Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0021650 | OGI:01069010 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:23353812-23356919 | ||||||||
| Gene Symbol | IDD11, OsIDD11 | ||||||||||
| DNA seq | atgtttcatcaccatcttcagcagcagcagcagcagcaggaggaggaGGgaggaggaTtgttcttggtggaagaggCcgccgaggcagcagatcagcagcaggagagcagcatgtccaacctgacctcctccgcctccaccgcgccgccgccgccgccgccatcctccggcaacaacggcaacaacagcaacaagaGgaagcgcagcctcccgggcaacccaggtgcgttcttgtatagcaagctcctcgatcgatccgggctccgttaattttctcggcAattaagcgAaagcaattgatcgaacctatatatagacccggaggcggaggtggtggcgctgtcgccggcgacgctgatggcgacgaacaggttCgtgtgcgagatctgcgggaaggggttccagagggaccagaacctgcAgctgcaccggcgggggcacaacctgccgtggaagctgaagcagcgggggagcaaggaggcGgtgaggaagaaggtgtacatctgcccggaggccagctgcgtccaccacgacccctcccgcgccctcggcgacctcaccggcatcaagaagcacttcttccgcaagcacggcgagaagaagtGGaagtgcgacaagtgctccaagaagtacgccgtccactccgactggaaggcccactccaagatctgcggcAcccgcgagtacaagtgcgattgcggcaccatcttctccaggtccttcttcttCctccctcctcctccatcttgcttgcttccatccatccatggcgatcgattgcagcacttgcactcctactgccttctgctcagatatacctgccttGgctggcttgccgtgctcctttctcattgccactttgccagtaatccagtgttcttgctgccgcctgcGctttcagttggcacagtgacgagtaGgAatcgaagcagcctataagatGAgcgtttgttagtgttaacacacctgtAatcatccaataattagggcagcgatagatataccggttgttgattaaccagcaacaaccatgtgcccatccctgccgcgagcatctagccgaaaagatttgtgaacagtggcaactagtacgtagcttagctagctgctcgctgcagcagcgaaacaagcaaagaaaagaagccatatcgatcgatcgacatcgacatcgagatcgagattggagtcgtttcttgcctcttcttcttctttttgtttcttggcttgtgctgccactgccatccatggctgaaacctcctttggattgatccgggctgatgaatgcgcacggtgcagaacccgatggagacgacgacgacgatgacgacgacgctactagtggtagctaggttggtggtagtactactggcttgtgcgtatgcgcgtgtctgtttgcattgcgtccgtgtgatgagagagagaaatgagagattgggAaaACAAACAAGCAGCAAAGCTATTTGCCCATAGGACAAAAGGAAAGCAAAGCTATGCCCATAGGACAAAGGAAGGAGGGGAGATCTGAGCTTGATGATGATGAGCTATGGCTAGCTAGCTGTGGTGGCAGCTGATGATGCTGAGCCATGGAGGAAGAAAGAGAGGAGGAGGAGGAAGAAAGAGAGACATGTGAATCTCTTTGCAGTCGTCTGCATCCTGCTCCTGCATGGATGGATGGATGGCTTTTCCATCTCTCTCTCTCCCCctctctctcccaggctttgcctattctgttcatcctagccactattcctcctgcctaattgcctactccactctactctgcaagagtgttcatgcatggctatctctctgtgttgtcacttccatggagttcattctagcttgagcatctctctctatcctttttttttttgagatggctataggtgtagtaggagtgtagaagcaacaatgacaagtgagcaagaatacgggggaaatatgatatctttggcttttggccttttgaaatttgatgttttttggttttggtgtgatccgtgtggtttttgatgtgtgtgtctttcggttcttgcattgcatgcaggcgtgacagcttcatcacgcaccgggcgttctgcgacgcgctcaccgaggagagcgccaaggcCAtcggcggcatccccgccgccatggccgcgccggggcaccaccaccaccaccaccagctgctcttctcgccgccgccggtcatggcgcaccaccaggagctcgccgcgctgcaggagcagcagcagcagcagcatcaccaggAtgtcatgcagtcgccgcaccagcatcagcagcagctggtgcagcagaactgcgggtacgccgtgaagccggagatggcgccgtggccgacgacgatgccctacgaccaccaccacccgctgctgcagccgctctgcaacgccaacgccgccgccacggcgcagagctcggccacgtccgcgccaccgacgacgccgcagctgcccgccgccgccgccgccgcgcacctgtccgccacggcgctgctgcagaaggcggcgcagatgggcgcgaccatcggcggcgcgggcaccggcgccgcgggcgcgcactacgcccacatggcgtccccggcgggcgcgggcgcgccggccggcggcagcgccaccttcggcctcggcctgtcgtgcctcaacacccaccaggacggcggcggcggcggaggcaacggcctcatcccggccgggatgatgggccacctcgcaagaaccgcctcccacggccggagcggcgaggacgtcgccggcgccggcggcggtggcggcgacggcatgacgagggacttcctcGgcctccgcgccttctcccaccgcgacatcctcctcgccggcttcgactcgtcgtgcatgggccacgtgaacgccgccgccggcatggccggctacgagccaccaccaccgcaccatggacagccacagcaccagcaccagcagcagcagcagcaacagcaaggcggcagcaacgagccatggcatggcatgggcagccatagctaagctaagctactttagccatagccatttcttcttgcttcctctcatcagctagccatgcatcacacttgccaccaccaccattgccttgctcttagctag
