Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0013960 | OGI:01035070 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:11790648-11802743 | ||||||||
| Gene Symbol | WAK4, OsWAK4, OsRLCK32, RLCK32 | ||||||||||
| DNA seq | ctcgactctcgcttcctcaatcacgcaagccgccacaagctaccaacctagcgtctagcggcgtggccggcgacggcgggccggcggcgatgcggcggcggcagcgagcagcatggcgcaggcagaggttgtgcacgggcaggcagatacatgcggtggcgcagcgccgtagaggcgcaccgggcgacgaggggcaagcagctagcagatctggccatcaggccatccatccatcaaagggcatcaggcatcgtcgcagtggggcaagtagcagcagctagcagagcaagcgtcaagccgctagcggtgagtcatcacttcatctctgtttatcaacagcagcagctagatgatgggatttacaagatttgagcttcatgattcatagttttgatttatccttaggtttgcagtggagaagaaaaaaaaacgttgttaaattatgcaagcaaatcaatttaagtagtacccattcaattccaagtgatgagagcgcaaatcaaccaaagaagcctcaagtacaatttgatcgtaatgaaatttttgctgatcccgcacaaagaatgcctactattttttctcctgacataacagatgaagtgaggatggcatatttatcgaatgctccaaatagagcacctgaccatatttttttttccgaagacattagatggtaaggtttcaaggtcatttcaacggaattcgaaaaattagtgtccaaaaggatcctgtgttttgtttctattgttttatgtttaagaaattagcacatccccgtaaattaactttagttcttcgacgttgagcctatcctctatttcaatcctggattcgccactggttccatccatctttaccaaagaagtgcataacagatgtctctaacagtttgcatccttccttcatcacatcgtgctcatcttctttaagcaacaataaccattgtcgagcccagtatgttcccctgaaaataacctgcaagtaagagttaaaattggagccattgaagaccacattatttctacaaatccacattgcccacaacaacgccgcaatccctataaagatttggtactttagtctagattataaaccctttagccaaatcctaaacatattagctaaagtgtttacaatatcgatgagctcgactaaactggcttttgcactccaatgaactctcAaaaatgtatgtagagtgacctttgacatagaatgaactacatgtggtggtcctaaatgacacaaagacaaaattacctaacaaaaacagaaaatgttggataaaaaggatggctcaaactaaaactttaggagtaataaaaaggtatcccagattataattcatgaatataaaaataaaacaattcaaactttaggctggcctaacaagccaaagccTtttttttttcattgtcgaactgactcccgtgtcgcttctctcaccgacctgggaggcgaaagccgactcccccacctaggccctgtttggtaacatgggctaaacattagtccccaccttttagccttgaattagccctcaaggatccaaacaggtgggctaattcttggctaaagtgaattagcctccttcaaaacattagcccttccaaGgggtgctaatggggctaattttgtgtggggaccatcaaaaagcagctctctctctctctcctctctccttctctttcctctctttttactctctctctccatcttttagccttgaattagcccatggatccaaacatgccaccctaggctaatgtttagcctaccaattcatgactaaacattagctctcaaaattagccctgggctaatcttccaaacaaggccctacttagcacatctcgcctgcctcgccactgtcagcaacgccaccccttgcggtggtgcccggcggcagcaggcctccctcctctctctccctctctcttcctttccccttcttccttccctcttttttttcccttcctctttttctctagatctgaggcgactcgggagacgtcggttctgagccttattctccttcccacgtccgacgctggcagcctcccaccgttctagggccagcggcggcggtcaaggtggtgagggggacggccggatctggccaccctaggtcaagatccgacgcctctccaacgcgagaggccggatcccttgttgtggcggcgaccagtggcgatggtgaaggcagcaagggggatggccagatcttgcccctctaggtctagatccggcgcatcctagtctgggtcgggcgaggctggtcccccgtgggcccgtggcggcgacaacgatggggtcgctcggtggatcttgggtagcctgtgtggccgtctgatggcgccgacggttcggctagacggtagagtaggttgtcaacggcgcctgtccgggctatgcaggtcgttgcggtgtgcatatggtggtatgcatagtgcaggtaccttcggcgtacaggtggaatttggtggcttccgttgtggacactatggttggatgggactccgaagtgaaagccttgcttggcttgccggtgttagcaacgatgacgctcttgggcgctattcaccttattgaaggtgttgctattggagccctcattcaactccacaccaagggatttctttgggtgaaaaccttaaatttatttgggtcgagagatgtcagtgtgttcttcttgaagacttcattttaggagttttttctttattggattgttgttcttaggttcaaaatatcaatgccaggttttgccatttttttcataaattaatcgtgtcgttgtaaggtttttgatccagttttctttataaactggatcaactctcttcttttatagtgaaatgtaggagctccacgctagtttcctcgcttttttttttaattttcaaattcaattttaagatattttcaacgtaatattttaatattgagttttaagtcgctaggaacatatatatatatatatatatatatatatatatatatatatatacatatacatatatatacatatacatatatacatatatatatatacatatatatatatacatatatatatatctatatatatatataatgtatatacatatatatatatatATAGaTatatatatatatatgtatatatatgtatatgtatatatatatatatgtatatatatgtatatgtatatatgtgtatatgtatatgtgtatatgtatatatgtgtatatgtatatatgtgtatatgtatatatgtgtatatgTAtatatatatatataaattaatttttattctctaataaactattttggcttattagaaaatatgggtaaccgataaggcttaaagAaaaaaagctttgggtaatcggataaactctaatgcctctcgaatgtttaacacctgtccgtaccttccaagttgtttcttcaatatcttcactagggatggcaattttgcccatgggtctgggtatccgcggatacccgacccaacgggcacgagcgtgggtgtgatttttacccgtgggcacgcccgcccgaaacccgtagacatcgtgggcaacagtcgggtttcattttttgcctgtgggtaacccatgcccgacccgatacatatgtattagctaatttcgacttatctcttaattcttatactcatttctcttggttcatttgtgatactaactaataataagttgtgatgtcattcaaattattgttgataactgataatttggtaaattattgattttatttctctttgttaaattatgtatctttcgagttactattcatgtgagatccattgggtatccgccgggtatacccgtgcccgtcgagcatgggtacgggcacagagttttgccctctaatcctagtgggtagggtttgggcgggcgacgacgggcatgggttcgggcatggttttgctctacccgtacccgacccgacccgttgccatccctaatcttcaccctcctcggctcctcatccccatgtaacgcttgatcccaaattcccaattcccctcttctcgcaacaatcccaccgccttcttctccactcttccgccgtcttactcaactgtatcctttaccatcacctccggcgaccctctgccgcctccaaggccgacgcggcagagggtatggaaggcggctcttactgcgcttctctttgcaaggaaaagaatgtggacgagtgccagttagttaagtcagagtgagcatgcagatgcagtggatgtttcctcagctgtggtggcgttggaggcgggttcgccggaacgtggagcggtggagagatgcgcggcgcgtgcgcgcgcggtggccatactcttcgccggagtcgaagaagggctggccaatgcacgacctatgatgttatcccatggtgagaaattgttatattggtgatgtatagcagttccagagaagggagaaaaaggctcactgttatattggtgctgtatagcaattccagtcgaaaatcgtcagaatctgatttttttttttagagaacaacttaagtactatcatgtgaatcaaataatgcattgttaacattcttcagtattctacacaggacaacctggcatgttatccatgtcctggaattcagtttggcatttcaatttccctggcatgttatgcattgttaacattcttcagtgaatcaaataaaatgattcgttccaactcacaaactaacatgactttgaccttgtttatgcaggcaggcaaccacctgttgctttccaattcttcagctggcttacgcatggattgccaagagaataatctcaaaagtttccttcagactaatgggcatgtggttcttcaaagagtggacaacaactatagcctgagatatttcacgaaaaatgaggtatggcacatcaccaatgggtatagcatcatgctgggaaagggagcattcggtgaggtctacaaaggaattctagacgacggattccctgttgctgttaagcggtacatacatgggaacctgaaagaggaatttgctaaggaggtgatagtgcactctcaaataaatcacaagaatgttgttagactcttgggctgctgcacggaggaaaatgctctaatgattgttatggagtttatctgtaatgggaacctcgacaatgtcctccactgcagcaacaccaagggatgtgttcctttccccttgtacaaacgtttagacattgctattgaggttgctgaagcgctatggtgcatgcattcaatgtatagtcctgttcttcatggtgatgtgaaacctgctaatatactgttagatgaaaaccactcaccaaagatatctgattttggaatagcaagattgctttgtgctaatggggctcaacataccaaaaatatcattggttctataggttatgttgatcctgcattctgcgagaatggaattctaaccccaaagagtgatgtttatagctttggagtggttttgctggagataatcaccagaaagaaagcagtggatgggaccatcacccttgctcaaagtttcactgatgccattgaaaaagggaagaaagtgatgaatttgtttgatgaggaaatcaacgataaacaaaacatgaacttccttgaagatattgggaagttggcagttaaatgcttgaggagggatgttaaagtgcgccctgaaatggttgaagtagcAaccagtctaagaatgattaggaaagatctggagggagaacaagggaatctgactcagcaacatacaagtacaccaaacaactcaactccctcaaagaatgaaggctcagcaggacaccaatttggcaatctaaatatcttcaaacaagaggaaattaagcatatgacaagaaactacagcatgacctttagggaagaattccatgaacgtctatacaatggagttcttggcatggttcatgcagttatagtaaaacaagtgagtacatcttcaaaaaccgaccgagaagtgtttctgaagactatgggcatactatgccagaagtatcacaaaaatgtcgctaatgttgctggctttcatttaggggaatacatttcagagtgcgtgtatgaatcttgctgtgaattatcccaggtaaataatggccatatttccttctctaaccgaaacctttatgagatcatctgctccacggaaaaacttcctcttcatgtacgtttgtcaatagctgtccagtgtttagagggcttggttcatatccattcatttttagctgaaaatcctgaatcgcgtggcacaagcctgttcggaaattttaggtcagccaatatttttctagacaagaacttcatgccaaaagttttcaatgccaacttatcaacatttctcgggctttgcgccgtgcaacaatgtactgcctctgttgattgtattcatgaccaaagatcacaaaaatattatttagacccaaaggatgtttctgatcatctgttcaaccccaagtctgatgtttatagctttggagttgttcttttggaactcattacttggaagacagcgaaatacaagtctggtggacaggctcatatgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaaggtatacatcttgcaccagtaagttgcagaaaaaacacatggaatcctgtgcaatcaaaattttaagactttaaccactttgtattaacaaaaagtactttgaaaaattgtaccccattctcaagtacatgatctagaatatctgcagtccaatctcaaaattttaaatcatgaattgcaacaatattaggatttgataagagcaaataatatcagtagattggtcacAaaaaatactttcatacaactacttaataattttataaatacgagtttaaaaaataatgatgaaacatgtgcattggagaccgtgtcaatgttcaaaacgtcaagtagaaaagtgtgaaggtaaatactccctttgcacgatttaactttgcagtattcgaaactgaaacttgaccatatgtttctcatacatttctactgctaatagctacaaaaaccttgttcatataaaagaactttgaaatcccaaatataattgtaacattttataccgtgaagtatatatgtagcctataaaggtAaaaaaaatacaaattttgaagtacatgcatgtggcttataaaattgagtagaggaagtacctctataatacatatatttttattatttttactagtaaattgttataaatttaagatggtaaatgattgtgatgacagaagaaaatattgacatttagtgacagctgttattcatccataattcattgttcaaaaatattgacattggccggagaggccgaggcccaaggcaacctaataataatacccttgcacacagtacggtagcttggttggttagagtccgttggattagattgggtcctccctccatctatataggatgaaatgtatcattagttggattaaatgatgaattagaatcagtctcccccaacctaagtcccactctcatccggtcatcccttgcagccgccggccactgtcacctggctatcttcccgatggtgtttatccccttatgaaccctagcccataacaacaacagctttaaggtttaggttttctcataccaaatttttcaggtataatgatactcattgtaaatcaaatagtgacagataaattttcaggtataataatactcctgagcagcagtcaacttagcctgttaaatcttgttctgtcttttcaatgcagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtcctggggcgtgcctttcccttttaccttttcggctaatgtgcttcattcattagtactagaagcaaggatttctttctgaattccatgtgtcttgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtaaggaatacataaagacagtaggtcaatagctgaaacaatatgatatttcgttgatataattgaactttttgatgtgtggaatattttttaatctaccatacctggcgagtacagttgatttttttgagtttatgattatttgcaggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagtatgcaacacagtgtttccatgctttcagattgttacactagagccttggcttggaaatggcatgcattacctcctactgatatgctctttccttcgttggttcttgttaggtgcaggttgagaggacagtatagtgtaaagagcgatgtctacacctttGgggttgtattgttggagcttttaactggtcgcaaagtatttgatcatacacttccgcgtggccagatgagccttgtaaaatgggtaaacatgcatgcttgcattcgctgatctaatttcttcataggatcaagaagctaattaacctgttgataatgagatgcaggctacaccaaggcttagtaaagacaaggtgaaacaatgcgtagatccaaagcttggacgagcattcccactcaaggctgttgccagggtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttgagatcatgttttgcctacattgaatctgaacttcgtcagcataaattatctgtagggtcaaacaatctgtttctgttcttcactttgaaaaaacagatggtttcttttgcacatgtaactcatggttagctcccatgtaaagttagatatgaggataggaagcgcaggttagttgagggccttgttaatccacataaaaccctcagcagtctatcacacgaacaagtcccattatggacataatatatttatattcaaactttcAaaattttgagtgtcatacatttttaaataattatatattactatatacatgaaaataacagtacaaagttgtctcaagaaatactttctttaattaattttgcaatttattgggttctataaatatactacaataaattttaaaaggaccattaaccaaaacaagtttgcgtgaccagaggtagattaccaatcactctttcttttaatttttctttgttgaattatactcaataaagttcaagtaaaatgtacaatttcttatggatgtacttccgaatctaataaagcaccataagcattaagcaagttgtatcctataggaaatacctcgcaagggccattagagacagttcatgaccaaacgatctggtgaatcatctctgtatatgtatctatgatagtagggtccattaaggttatttaatcgtgcaaaagtatctaagagagattattttctataataacctgtatatggagttgagaggtatcttttaggcaaacaagatatttgagggggtaaaatgggcttacccttccttttttttaattgaatgtaccccccccccccccCTCCCTCCTATTTATCCTAACTTCTCGAATATCAAACAAATCAAATAGCAACAAAAATTCTAAAAAAATATGCTGATATTGACACAATATAGTCACTATCATAAaaaaaaaatcaattccaaacgcaacctatagattttaaaaaaggaaagagaaataacaaacttacggtaggtagtgcgagctctacacctctactcatagtcaaatttgtttttttttctcaacttgtacaacttaattttaaattgatgtttgtgaagtgatataacacaatgttctactctatcaaaactttaaagaattttccttaactagttaagtggtatgcaagtgatgaggatgtatcctgttagagttaaagggatgaaatgactttcccaaagtgctactctatacaacgggacaattgcttatttgatcccgttttgaaccctaactaccaatttaaccctactttttggattttgcttatttgaccctccttttcaaaaacgaagcttcctgttctgttaagggcatctaacggtgttaactgaagtacaaaatgtctcttttgtccttactcatttaaccctattacatgtgggacccacccgtcagttctctctcctctcctctcttctctctgctcttctcttctcttctccacggatcggcgagacggtgagccaacaccaatggggcggcgacttgcggcggtggcgctgatggggcggcggcggcggcgctctgagggggcggagggagggagcgacggtggtggcagacggaggggcgagttgcggcggcggcgcatggagggagcgagcggccgtgccggctcgtggagggagggagggagcggcgacggcggcggctgagggacgcggaatgagggatgcggcggcgccagcgtaggcgcgcggaaggagggaggaggcggcggcggcgatggcggcggccctggcgcaggcgcagaaggaagaaggaggcggtggcggcggtgccggatccgctgaccagggctcgagctccactacgcggactcgtcaccatcactcctcgtcatcgtcgtcgtcgtcactagggccaacgccggctcaccgtctcgccatccgccgcctctctgtggtggatccgtggaggagaggagaagaactcgtcgccaccactcctcgtcgtcgtcaccagggccggcgccggcctccaccgcgccatcagcgcagccgctgctagtcgccgccacaagGAgagagagagagagaaatgtggatagggttgggtggatggatggatggatggatagggtttcctaagggtattctgggaattatgaatattagttgtatttttttttaattttaaatcaaaacttaacagaataatggaaacagggtcagacgggagttttgtttttaaaaatgatggtcaaataagcaaactctaaaaaatagggtcaaattggtagttatgatttaaaatagggtcaaataagcaattgccaaaagctactctacacacattaacgtttggggtgtgttttattgcttgttcggtttggcaaatagatggctgctgtggctgcgctgtgcatacaattcgaggcggaatttcggccctccatgagtatcgtcgtcagggctctgagcatgttagagagcagcacgtcaagcaagcaaccgagcatcggtgaagcagctggagcgtgaagctcgccgttccgttggatatagggtgattttgttgcatgatattgtgcgttcaaaggaaggaggtttcatgtgggtaactatttgattgttccatattcacctaactaaacttgaacttcactatagtttgtctcagattgtacatatgatttaagtattacgaattcgtgatgttcggtctc
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| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagttgagaggacagtatagtgtaaagagcgatgtctacacctttGgggttgtattgttggagcttttaactggtcgcaaagtatttgatcatacacttccgcgtggccagatgagccttgtaaaatgggctacaccaaggcttagtaaagacaaggtgaaacaatgcgtagatccaaagcttggacgagcattcccactcaaggctgttgccagggtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttga
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIGDLGVSKQLHVEDYDYSYTRVVPQIFRYEAPELRGQYSVKSDVYTFGVVLLELLTGRKVFDHTLPRGQMSLVKWATPRLSKDKVKQCVDPKLGRAFPLKAVARVIIFLSLDVTVCVSQFFLHHNCIRISGSFI |
