgaggtcgtcctcgaggatctcatagtggcggcgcacctcatcggctgtcttggtgcctcccatggcgcgagacaccttgtgaaagaggtcaggcgcaccctcgccgtagtaggcaagagcctcctcgaacagcttgttctcctttttgctccactctgagtccatgttgacactgttgctgttgcgggaggagctgcttgacctagaagacatccttggattggactactgtctttctttGgaag
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| CDS seq | atgtcttctaggtcaagcagctcctcccgcaacagcaacagtgtcaacatggactcagagtggagcaaaaaggagaacaagctgttcgaggaggctcttgcctactacggcgagggtgcgcctgacctctttcacaaggtgtctcgcgccatgggaggcaccaagacagccgatgaggtgcgccgccactatgagatcctcgaggacgacctcaagctgatagaggcaagaagagtcccgttccccaagtacaatacacaggGagcatggaactga |
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| Protein seq | MSSRSSSSSRNSNSVNMDSEWSKKENKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVRRHYEILEDDLKLIEARRVPFPKYNTQGAWN |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027320 | OsLiXu_01g0027320.01 | Chr01 | 28581108 | 28582802 | - | NAM | ||
| CDS seq | atgtcttctaggtcaagcagctcctcccgcaacagcaacagtgtcaacatggactcagagtggagcaaaaaggagaacaagctgttcgaggaggctcttgcctactacggcgagggtgcgcctgacctctttcacaaggtgtctcgcgccatgggaggcaccaagacagccgatgaggtgcgccgccactatgagatcctcgaggacgacctcaagctgatagaggcaagaagagtcccgttccccaagtacaatacacaggGagcatggaactga
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| Protein seq | MSSRSSSSSRNSNSVNMDSEWSKKENKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVRRHYEILEDDLKLIEARRVPFPKYNTQGAWN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.709429 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0663051 | RBH | 1.409729 | 2.068077 | 0.557928 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47370 | RBH | 1.154068 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0663051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028090 | RBH | 0.0 | 0.0 | 5.462671 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027620 | RBH | 0.0 | 0.0 | 4.342742 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028060 | RBH | 0.000000 | 0.0 | 8.204803 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027050 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0450900 | RBH | 0.3286025 | 0.009619 | 0.0150105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026750 | RBH | 0.0 | 0.0 | 0.768403 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0439700 | RBH | 0.2667835 | 0 | 0.015818 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026920 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027020 | RBH | 0.650934 | 0.0 | 2.067327 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027120 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027260 | RBH | 0.0 | 0.0 | 7.419146 |
