Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0023500 | OGI:01040660 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:25076217-25077653 | ||||||||
| Gene Symbol | PTR, - | ||||||||||
| DNA seq | ctacgcctcctccatgaccaccgccgcctccacaagcgccgccgcttgtccacgagcaccgccacctccgcgagcactgccgccactcctctcagatccgggagccgcctcgccaccgtgcccgccgctgcctccacgagccgccacctccgcgagcaccgccaccacgagcgccgccacctccgcgagcaccgccggcgctcctctcaaatccgggagccgcctcgcctccgcacccgccgccgcctccgcctcgtccacgaccgccgcttgtccacaaccgccgccacctccgcgagcgccgccgccgctgctcctctcagatccgggcaccgccgagctactccgccccccgacagcactaacggtgagtacaaatttgtgcatcccatcccacctcaatcccttctaccaaacagaaaactataaccatcccataccataaaccaaacagataactggaaccatcccatcccataaaactaggataggtctaacccatcccacttcatccctaaaccaaacactaccttacatcaaaagttggctgtcgaggaaggatgtgcaccagagcacacgccccaaaccatgtgccaaccgcccaaacacacgctatagAaagggaagccaagcaccgaaccggccatcgctatgcgagaccgatcaccaccagaccaacaacaccactacgacacgaagactctAaaacgacaccctcacaagggttgtggcgccaaaagacgccgtcatcatccgtccaaagctggacaaggttttcactcagagttccttgccgagggaggaggggtacctcaacaatgccttcaggagggttaccacgcccgaaggcgtaatcactgttggcccaaagaaattgggctaagctttcgctcgaaaCcccttaccgccgtggtccgtcgcccaatccgaaaccaccatctaaacattggtggcacatggcttccgccatacccgaccgacgcccctccgccggtcaacttccagtcctgccaacgacaagactgccaccacactgcaccgacgccccaccatcagctgacttcatcgaaccaccatccctgagagttggcccaggacccctccattccaccactcgccggcctcctcgccagatctggccaaagaagaacccGggactaggcggcattgcttcggcatcctgacattcccctgctgacaacctgccgcctcaatccaacctagaaactcctcacaaagaagggagggagctccaagaagggcgagggtgccgaccggcaacgaggaaggcgacccaccgccaccagctccctttgcactaccatctgggcctgcgccgacgccggaaacgctgccgctccggctccagcgcccaaccacggtccaacctccatgccggcctctgcgcctccgctgctccagcctccgcgtagccat
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| CDS seq | atggctacgcggaggctggagcagcggaggcgcagaggccggcatggaggttggaccgtggttgggcgctggagccggagcggcagcgtttccggcgtcggcgcaggcccagatggtagtgcaaagggagctggtggcggtgggtcgccttcctcgttgccggtcggcaccctcgcccttcttggagctccctcccttctttgtgaggagtttctaggttggattgaggcggcaggttgtcagcaggggaatgtcaggatgccgaagcaatgccgcctagtccCgggtggcggcggttgtggacaagcggcggtcgtggacgaggcggaggcggcggcgggtgcggaggcgaggcggctcccggatttgagaggagcgccggcggtgctcgcggaggtggcggcgctcgtggtggcggtgctcgcggaggtggcggctcgtggaggcagcggcgggcacggtggcgaggcggctcccggatctgagaggagtggcggcagtgctcgcggaggtggcggtgctcgtggacaagcggcggcgcttgtggaggcggcggtggtcatggaggaggcgtag
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| Protein seq | MATRRLEQRRRRGRHGGWTVVGRWSRSGSVSGVGAGPDGSAKGAGGGGSPSSLPVGTLALLGAPSLLCEEFLGWIEAAGCQQGNVRMPKQCRLVPGGGGCGQAAVVDEAEAAAGAEARRLPDLRGAPAVLAEVAALVVAVLAEVAARGGSGGHGGEAAPGSERSGGSARGGGGARGQAAALVEAAVVMEEA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0023500 | OsLiXu_01g0023500.01 | Chr01 | 25076217 | 25077653 | - | NAM | ||
| CDS seq | atggctacgcggaggctggagcagcggaggcgcagaggccggcatggaggttggaccgtggttgggcgctggagccggagcggcagcgtttccggcgtcggcgcaggcccagatggtagtgcaaagggagctggtggcggtgggtcgccttcctcgttgccggtcggcaccctcgcccttcttggagctccctcccttctttgtgaggagtttctaggttggattgaggcggcaggttgtcagcaggggaatgtcaggatgccgaagcaatgccgcctagtccCgggtggcggcggttgtggacaagcggcggtcgtggacgaggcggaggcggcggcgggtgcggaggcgaggcggctcccggatttgagaggagcgccggcggtgctcgcggaggtggcggcgctcgtggtggcggtgctcgcggaggtggcggctcgtggaggcagcggcgggcacggtggcgaggcggctcccggatctgagaggagtggcggcagtgctcgcggaggtggcggtgctcgtggacaagcggcggcgcttgtggaggcggcggtggtcatggaggaggcgtag
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| Protein seq | MATRRLEQRRRRGRHGGWTVVGRWSRSGSVSGVGAGPDGSAKGAGGGGSPSSLPVGTLALLGAPSLLCEEFLGWIEAAGCQQGNVRMPKQCRLVPGGGGCGQAAVVDEAEAAAGAEARRLPDLRGAPAVLAEVAALVVAVLAEVAARGGSGGHGGEAAPGSERSGGSARGGGGARGQAAALVEAAVVMEEA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024320 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023340 | RBH | 2.177668 | 2.413063 | 7.399495 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0395900 | SBH | 0.0608085 | 0.2404945 | 0.178562 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385200 | SBH | 0.4181225 | 0.199026 | 0.2980725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
