Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0027220 | OGI:01082120 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:28520683-28524007 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcctttgcgcttgcggtaagaactgcgcgcgcgcgctcgcctttcccctCCctctctctcccgcgtcccttctccaatccttggcccgagcgaactccagtgaggTtgtccagctgctgTtccggatttctcAaggtgagcctctctccctctcaaaaggtatcgatcgttggggaatcggtttttccggtggtattccgctggcAggttcatgtcgggttgagagaggaatcgtcggtatagctcgctctgtgttgctgctgccgctgggtGgtttcgtgctgtcttggtagttagtaggtggcaaggagcagtcacgtggattaatctagtccgggatggttgggtacttagTtttagctttctgaagcaataaggtatccttgcaaggctggtgatgcagtggtatcagtttgtagtggtattatgtgtcatttGtttataggattaatgataagatggcacgtttttgTtggtttgcttaagctgtggttgaaaccgaaccattctggagttgttgagcagctcatgaaactcccgccaCtgatgttcttcatcagctttcagtttatgtcccaatggatagcatgccttttggaaataaatcggctgattcgacttccttttcaaagaaatccctcttgtaTttgattttgtgcgtttatattcgtttgagatgatctgatctgcaggtcgaagtctggtgccaagacctagccatgggtggcaggaggtatacaatactggcctcatgtgcatcttccttgtgtggttgtatttaatattatgccatcatgatatattcagtgctaaatggcagagttgaattcaatgcaaataaatgtgggacgcatccaacgccaagtaaaccatattatgtggataaaatcgataccaatgaacaaaaggttgtccactatcaagttaaTtgtagaccagcaagagatcgcaataccggttcctactctgtgaagcaccattAcccatctcctattgtttcttggatagaagacctttcgagcttcggcaatgtttcTtttagccaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatagtacgttctgcttCcaTtatcatCcctttgtctcgatttgtgatgtcactacgaagaaactggagTttaagatgaaataactgttttatgcatgttcttcagtcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttgtaagtcccttttagatgaatttgtaggttcgcttcacaaaatggtttgccaatatgataatcatacctaTttttggatttgcattgtgatcttcaatgcttctttgcagagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattctgtacgtcagaaattaaactgttttgaaacatagatacattattaaaTattaatacatcatagccatttttaCatattttgtgcacgcatatctggttgtcacgctctgaagcggtggtttatcttcccaaatgcagtgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatgtaacactcgcaaccattatttacccttttgtcttgatatccttggaactttcatattatcaaatCcaacttaaaatggaacccatgcatgaccttcttgatatgttcatatataatggttgttttagttagcagctcacagattgatttttttcattatcttttccagacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggtaattatatgacagataataatgttttgtctcaaaataaatggtgtatcaatagaaagttcagctcttatcaatttataaaggatggtatgatactttgatgcactgatatgcatcaattttttcctattatagatcttgtgattttaatgtacatagtccgattctagaacgaaagctgcaaactctgaatatattactgttcatgatctttaagtgctctcatatcAGtGTtgtgcgcctcatctgacaaaaaggatttctattggtgtgaagtttgtttagcaagctatcgtagggggctatggagtcatggaatcacatgaataaaatggcaccaaagctcaagagaaaacataacaagacttaacacaccaccctgacatctgcatacactatctatggtgctatccttagttgagcagttgtagttaggcttatagaataaaataatcaaaggtatgcattattatcatttaaaaaggccttaggttccttatttgcattaaaactttgcctgcagtaagacatgtaaacgaagttaattcagttggtgaaagcacgaccaaatcttttgtgcttttggctgtattctaatctagctaggaattactagccactactgcaattattaatctactagctcaggacgactttatcagaaagaaattttggtttgctttgtcattcctctaattctggtagacataaagtgctggatttcttcaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggcaagtattctatggacggttgtacagtttcAatttattattccttttgcttttggtggtgtcccctgccaatttattatcacttacagtgaaatgcatatgctctcaaatcctttaggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctgaacaatgtaattcagcctcaaactctccatgtactccctgcgtgctgccaaaatatgcaagtaaaaaaaaaacaaatgccatgatcgtccaggcaatacggcaatatctgctcatcgtttggatgggttgggtgggcattactaatccatggtatcaactgagctttgatgatggtacagtaatatggtatttgtaagaatgaagtgtaactgggagagagaagaaaagcagtgatgaattgtcttacaacttctggcctttgtaccgacacttctctaaaagaattaaagaccagcactcttggt
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| CDS seq | atgggtggcaggaggtatacaatactggcctcattgctaaatggcagagttgaattcaatgcaaataaatgtgggacgcatccaacgccaagtaaaccatattatgtggataaaatcgataccaatgaacaaaaggttgtccactatcaagttaaTtgtagaccagcaagagatcgcaataccggttcctactctgtgaagcaccattAcccatctcctattgtttcttggatagaagacctttcgagcttcggcaatgtttcTtttagccaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatatcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattcttgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggcaagtattctatggacggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctga
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| Protein seq | MGGRRYTILASLLNGRVEFNANKCGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP |
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| Function | AMSH-like ubiquitin thioesterase 2 [UniProtKB/Swiss-Prot:Q6NKP9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027220 | OsLiXu_01g0027220.01 | Chr01 | 28520683 | 28524007 | + | NAM | ||
| CDS seq | gtcctttgcgcttgcggtaagaactgcgcgcgcgcgctcgcctttcccctCCctctctctcccgcgtcccttctccaatccttggcccgagcgaactccagtgaggTtgtccagctgctgTtccggatttctcAaggtcgaagtctggtgccaagacctagccatgggtggcaggaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatatcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattcttgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggcaagtattctatggacggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctga
