Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0024490 | OGI:01075930 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:26069965-26073643 | ||||||||
| Gene Symbol | C3H8, OsC3H8 | ||||||||||
| DNA seq | atatattttagttagatatgctcaacaaagtcaataaaaaaaatactatagcatatgatgtcacctgcacatgaacgcccaaaccgaaaggtgcatatactcaaaatgcatcagctaaaaccactaaataacagggaatacatcagatgccacagagatctacaaagacgacatacctacccaagtagtgcggtttcatgtttaattcatatgcgaggaatgAataaggcatggatttaattcggccttgcgtcaatatatttgtctctcttctcagctccctgaattcgacaccttggcgatagcctcctgagggggtgggtggtcgaacttgcactgcataccaaacttgcacacgccagtcttcatgtagaaggcacataccacggcatcctgcatatcagcatatgcattagtttaggcatcAaaacaaatgctatccaggaggatattcatacatgactacattccgagaatgcatctatgtagctagatgaaagggtgaacaagtgataacacctcttcttatatgatgatgaaaaaagcaatccaaggaacatcatcaagatcgttacaatatgcagggtgacggttacgatatgcagcttactatatcatcaagatcaatgctaacGggagaacatatgtaaaaaatgaaaggactgcagcccaaaaatagtaagatcattggaacgagcggagtagccaaggtattaccgacaagctttgaaatgttacctctcttcttggtaggccagcaagagtaagctgcacagactcctcagcaggctcccagtttgcagagggatcgggagcagaacgatcaattgggtggtgaaacttgcatcggtcagcaaacttgcaaaatcctgtcttcatgtagaactgcattaagaaaagagcataacgctgtagaggcacacccagactatatgcgtaaagtagttgatatcaatcagctagttaataattcatagcgaagagactgtcatacatcacaaacagttgctccaggcctctggggataggtgactggcccaggtccaacctgcattttacaaaagagcatatcaacttgtgtatctcacagcacctatttccaactttaatttcctttgtttactcttacaggcatgtgTGCcgcatgAAaatcaaagccttgcatgaagtttgcagatgaatttagcagcatggattccggagtaGggagaatggtttgacccagtggaagtggaaaatttaaaactgcattgagcaccaaattaccataagaatacatgtcgagtcataagattcaattcatgtaagaatcatgaacactatcagacttgtttaatttagatgcaataacagatatggcagaagagtgcggctatcagattgaagttgttaagttcaaggcatggacagttttgaatgttgaatacaatacaagcttgtttggttcatatggcaagttctctgcttgttttggctttaaaggtacagtagaaaggacacggtcttaaaaataatgtgtccaaaagaagaaaagaaaaagttagtaaaacctggttagtatttgtctaatgtcttcagtattccagtcaaccgtgctgcaactcataacaagatctgatcatttattcatttcataatatttacatcagatataagtagctttacattgCcccatacttgaactaatgaattttaagaaccttgaaggtacctagagaatgaattcattccttctcttattctttaatgcattgtattccttctgcctcgcagtataagaaaccatgcagcggcataagaaaaggttaatggcaacagataccAatttctattgtactgccacatggacttgggatgaataagctgaggtttggtggatgataacagattagaaggaagacaggagtctggatggatcagataaaacagggagaaatagaagtagaggtaaataaacttgtttattccttgctgccaactaagggttgtagagatcctttttcatagccacataaacagataagttcagccaatgcatcagctcacaaactatatctccaacagataagcctaacaacgtatctgagaactaacaaactaattgttgaaaaacagatAaaaatactagaactgataacacaaccaccaccactcaagctcttttacagcagagaagtagggggtgcaaccgagtggaaactatgccacaagtacacccttgatttctgcaaaatattatgAaaaaaatgatcctaaagaaaatgcactaatattatgaaaaagaggagtacaaggctattacgtaagtgctctatccaaccagggcaaattgcaagttaaattatgctattaaatagacgagcagctagatgatggttgccacgctccttctgagaagtggaagaaggccaaaaggatcttaactacctcaaattcatgtcatgataaatttaactttgtgaatatggttagttgtgaccatgagtgacaaacctagacgatcaggatggttgaatcgacaagtagaaccgaacttgcaactgtagagggacaaaaggaaatgtgagattccaagtatctccaaactcatgcagaagtgccagagccaacagaaaatagtgttattctgcttaaggggatacctgcccatcttcatgtaaaaaggacaatcaacttcaccctgccatgaaggagaagagaaggtattaaacaaaacaagcaaaaggtatttcacctagaatcatgtaaatagacaaaaagatttcactatatacaccagtatattgatAaaaatttcagtcttatcaataccccaaaaaacagaacttgttgagagaggaattatgtaccaaaaccatgtaccaggaattgagtacaaaatacagatgtgcggaatctaagcatagagcatcctcaacatcgttatcttgcattacataattcacaggtcttctcaaaatggtttacgaatgaaacaaagttatcaggcacttgataaggacatactggtctcataggcagccctttagagttaaactcttgcgcagcagcaactggagtttgcatcttcgctgaaactgaatcagctgctgaaccaatatccgtttctccttcaacagtcactgcactttcGggttcattttgacttgaaggtatttcaatatccttgggatgattgaacttacacattgcacgaaatttgcatttgcctgtttttgcataaaactgaggtacaaaagcacaactgaaaatcggtttttaagcttgatgccatacaaaaaggaaaagaaggtgcagtagcttcttacagaacaaagtggctcagaaggcctcactggtaagatagaactatcagcaattagatgcttctgcaatttcataaaagagcatacaggttgagacctgagcggttgagatgatgacatgttagtagtctagtaagtaaatggaaacaacttacatcattggtttttccagacgctaatgcattaaccttttcctttggatgattaaacttgcatttcgatccaaacttgcatttaccagtcttcatAaaaaaACTGCATCATCAAGAACAACATTATGAGCATATTTGTCATATTGATTCTAAAATAGGGCTATGAACTGCTTACAGGACAATCTGGTTCCCCTTGTTGTTCTGGATAGGATTCTTCAACAT
