Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0022180 | OGI:01070240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:23928509-23932621 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaaagggaatcgctaaaatactgtaccaaTttcccaagtaccttagctcactggaactctatcgcaaaacaacaaacaaatatggaataTttgtgttaataaTtagagtaaggttttcagaaagtgctacaactaacttcaaaaggaatttaataccataatatagtcataatcaagtacaagaaatggcctgtttggtacagctccaactcctaaatattactctaggagtaGtatatttagtatattttgtgagagagcttcagccAactccacTcccagttttggtgacgctgaaactatttggctgaactccagctccaggaggggtgaagctggagttggagctgtgccaaacaggcccaaaccatagtacataggctgaccttaatctttcattttcctctttttctcttcagagatttatccttaaccataacatgtggagccttcttaacaacacagtttgctatgtagcagtaatagggggtactggagatctccatcgtagaaactcaaaattgccTtcataaaaggcactagtcttattaagcacatcatctgctGttatttttcgcagcccatctttgaccgaataacccgaaatagtcttgtacccactgttgcacagatGgaaagggccatcagtgtggtgagacaaaatagtaatggcggctatcactggaaacgtcccatgaatgctcaccacagacaagaagctgaaaattccactgctttcctgatgaactccaacgtgtgacgccagaacttcacatcaaggttagctcgtaacagtctcgcaaacatgtttgcagctaggaaagcacctttgatctgcgttgcaatcctcctgaggatttgtattagctcctgatgctcttctgaatttgaacttccataggtaaagggctcggaagaagtaccagaactcatgctgacggagcctcttcagcttgagtgcttgtgtcgtccccaaccttgagatggtgtccactctgctgataattatgattttgctgcaaccactgtcaataatggatgagcagaatcctctccaagactcatcgtcgatctcgtcattgacagcctcaactacaaccaaggacatcatcacactagaagcgactagctcccttcccttgatgaaactttcatgattctcttgattgtactcatcaactctgcctccctcctatgtactccctccgtattttaaTatatgacgccattgattttttgacaaacgtttgacatttcgtcttattcaaaaaatgtgtataattataatttattttgttgtgacttgatttatcatcaaatgttctttaagcatgacataagtatttttatgtttgcataaaaTTtttgaacaagacgagtggccaaacattggttaaaaagtcaacggcgtcatacattaaaatatagagggagtatcaattatctctgtaattcaccatgttaaatattatggtattgactttgctttgcccggtagttcgatccaaatttcatgcatggatctcatccgcagccatggatgtttaatttcttctttcttttgaatcgtccaagattacaactattagtgttgactcgtgagtgtctttgatccatataatcctgaggaagcttctaggcgggcctacggttagcataagtaaagacacattttcttcccTtttatttcacgggcaagaaaatttatggagttttttctttagataatggagttaatttatgggtgactttagtgcttcaccgtaccaaattttaatcgagaaaattcattatttgccactcacaattactcagtctacttgcttaccattattcatacttagtttttcccattatattccactcttgtcctgttaaattatgcgagcaagcattgaactttgtgcccttatttgaagttcccatgacctagaagaagaaaCcccgggatgagatcctctgactttcatgtaaagttagagagctatagtgccataactttagagctatttttagccgtcggatccaccacaaacgaacaagatcgatcggtacagtaatttggtgaacaatatctctgtacagtaaaatccactgctttatactgttgctacagtaataaactgcacggtactgttttgcattgtagcacaagacttAaaatactgtgcttccctgactttagatgcgaggagccggttccagaaaCcccctgtactgagttttggcacgtggggccaaaaggatAaaaaaaaagagatcattttttccgaatgaaacattgctttggttgagtttgcagggttcccaaccaacgcgagattaattaaatattaacttaaaaaattgaaaaatagattaatatgatttttttaaaaaacagtttttctataaaaaatttttgtAaaaaacataccgttcagtagtttgaaaagcgtacacgtggaaaacaaggaggggagttgggaactctaaagaaacaaactcagcctctgtttggttcgctagagtccactggattaatgctgtcatcacttggtatcagtttcagagtgctaagagtagaagtgtagaagtaaaagtgaaaaaagtacaaataaccaagctaacatcactatagtcaacaccaaatacagAaattgttgtgtacatagagtgacactaaactttcatattcctctcctcctcttcagagatttatctttaggctgcacaatctgtggagccttcttaacaacacagtttgctattggagacttccatcgtaggatatcaaaactgccttcagaaaaggcattggttctgatcagcatgtcatctgctattattcttggtagttcatcattcaccaaacaaccagctgcaacagttttgtacccatcattgcacagatggagagggccatcactgtgaccagacagatagtagtggcggctattgctaacaatgtcccaactcccaccacaggcaagaagctgaagttccactgctttcttgatgaacctccatgtgtaactccaaaactttacattcaggttagctcgtagcaatcttgcaaatatgttagcagctatggaagcacctttgatctgtgttgcaatcctcctggcgatacgcagtagctctggatgttcttccggatctgcagttccaaaggcaatggttcggaagaagtaccagaactcgtggcgtttgagcctcttgagcttgagtgcttgtgttgtccctaaccTtgagatcgtctccgatctACtgatgactatcattttgctgcaaccatttgcaatggatgagcagaatcctctccatgtctcgtcactgatatcgtcgttgacaagctcaacgacaaccagagacatggtactagaagcaaccagctcacttgtcttgaagaaactttcttgattctcttcattgttcaaatcatcgctcttgaaacgaacaacccgtgagaaatgctcgcgcacgctctcctcgttgcagacgtgctcgatcagcgtgttcttcccgacttctcgggggcggatgattggaagaacacgcaaaggagaatcacaaggttgaagcagaaattcacggatcagctctttctcttcgtgccgaccaaacatgcacttctccctgaacaggtgagtgtcgtatggccgctgaggcaagcatgggcagcctagcaagaacacaacaaactccttcttcgagtcatcgatggcagcttccaaatcctccatggcagcctgaagcttcttcagtttgagggatgatgatgatcgccttcgtttaccggtgatgtgctgttcttggaaggcgttgagaatgtagtagccttggtacatgctctgcattagctgcctgagctgtaggagcataccttggttggagatctgccggccatgggcttcctcgacgatggttcttgctctgaggagcagccattgcagacgctcaagcttatgatcggcggtgctttggttgctgtacttcgtgatgagggaggagatgaggcggctgataatgtcactggcaactacagataagagtgtgtccatttctagtggaaatcaaatcgattcgaagttaaacggatgccttgatgggaataggttcgaatcct
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| CDS seq | atggacacactcttatctgtagttgccagtgacattatcagccgcctcatctcctccctcatcacgaagtacagcaaccaaagcaccgccgatcataagcttgagcgtctgcaatggctgctcctcagagcaagaaccatcgtcgaggaagcccatggccggcagatctccaaccaaggtatgctcctacagctcaggcagctaatgcagagcatgtaccaaggctactacattctcaacgccttccaagaacagcacatcaccggtaaacgaaggcgatcatcatcatccctcaaactgaagaagcttcaggctgccatggaggatttggaagctgccatcgatgactcgaagaaggagtttgttgtgttcttgctaggctgcccatgcttgcctcagcggccatacgacactcacctgttcagggagaagtgcatgtttggtcggcacgaagagaaagagctgatccgtgaatttctgcttcaaccttgtgattctcctttgcgtgttcttccaatcatccgcccccgagaagtcgggaagaacacgctgatcgagcacgtctgcaacgaggagagcgtgcgcgagcatttctcacgggttgttcgtttcaagagcgatgatttgaacaatgaagagaatcaagaaagtttcttcaagacaagtgagctggttgcttctagtaccatgtctctggttgtcgttgagcttgtcaacgacgatatcagtgacgagacatggagaggattctgctcatccattgcaaatggttgcagcaaaatgatagtcatcaGTagatcggagacgatctcaAggttagggacaacacaagcactcaagctcaagaggctcaaacgccacgagttctggtacttcttccgaaccattgcctttggaactgcagatccggaagaacatccagagctactgcgtatcgccaggaggattgcaacacagatcaaaggtgcttccatagctgctaacatatttgcaagattgctacgagctaacctgaatgtaaagttttggagttacacatggaggttcatcaagaaagcagtggaacttcagcttcttgcctgtggtgggagttgggacattgttagcaatagccgccactactatctgtctggtcacagtgatggccctctccatctgtgcaatgatgggtacaaaactgttgcagctggttgtttggtgaatgatgaactaccaagaataatagcagatgacatgctgatcagaaccaatgccttttctgaaggcagttttgatatcctacgatggaagtctccaatagcaaactgtgttgttaagaaggctccacagattgctgtcaatgacgagatcgacgatgagtcttggagaggattctgctcatccattattgacagtggttgcagcaaaatcataattatcagcagagtggacaccatctcaaggttggggacgacacaagcactcaagctgaagaggctccgtcagcatgagttctggtacttcttccgagccctttacctatggaagttcaaattcagaagagcatcaggagctaatacaaatcctcaggaggattgcaacgcagatcaaaggtgctttcctagctgcaaacatgaaagcagtggaattttcagcttcttgtctgtggtgagcattcatgggacgtttccagtgatagccgccattactattttgtctcaccacactgatggccctttcCatctgtgcaacagtgggtacaagactatttcgggttattcggtcaaagatgggctgcgaaaaataaCagcagatgatgtgcttaataagactagtgccttttatgaAggcaattttgagtttctacgatggagatctccaagttccagtgagctaaggtacttgggaaAttggtacagtattttagcgattcccttttaa
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| Protein seq | MDTLLSVVASDIISRLISSLITKYSNQSTADHKLERLQWLLLRARTIVEEAHGRQISNQGMLLQLRQLMQSMYQGYYILNAFQEQHITGKRRRSSSSLKLKKLQAAMEDLEAAIDDSKKEFVVFLLGCPCLPQRPYDTHLFREKCMFGRHEEKELIREFLLQPCDSPLRVLPIIRPREVGKNTLIEHVCNEESVREHFSRVVRFKSDDLNNEENQESFFKTSELVASSTMSLVVVELVNDDISDETWRGFCSSIANGCSKMIVISRSETISRLGTTQALKLKRLKRHEFWYFFRTIAFGTADPEEHPELLRIARRIATQIKGASIAANIFARLLRANLNVKFWSYTWRFIKKAVELQLLACGGSWDIVSNSRHYYLSGHSDGPLHLCNDGYKTVAAGCLVNDELPRIIADDMLIRTNAFSEGSFDILRWKSPIANCVVKKAPQIAVNDEIDDESWRGFCSSIIDSGCSKIIIISRVDTISRLGTTQALKLKRLRQHEFWYFFRALYLWKFKFRRASGANTNPQEDCNADQRCFPSCKHESSGIFSFLSVVSIHGTFPVIAAITILSHHTDGPFHLCNSGYKTISGYSVKDGLRKITADDVLNKTSAFYEGNFEFLRWRSPSSSELRYLGNWYSILAIPF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0022180 | OsLiXu_01g0022180.01 | Chr01 | 23928509 | 23932621 | - | NAM | ||
| CDS seq | atggacacactcttatctgtagttgccagtgacattatcagccgcctcatctcctccctcatcacgaagtacagcaaccaaagcaccgccgatcataagcttgagcgtctgcaatggctgctcctcagagcaagaaccatcgtcgaggaagcccatggccggcagatctccaaccaaggtatgctcctacagctcaggcagctaatgcagagcatgtaccaaggctactacattctcaacgccttccaagaacagcacatcaccggtaaacgaaggcgatcatcatcatccctcaaactgaagaagcttcaggctgccatggaggatttggaagctgccatcgatgactcgaagaaggagtttgttgtgttcttgctaggctgcccatgcttgcctcagcggccatacgacactcacctgttcagggagaagtgcatgtttggtcggcacgaagagaaagagctgatccgtgaatttctgcttcaaccttgtgattctcctttgcgtgttcttccaatcatccgcccccgagaagtcgggaagaacacgctgatcgagcacgtctgcaacgaggagagcgtgcgcgagcatttctcacgggttgttcgtttcaagagcgatgatttgaacaatgaagagaatcaagaaagtttcttcaagacaagtgagctggttgcttctagtaccatgtctctggttgtcgttgagcttgtcaacgacgatatcagtgacgagacatggagaggattctgctcatccattgcaaatggttgcagcaaaatgatagtcatcaGTagatcggagacgatctcaAggttagggacaacacaagcactcaagctcaagaggctcaaacgccacgagttctggtacttcttccgaaccattgcctttggaactgcagatccggaagaacatccagagctactgcgtatcgccaggaggattgcaacacagatcaaaggtgcttccatagctgctaacatatttgcaagattgctacgagctaacctgaatgtaaagttttggagttacacatggaggttcatcaagaaagcagtggaacttcagcttcttgcctgtggtgggagttgggacattgttagcaatagccgccactactatctgtctggtcacagtgatggccctctccatctgtgcaatgatgggtacaaaactgttgcagctggttgtttggtgaatgatgaactaccaagaataatagcagatgacatgctgatcagaaccaatgccttttctgaaggcagttttgatatcctacgatggaagtctccaatagcaaactgtgttgttaagaaggctccacagattgctgtcaatgacgagatcgacgatgagtcttggagaggattctgctcatccattattgacagtggttgcagcaaaatcataattatcagcagagtggacaccatctcaaggttggggacgacacaagcactcaagctgaagaggctccgtcagcatgagttctggtacttcttccgagccctttacctatggaagttcaaattcagaagagcatcaggagctaatacaaatcctcaggaggattgcaacgcagatcaaaggtgctttcctagctgcaaacatgaaagcagtggaattttcagcttcttgtctgtggtgagcattcatgggacgtttccagtgatagccgccattactattttgtctcaccacactgatggccctttcCatctgtgcaacagtgggtacaagactatttcgggttattcggtcaaagatgggctgcgaaaaataaCagcagatgatgtgcttaataagactagtgccttttatgaAggcaattttgagtttctacgatggagatctccaagttccagtgagctaaggtacttgggaaAttggtacagtattttagcgattcccttttaa
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| Protein seq | MDTLLSVVASDIISRLISSLITKYSNQSTADHKLERLQWLLLRARTIVEEAHGRQISNQGMLLQLRQLMQSMYQGYYILNAFQEQHITGKRRRSSSSLKLKKLQAAMEDLEAAIDDSKKEFVVFLLGCPCLPQRPYDTHLFREKCMFGRHEEKELIREFLLQPCDSPLRVLPIIRPREVGKNTLIEHVCNEESVREHFSRVVRFKSDDLNNEENQESFFKTSELVASSTMSLVVVELVNDDISDETWRGFCSSIANGCSKMIVISRSETISRLGTTQALKLKRLKRHEFWYFFRTIAFGTADPEEHPELLRIARRIATQIKGASIAANIFARLLRANLNVKFWSYTWRFIKKAVELQLLACGGSWDIVSNSRHYYLSGHSDGPLHLCNDGYKTVAAGCLVNDELPRIIADDMLIRTNAFSEGSFDILRWKSPIANCVVKKAPQIAVNDEIDDESWRGFCSSIIDSGCSKIIIISRVDTISRLGTTQALKLKRLRQHEFWYFFRALYLWKFKFRRASGANTNPQEDCNADQRCFPSCKHESSGIFSFLSVVSIHGTFPVIAAITILSHHTDGPFHLCNSGYKTISGYSVKDGLRKITADDVLNKTSAFYEGNFEFLRWRSPSSSELRYLGNWYSILAIPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0581800 | RBH | 0.0 | 0.0 | 0.359901 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g39990 | RBH | 0.0 | 0.0 | 0.092646 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0581800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022530 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022860 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0377200 | RBH | 0.0763505 | 0.058094 | 0.1470915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021920 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0365800 | RBH | 0.17432 | 0.153774 | 0.0538425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021960 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021950 | RBH | 0.0 | 0.0 | 0.0 |