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| Function | Pto-interacting protein 1 [UniProtKB/Swiss-Prot:Q41328] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.05 | Chr01 | 11790798 | 11800394 | + | NAM | ||
| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagtatgcaacacagtgtttccatgctttcagattgttacactag
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIGDLGVSKQLHVEDYDYSYTRVVPQIFRYEAPEYATQCFHAFRLLH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.06 | Chr01 | 11796201 | 11800394 | + | NAM | ||
| CDS seq | atgaagcaccagagtatgcaacacagtgtttccatgctttcagattgttacactagagccttggcttggaaatggcatgcattacctcctactgatatgctctttccttcgttggttcttgttaggtgcaggttgagaggacagtatagtgtaaagagcgatgtctacacctttGgggttgtattgttggagcttttaactggtcgcaaagtatttgatcatacacttccgcgtggccagatgagccttgtaaaatgggctacaccaaggcttagtaaagacaaggtgaaacaatgcgtagatccaaagcttggacgagcattcccactcaaggctgttgccagggtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttga
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| Protein seq | MKHQSMQHSVSMLSDCYTRALAWKWHALPPTDMLFPSLVLVRCRLRGQYSVKSDVYTFGVVLLELLTGRKVFDHTLPRGQMSLVKWATPRLSKDKVKQCVDPKLGRAFPLKAVARVIIFLSLDVTVCVSQFFLHHNCIRISGSFI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.03 | Chr01 | 11790648 | 11800394 | + | NAM | ||
| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagtgcaggttgagaggacagtatagtgtaaagagcgatgtctacacctttGgggttgtattgttggagcttttaactggtcgcaaagtatttgatcatacacttccgcgtggccagatgagccttgtaaaatgggtaaacatgcatgcttgcattcgctga
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIGDLGVSKQLHVEDYDYSYTRVVPQIFRYEAPECRLRGQYSVKSDVYTFGVVLLELLTGRKVFDHTLPRGQMSLVKWVNMHACIR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.02 | Chr01 | 11790648 | 11800394 | + | NAM | ||
| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagttgagaggacagtatagtgtaaagagcgatgtctacacctttGgggttgtattgttggagcttttaactggtcgcaaagtatttgatcatacacttccgcgtggccagatgagccttgtaaaatgggctacaccaaggcttagtaaagacaaggtgaaacaatgcgtagatccaaagcttggacgagcattcccactcaaggctgttgccagggtaataatattcctaagcctggatgttactgtctgtgtttcacaattttttttacatcataattgcataagaatttcgggaagtttcatttga
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIGDLGVSKQLHVEDYDYSYTRVVPQIFRYEAPELRGQYSVKSDVYTFGVVLLELLTGRKVFDHTLPRGQMSLVKWATPRLSKDKVKQCVDPKLGRAFPLKAVARVIIFLSLDVTVCVSQFFLHHNCIRISGSFI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.04 | Chr01 | 11790798 | 11800394 | + | NAM | ||
| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggttga
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013960 | OsLiXu_01g0013960.01 | Chr01 | 11790648 | 11802743 | + | NAM | ||