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| CDS seq | ATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTtttttTatgaagactggtaaatgcaagtttggatcgaaatgcaagtttaatcatccaaaggaaaaggttaatgcattagcgtctggaaaaaccaatgataagcatctaattgctgatagttctatcttaccagtgaggccttctgagccactttgttctttttatgcaaaaacaggcaaatgcaaatttcgtgcaatgtgtaagttcaatcatcccaaggatattgaaataccttcaagtcaaaatgaaccCgaaagtgcagtgactgttgaaggagaaacggatattggttcagcagctgattcagtttcagcgaagatgcaaactccagttgctgctgcgcaagagtttaactctaaagggctgcctatgagaccaggtgaagttgattgtcctttttacatgaagatgggcagttgcaagttcggttctacttgtcgattcaaccatcctgatcgtctagttttaaattttccacttccactgggtcaaaccattctccCtactccggaatccatgctgctaaattcatctgcaaacttcatgcaaggctttgattTTcatgcgGCAcacatgcctgttggacctgggccagtcacctatccccagaggcctggagcaactgtttgtgatttctacatgaagacaggattttgcaagtttgctgaccgatgcaagtttcaccacccaattgatcgttctgctcccgatccctctgcaaactgggagcctgctgaggagtctgtgcagcttactcttgctggcctaccaagaagagaggatgccgtggtatgtgccttctacatgaagactggcgtgtgcaagtttggtatgcagtgcaagttcgaccacccaccccctcaggaggctatcgccaaggtgtcgaattcagggagctga
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| Protein seq | MLKNPIQNNKGNQIVLFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS |
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| Function | Zinc finger CCCH domain-containing protein 8 [UniProtKB/Swiss-Prot:Q5ZDJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0024490 | OsLiXu_01g0024490.01 | Chr01 | 26069965 | 26073643 | - | NAM | ||
| CDS seq | ATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTtttttTatgaagactggtaaatgcaagtttggatcgaaatgcaagtttaatcatccaaaggaaaaggttaatgcattagcgtctggaaaaaccaatgataagcatctaattgctgatagttctatcttaccagtgaggccttctgagccactttgttctttttatgcaaaaacaggcaaatgcaaatttcgtgcaatgtgtaagttcaatcatcccaaggatattgaaataccttcaagtcaaaatgaaccCgaaagtgcagtgactgttgaaggagaaacggatattggttcagcagctgattcagtttcagcgaagatgcaaactccagttgctgctgcgcaagagtttaactctaaagggctgcctatgagaccaggtgaagttgattgtcctttttacatgaagatgggcagttgcaagttcggttctacttgtcgattcaaccatcctgatcgtctagttttaaattttccacttccactgggtcaaaccattctccCtactccggaatccatgctgctaaattcatctgcaaacttcatgcaaggctttgattTTcatgcgGCAcacatgcctgttggacctgggccagtcacctatccccagaggcctggagcaactgtttgtgatttctacatgaagacaggattttgcaagtttgctgaccgatgcaagtttcaccacccaattgatcgttctgctcccgatccctctgcaaactgggagcctgctgaggagtctgtgcagcttactcttgctggcctaccaagaagagaggatgccgtggtatgtgccttctacatgaagactggcgtgtgcaagtttggtatgcagtgcaagttcgaccacccaccccctcaggaggctatcgccaaggtgtcgaattcagggagctga
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| Protein seq | MLKNPIQNNKGNQIVLFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.458640 | 0.675582 | 1.105029 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0616400 | RBH | 1.628881 | 1.403358 | 4.116314 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g42970 | RBH | 1.156784 | 0.939599 | 1.145278 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0616400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025290 | RBH | 0.254107 | 3.131669 | 7.580993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024920 | RBH | 0.397448 | 5.183992 | 2.225233 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025240 | RBH | 1.902058 | 7.435653 | 6.243529 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024580 | RBH | 0.244548 | 0.604429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024310 | RBH | 2.194587 | 1.194383 | 14.477201 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0411300 | RBH | 9.246558 | 25.665588 | 31.1953565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023990 | RBH | 0.347599 | 0.648000 | 0.902250 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0399700 | RBH | 7.1932735 | 20.168069 | 23.1304935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024250 | RBH | 0.151730 | 0.378963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024250 | RBH | 0.103177 | 7.794608 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024480 | RBH | 4.645548 | 12.940882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024370 | SBH | 0.479259 | 2.347023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024630 | RBH | 0.391598 | 4.883447 | 4.416601 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024370 | RBH | 2.181796 | 19.948076 | 24.501778 |