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| CDS seq | atgtttcatcaccatcttcagcagcagcagcagcagcaggaggaggaGGgaggaggaTtgttcttggtggaagaggCcgccgaggcagcagatcagcagcaggagagcagcatgtccaacctgacctcctccgcctccaccgcgccgccgccgccgccgccatcctccggcaacaacggcaacaacagcaacaagaGgaagcgcagcctcccgggcaacccagacccggaggcggaggtggtggcgctgtcgccggcgacgctgatggcgacgaacaggttCgtgtgcgagatctgcgggaaggggttccagagggaccagaacctgcAgctgcaccggcgggggcacaacctgccgtggaagctgaagcagcgggggagcaaggaggcGgtgaggaagaaggtgtacatctgcccggaggccagctgcgtccaccacgacccctcccgcgccctcggcgacctcaccggcatcaagaagcacttcttccgcaagcacggcgagaagaagtGGaagtgcgacaagtgctccaagaagtacgccgtccactccgactggaaggcccactccaagatctgcggcAcccgcgagtacaagtgcgattgcggcaccatcttctccaggcgtgacagcttcatcacgcaccgggcgttctgcgacgcgctcaccgaggagagcgccaaggcCAtcggcggcatccccgccgccatggccgcgccggggcaccaccaccaccaccaccagctgctcttctcgccgccgccggtcatggcgcaccaccaggagctcgccgcgctgcaggagcagcagcagcagcagcatcaccaggAtgtcatgcagtcgccgcaccagcatcagcagcagctggtgcagcagaactgcgggtacgccgtgaagccggagatggcgccgtggccgacgacgatgccctacgaccaccaccacccgctgctgcagccgctctgcaacgccaacgccgccgccacggcgcagagctcggccacgtccgcgccaccgacgacgccgcagctgcccgccgccgccgccgccgcgcacctgtccgccacggcgctgctgcagaaggcggcgcagatgggcgcgaccatcggcggcgcgggcaccggcgccgcgggcgcgcactacgcccacatggcgtccccggcgggcgcgggcgcgccggccggcggcagcgccaccttcggcctcggcctgtcgtgcctcaacacccaccaggacggcggcggcggcggaggcaacggcctcatcccggccgggatgatgggccacctcgcaagaaccgcctcccacggccggagcggcgaggacgtcgccggcgccggcggcggtggcggcgacggcatgacgagggacttcctcGgcctccgcgccttctcccaccgcgacatcctcctcgccggcttcgactcgtcgtgcatgggccacgtgaacgccgccgccggcatggccggctacgagccaccaccaccgcaccatggacagccacagcaccagcaccagcagcagcagcagcaacagcaaggcggcagcaacgagccatggcatggcatgggcagccatagc
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| Protein seq | MFHHHLQQQQQQQEEEGGGLFLVEEAAEAADQQQESSMSNLTSSASTAPPPPPPSSGNNGNNSNKRKRSLPGNPDPEAEVVALSPATLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRGSKEAVRKKVYICPEASCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEESAKAIGGIPAAMAAPGHHHHHHQLLFSPPPVMAHHQELAALQEQQQQQHHQDVMQSPHQHQQQLVQQNCGYAVKPEMAPWPTTMPYDHHHPLLQPLCNANAAATAQSSATSAPPTTPQLPAAAAAAHLSATALLQKAAQMGATIGGAGTGAAGAHYAHMASPAGAGAPAGGSATFGLGLSCLNTHQDGGGGGGNGLIPAGMMGHLARTASHGRSGEDVAGAGGGGGDGMTRDFLGLRAFSHRDILLAGFDSSCMGHVNAAAGMAGYEPPPPHHGQPQHQHQQQQQQQQGGSNEPWHGMGSHS |
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| Function | Protein indeterminate-domain 7 [UniProtKB/Swiss-Prot:Q8H1F5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0021650 | OsLiXu_01g0021650.01 | Chr01 | 23353812 | 23356919 | + | NAM | ||
| CDS seq | atgtttcatcaccatcttcagcagcagcagcagcagcaggaggaggaGGgaggaggaTtgttcttggtggaagaggCcgccgaggcagcagatcagcagcaggagagcagcatgtccaacctgacctcctccgcctccaccgcgccgccgccgccgccgccatcctccggcaacaacggcaacaacagcaacaagaGgaagcgcagcctcccgggcaacccagacccggaggcggaggtggtggcgctgtcgccggcgacgctgatggcgacgaacaggttCgtgtgcgagatctgcgggaaggggttccagagggaccagaacctgcAgctgcaccggcgggggcacaacctgccgtggaagctgaagcagcgggggagcaaggaggcGgtgaggaagaaggtgtacatctgcccggaggccagctgcgtccaccacgacccctcccgcgccctcggcgacctcaccggcatcaagaagcacttcttccgcaagcacggcgagaagaagtGGaagtgcgacaagtgctccaagaagtacgccgtccactccgactggaaggcccactccaagatctgcggcAcccgcgagtacaagtgcgattgcggcaccatcttctccaggcgtgacagcttcatcacgcaccgggcgttctgcgacgcgctcaccgaggagagcgccaaggcCAtcggcggcatccccgccgccatggccgcgccggggcaccaccaccaccaccaccagctgctcttctcgccgccgccggtcatggcgcaccaccaggagctcgccgcgctgcaggagcagcagcagcagcagcatcaccaggAtgtcatgcagtcgccgcaccagcatcagcagcagctggtgcagcagaactgcgggtacgccgtgaagccggagatggcgccgtggccgacgacgatgccctacgaccaccaccacccgctgctgcagccgctctgcaacgccaacgccgccgccacggcgcagagctcggccacgtccgcgccaccgacgacgccgcagctgcccgccgccgccgccgccgcgcacctgtccgccacggcgctgctgcagaaggcggcgcagatgggcgcgaccatcggcggcgcgggcaccggcgccgcgggcgcgcactacgcccacatggcgtccccggcgggcgcgggcgcgccggccggcggcagcgccaccttcggcctcggcctgtcgtgcctcaacacccaccaggacggcggcggcggcggaggcaacggcctcatcccggccgggatgatgggccacctcgcaagaaccgcctcccacggccggagcggcgaggacgtcgccggcgccggcggcggtggcggcgacggcatgacgagggacttcctcGgcctccgcgccttctcccaccgcgacatcctcctcgccggcttcgactcgtcgtgcatgggccacgtgaacgccgccgccggcatggccggctacgagccaccaccaccgcaccatggacagccacagcaccagcaccagcagcagcagcagcaacagcaaggcggcagcaacgagccatggcatggcatgggcagccatagc
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| Protein seq | MFHHHLQQQQQQQEEEGGGLFLVEEAAEAADQQQESSMSNLTSSASTAPPPPPPSSGNNGNNSNKRKRSLPGNPDPEAEVVALSPATLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRGSKEAVRKKVYICPEASCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEESAKAIGGIPAAMAAPGHHHHHHQLLFSPPPVMAHHQELAALQEQQQQQHHQDVMQSPHQHQQQLVQQNCGYAVKPEMAPWPTTMPYDHHHPLLQPLCNANAAATAQSSATSAPPTTPQLPAAAAAAHLSATALLQKAAQMGATIGGAGTGAAGAHYAHMASPAGAGAPAGGSATFGLGLSCLNTHQDGGGGGGNGLIPAGMMGHLARTASHGRSGEDVAGAGGGGGDGMTRDFLGLRAFSHRDILLAGFDSSCMGHVNAAAGMAGYEPPPPHHGQPQHQHQQQQQQQQGGSNEPWHGMGSHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.101809 | 0.965212 | 0.741901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0572300 | RBH | 0.180543 | 0.000000 | 1.880930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g39110 | RBH | 0.232391 | 0.060510 | 0.701446 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0572300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022320 | RBH | 0.312454 | 4.736875 | 10.437997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021950 | RBH | 0.0 | 5.896210 | 1.572053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022260 | RBH | 0.856090 | 15.402480 | 10.165671 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021650 | RBH | 0.226844 | 0.504624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021450 | RBH | 1.653241 | 6.249133 | 4.894418 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0372200 | RBH | 4.6975335 | 20.5052165 | 13.7453735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021440 | RBH | 0.180543 | 0.791827 | 0.256352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0359100 | RBH | 4.688699 | 9.532569 | 20.028484 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021400 | RBH | 0.039773 | 0.058637 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021310 | RBH | 0.000000 | 5.397695 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021570 | RBH | 2.949289 | 6.030419 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021370 | RBH | 0.286298 | 6.993289 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021700 | RBH | 0.105305 | 2.865607 | 2.612567 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021420 | RBH | 0.354513 | 0.000000 | 3.895487 |