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| Protein seq | VLCACGKNCARALAFPLPLSPASLLQSLARANSSEVVQLLFRISQGRSLVPRPSHGWQEDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027220 | OsLiXu_01g0027220.03 | Chr01 | 28520687 | 28524007 | + | NAM | ||
| CDS seq | atgggtggcaggagagttgaattcaatgcaaataaatgtgggacgcatccaacgccaagtaaaccatattatgtggataaaatcgataccaatgaacaaaaggttgtccactatcaagttaaTtgtagaccagcaagagatcgcaataccggttcctactctgtgaagcaccattAcccatctcctattgtttcttggatagaagacctttcgagcttcggcaatgtttcTtttagccaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatatcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattcttgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctga
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| Protein seq | MGGRRVEFNANKCGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027220 | OsLiXu_01g0027220.04 | Chr01 | 28521303 | 28524007 | + | NAM | ||
| CDS seq | atgggtggcaggaggtatacaatactggcctcattgctaaatggcagagttgaattcaatgcaaataaatgtgggacgcatccaacgccaagtaaaccatattatgtggataaaatcgataccaatgaacaaaaggttgtccactatcaagttaaTtgtagaccagcaagagatcgcaataccggttcctactctgtgaagcaccattAcccatctcctattgtttcttggatagaagacctttcgagcttcggcaatgtttcTtttagccaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatatcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattcttgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggcaagtattctatggacggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctga
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| Protein seq | MGGRRYTILASLLNGRVEFNANKCGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0027220 | OsLiXu_01g0027220.02 | Chr01 | 28520684 | 28524007 | + | NAM | ||
| CDS seq | atgggtggcaggagagttgaattcaatgcaaataaatgtgggacgcatccaacgccaagtaaaccatattatgtggataaaatcgataccaatgaacaaaaggttgtccactatcaagttaaTtgtagaccagcaagagatcgcaataccggttcctactctgtgaagcaccattAcccatctcctattgtttcttggatagaagacctttcgagcttcggcaatgtttcTtttagccaggatcctgaatatgctgatgagcaatcaagatcttcagtggggcagtcttcagcatctgtcaatttgcatgacatgcagatatcagttagattgacagatgaattcatcgaacttgcaaaggagaatacaggcaacaatgtagagacttgtggaatcctaggtgcttcatttagagatgggacttactatgtgactatgttgatcataCcaaagcaagaagcaactgctcattcttgccaGgctgtcagtgaggaggagatacatgctattttatcggagcaatcactttaccctgcagggtggatacatacacacccttcacaaacgtgtttcttatcatcaattgatctgcacactcaatactcctaccaggttatgttaccagaggccgttgcgattgtgattgctcccactgatcctactaggcaagtattctatggacggaactgtggaatattcaggctgacagacccaggagggatgggtgtgcttagggagtgcagtgaaagtgggttccacgcccaccgggagacaacggacggcggcccaatctatgaaacctgctccaaggttatattcaacccaaatttgaggttcgagattgttgacctgcgttccgctccctga
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| Protein seq | MGGRRVEFNANKCGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 28521416 | 28521730 | + | OsLiXu_01g0027220.02,OsLiXu_01g0027220.03 | OsLiXu_01g0027220.01,OsLiXu_01g0027220.02,OsLiXu_01g0027220.03 | All |
| A5 | Chr01 | 28523400 | 28523519 | + | OsLiXu_01g0027220.01,OsLiXu_01g0027220.02,OsLiXu_01g0027220.04 | OsLiXu_01g0027220.01,OsLiXu_01g0027220.04,OsLiXu_01g0027220.02,OsLiXu_01g0027220.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.917943 | 1.623463 | 3.689862 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0661500 | RBH | 1.085680 | 2.398883 | 7.090518 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47262 | RBH | 0.725167 | 1.330042 | 1.602956 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0661500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028020 | RBH | 0.926407 | 26.349051 | 16.429098 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027530 | RBH | 0.550020 | 3.061329 | 3.774427 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027980 | RBH | 1.037439 | 2.275269 | 16.473906 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027220 | RBH | 0.224431 | 0.187305 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026950 | RBH | 10.546115 | 15.148528 | 25.488583 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0449000 | RBH | 3.6224915 | 5.9220065 | 17.8007715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026650 | RBH | 0.362881 | 0.378544 | 1.845620 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0438300 | RBH | 13.398451 | 53.0933305 | 16.7097205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026900 | RBH | 0.073557 | 0.627365 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026820 | RBH | 0.207445 | 13.926925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027160 | RBH | 5.812314 | 7.852289 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027030 | RBH | 0.666811 | 4.524386 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027430 | RBH | 0.514789 | 2.843880 | 5.098750 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027180 | RBH | 0.881726 | 42.203762 | 7.989738 |
