Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0015520 | OGI:01042370 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:13949644-13951678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agccgagactataatgcctctcatatcattttaaccaggaatagagtacttgctaccagtacaaaccatcgaaaaaacaacacttgcaaagtcagttaattcggcggtaagcgtgccaacctttaattaagctgtaacaggtgacaatatatttgtgcaagcttactatttgtcatctggcacttgctcttgaaccaTttttcttagagtttcatttgctcgtgaagtgagatatcagtatgctcggcagtacaaacagcatcggttgcagtacttgtctggatatggaggcagtactcatgcctggatggtacttgtcgacgttgttcagtgaaaggaaacacacgcagtacatcagtacgttgactgatatcgtcgagacacaacgagcaagttgaagggcagtaatcggaactgatgcgagtaagcgaatttgcgcggaaattcggcgcacccaacgaggaagttgcaaggcaatacttggaactgatgtgaataaggaaatttctgcagaaattcggagcagctgcagcagaagcagtgcatggtgatcagaggtaggcctgaagctatcttttggccattgcttcaagatccatgagctgaagtagcacagtccccctgacaagcctgagatgccccaaaaactactcctccaataaccctgcaggatcgtcatctcatcatatgtagctgcccatgcccacagcaaggaaaccgcgaagaggcaaatgattttgcacgcacgggcatcgtgggcatggttgaggtgaacggagaaccatatgagcagggcgacaagctccggcgtgcaggctagcgccatgctcttcgtcccaaaccattctccggccatggtgtgcaccgacactagaatgagggcgatgcatgtcctgtgcatcactggcaacacgcgtgatacgccaggatagatcccggctggcaccgtgcgggcgattagtgtcgccagagcaaccatagcggagctgatgaacaccaggaaatgagagaccaaaacacgatcttgctgccaggttcctcgggcaagcatcacgccgggtagctgcagccaaaacggtagcaccgctacgatcagcgtcagctgctcttcagatttacgcaagacgctgctagctttggaagcaccgggggaatcatgtcgaagttgcctcctgcaggtttcttctacccagaacttgcggcacagagcgccgatgaacacaatcatgatagctgggaacacggcgaggctgatataccttgtgttaatcaggagcaggaacacgtaagaattcagcactatgccggcagtggtgatgtgcaacgcaaccccggagccatattgctgtttgggttgaagtatccggaaacgcatgccatttccaatcacaagagtgatcatgccgagacagaaaacagctattggcatcgcggaccgtttagccgtttgctcgggctcgctgtgacttgttagaagaggaattatatagttgccgaccgctgatatcactagcgacaggaaaccatgcacgaacaatcttgtaattggcttgattcaagcagaaaaacaaacaaaagaaattcgtcagtaaaaatgacccctaagataaactgtatataaattcgcttgaatcacttgaggtcacagagcgtatatatgattatgacgaaagttgctcactgtcctaaaaactgctcctaggctcctagctgctactgaataaggaccagatctgagaacaaatgaggatctgaacaaggacctgaatttgccttgaatctattacctctttcatgtcctcgtcgctctcttcctctctggcttcagaagattgagtgacttcatcgctcaaTttttttgacgacgatatctcgggcacgctgagtgccttcattcctctctatagatctgctgtttttggtttttggttgtgtgatctttcgagcgcatattagtgcgttggttggggtgagggatgaaagaagaaaaacgaagagatgggaagcttcaagcttgaattgtcctcaccatgtc
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| CDS seq | atgaaggcactcagcgtgcccgagatatcgtcgtcaaaaaaAttgagcgatgaagtcactcaatcttctgaagccagagaggaagagagcgacgaggacatgaaagagccaattacaagattgttcgtgcatggtttcctgtcgctagtgatatcagcggtcggcaactatataattcctcttctaacaagtcacagcgagcccgagcaaacggctaaacggtccgcgatgccaatagctgttttctgtctcggcatgatcactcttgtgattggaaatggcatgcgtttccggatacttcaacccaaacagcaatatggctccggggttgcgttgcacatcaccactgccggcatagtgctgaattcttacgtgttcctgctcctgattaacacaaggtatatcagcctcgccgtgttcccagctatcatgattgtgttcatcggcgctctgtgccgcaagttctgggtagaagaaacctgcaggaggcaacttcgacatgattcccccggtgcttccaaagctagcagcgtcttgcgtaaatctgaagagcagctgacgctgatcgtagcggtgctaccgttttggctgcagctacccggcgtgatgcttgcccgaggaacctggcagcaagatcgtgttttggtctctcatttcctggtgttcatcagctccgctatggttgctctggcgacactaatcgcccgcacggtgccagccgggatctatcctggcgtatcacgcgtgttgccagtgatgcacaggacatgcatcgccctcattctagtgtcggtgcacaccatggccggagaatggtttgggacgaagagcatggcgctagcctgcacgccggagcttgtcgccctgctcatatggttctccgttcacctcaaccatgcccacgatgcccgtgcgtgcaaaatcatttgcctcttcgcggtttccttgctgtgggcatgggcagctacatatgatgagatgacgatcctgcagggttattggaggagtagtttttggggcatctcaggcttgtcagggggactgtgctacttcagctcatggatcttgaagcaatggccaaaagatagcttcaggcctacctctgatcaccatgcactgcttctgctgcagctgctccgaatttctgcagaaatttccttattcacatcagttccaagtattgccttgcaacttcctcgttgggtgcgccgaatttccgcgcaaattcgcttactcgcatcagttccgattactgcccttcaacttgctcgttgtgtctcgacgatatcagtcaacgtactgatgtactgcgtgtgtttcctttcactgaacaacgtcgacaagtaccatccaggcatgagtactgcctccatatccagacaagtactgcaaccgatgctgtttgtactgccgagcatactgatatctcacttcacgagcaaatga
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| Protein seq | MKALSVPEISSSKKLSDEVTQSSEAREEESDEDMKEPITRLFVHGFLSLVISAVGNYIIPLLTSHSEPEQTAKRSAMPIAVFCLGMITLVIGNGMRFRILQPKQQYGSGVALHITTAGIVLNSYVFLLLINTRYISLAVFPAIMIVFIGALCRKFWVEETCRRQLRHDSPGASKASSVLRKSEEQLTLIVAVLPFWLQLPGVMLARGTWQQDRVLVSHFLVFISSAMVALATLIARTVPAGIYPGVSRVLPVMHRTCIALILVSVHTMAGEWFGTKSMALACTPELVALLIWFSVHLNHAHDARACKIICLFAVSLLWAWAATYDEMTILQGYWRSSFWGISGLSGGLCYFSSWILKQWPKDSFRPTSDHHALLLLQLLRISAEISLFTSVPSIALQLPRWVRRISAQIRLLASVPITALQLARCVSTISVNVLMYCVCFLSLNNVDKYHPGMSTASISRQVLQPMLFVLPSILISHFTSK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0015520 | OsLiXu_01g0015520.01 | Chr01 | 13949644 | 13951678 | - | NAM | ||
| CDS seq | atgaaggcactcagcgtgcccgagatatcgtcgtcaaaaaaAttgagcgatgaagtcactcaatcttctgaagccagagaggaagagagcgacgaggacatgaaagagccaattacaagattgttcgtgcatggtttcctgtcgctagtgatatcagcggtcggcaactatataattcctcttctaacaagtcacagcgagcccgagcaaacggctaaacggtccgcgatgccaatagctgttttctgtctcggcatgatcactcttgtgattggaaatggcatgcgtttccggatacttcaacccaaacagcaatatggctccggggttgcgttgcacatcaccactgccggcatagtgctgaattcttacgtgttcctgctcctgattaacacaaggtatatcagcctcgccgtgttcccagctatcatgattgtgttcatcggcgctctgtgccgcaagttctgggtagaagaaacctgcaggaggcaacttcgacatgattcccccggtgcttccaaagctagcagcgtcttgcgtaaatctgaagagcagctgacgctgatcgtagcggtgctaccgttttggctgcagctacccggcgtgatgcttgcccgaggaacctggcagcaagatcgtgttttggtctctcatttcctggtgttcatcagctccgctatggttgctctggcgacactaatcgcccgcacggtgccagccgggatctatcctggcgtatcacgcgtgttgccagtgatgcacaggacatgcatcgccctcattctagtgtcggtgcacaccatggccggagaatggtttgggacgaagagcatggcgctagcctgcacgccggagcttgtcgccctgctcatatggttctccgttcacctcaaccatgcccacgatgcccgtgcgtgcaaaatcatttgcctcttcgcggtttccttgctgtgggcatgggcagctacatatgatgagatgacgatcctgcagggttattggaggagtagtttttggggcatctcaggcttgtcagggggactgtgctacttcagctcatggatcttgaagcaatggccaaaagatagcttcaggcctacctctgatcaccatgcactgcttctgctgcagctgctccgaatttctgcagaaatttccttattcacatcagttccaagtattgccttgcaacttcctcgttgggtgcgccgaatttccgcgcaaattcgcttactcgcatcagttccgattactgcccttcaacttgctcgttgtgtctcgacgatatcagtcaacgtactgatgtactgcgtgtgtttcctttcactgaacaacgtcgacaagtaccatccaggcatgagtactgcctccatatccagacaagtactgcaaccgatgctgtttgtactgccgagcatactgatatctcacttcacgagcaaatga
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| Protein seq | MKALSVPEISSSKKLSDEVTQSSEAREEESDEDMKEPITRLFVHGFLSLVISAVGNYIIPLLTSHSEPEQTAKRSAMPIAVFCLGMITLVIGNGMRFRILQPKQQYGSGVALHITTAGIVLNSYVFLLLINTRYISLAVFPAIMIVFIGALCRKFWVEETCRRQLRHDSPGASKASSVLRKSEEQLTLIVAVLPFWLQLPGVMLARGTWQQDRVLVSHFLVFISSAMVALATLIARTVPAGIYPGVSRVLPVMHRTCIALILVSVHTMAGEWFGTKSMALACTPELVALLIWFSVHLNHAHDARACKIICLFAVSLLWAWAATYDEMTILQGYWRSSFWGISGLSGGLCYFSSWILKQWPKDSFRPTSDHHALLLLQLLRISAEISLFTSVPSIALQLPRWVRRISAQIRLLASVPITALQLARCVSTISVNVLMYCVCFLSLNNVDKYHPGMSTASISRQVLQPMLFVLPSILISHFTSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.398543 | 0.351659 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0347200 | RBH | 0.118631 | 0.243319 | 3.853573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24490 | RBH | 0.078434 | 0.159999 | 0.947914 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0347200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016130 | RBH | 0.0 | 0.000000 | 1.824098 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015750 | RBH | 0.0 | 0.935276 | 0.280723 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015990 | RBH | 0.000000 | 2.164527 | 1.285627 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015520 | RBH | 0.751569 | 2.344264 | 13.515319 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0232700 | RBH | 1.0382285 | 14.3606115 | 0.493953 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015560 | RBH | 0.0 | 0.0 | 0.137168 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0230000 | RBH | 0.291434 | 6.717758 | 0.061282 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015470 | RBH | 0.0 | 0.067618 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015450 | RBH | 0.349804 | 11.532954 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015660 | RBH | 2.923727 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015350 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015330 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015790 | RBH | 0.117975 | 0.000000 | 0.436675 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015560 | RBH | 0.0 | 6.825439 | 2.013314 |