| CDS seq | atgcttacgacagacttccttgatacttacagaatagaccatagtgcaacagacttttttgtcaagaaggtttatgacgaggaaggcaagtgtttccttcatgaagccattgctattggagttgagtgcctaaaacttgattttcaaatgcgaccagaaatgagtgatgttctttcccgtctccggatcatctctgcagctcagagtatcagaagcaagctcatgggtccacaagcaaaagattgtggcgataatggacctagccaatacatagcccctacccctgtcaacaatgatgtcaaaattccttctccaccaacttctgcgtcgaccatttcactggacatactgaagaaaataactaggaacttcagtaacaattccctaataggagaaggctcacacgctaaagttttctttggagtgcttaaagatggaaaaaattctgcagtaaagaagctcaatcctaatgaagaaactatagtgcaggtttcgaccatttcaaaaatgttgaagcatgacaatgttgtccaaattcatgagtattttattgaaggggaaaatcgtgttcttgtttatgagtatgcaccaaagggctccttgcatgatattcttcatggtagagaaggtgtcacaggagcccaagcaagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgagttcctccacgagaaggccgtgcctcctgtcatccacaccaacatcaagtccagcaacatacttctctttggcaatgatgttgcgaaaataggtgatctcggtgtctcgaagcagcttcatgttgaagattatgattacagttatacacgagtagttccacagatttttcgctatgaagcaccagagtatgcaacacagtgtttccatgctttcagattgttacactag
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| Protein seq | MLTTDFLDTYRIDHSATDFFVKKVYDEEGKCFLHEAIAIGVECLKLDFQMRPEMSDVLSRLRIISAAQSIRSKLMGPQAKDCGDNGPSQYIAPTPVNNDVKIPSPPTSASTISLDILKKITRNFSNNSLIGEGSHAKVFFGVLKDGKNSAVKKLNPNEETIVQVSTISKMLKHDNVVQIHEYFIEGENRVLVYEYAPKGSLHDILHGREGVTGAQARPPLSWVQRVKIAITAAKGLEFLHEKAVPPVIHTNIKSSNILLFGNDVAKIGDLGVSKQLHVEDYDYSYTRVVPQIFRYEAPEYATQCFHAFRLLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 11799524 | 11799643 | + | OsLiXu_01g0013960.03 | OsLiXu_01g0013960.03,OsLiXu_01g0013960.02 | All |
| RI | Chr01 | 11799248 | 11799769 | + | OsLiXu_01g0013960.01,OsLiXu_01g0013960.05,OsLiXu_01g0013960.06 | OsLiXu_01g0013960.02,OsLiXu_01g0013960.01,OsLiXu_01g0013960.06,OsLiXu_01g0013960.05 | All |
| RI | Chr01 | 11799643 | 11800394 | + | OsLiXu_01g0013960.04 | OsLiXu_01g0013960.04,OsLiXu_01g0013960.02 | All |
| A5 | Chr01 | 11799430 | 11799643 | + | OsLiXu_01g0013960.02 | OsLiXu_01g0013960.02,OsLiXu_01g0013960.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.320281 | 0.928715 | 0.796509 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0310800 | RBH | 1.288997 | 0.787551 | 3.270381 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g20900 | RBH | 0.867193 | 0.526963 | 0.898246 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0310800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014320 | RBH | 0.686726 | 9.434395 | 3.758994 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014080 | RBH | 0.206437 | 1.868589 | 1.780124 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014340 | RBH | 1.686050 | 5.260910 | 11.330352 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013800 | RBH | 0.156486 | 0.052022 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013890 | RBH | 4.684309 | 10.560448 | 12.665757 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0193400 | RBH | 2.6125025 | 7.9885215 | 8.4513805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013780 | RBH | 0.157829 | 0.243768 | 0.608253 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0202000 | SBH | 0.813879 | 0.3662575 | 8.333996 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013830 | RBH | 0.269230 | 0.354374 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013870 | RBH | 1.362183 | 18.147585 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013850 | RBH | 7.148637 | 15.769665 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013650 | RBH | 0.179525 | 3.306129 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013970 | RBH | 0.447415 | 2.986259 | 1.967052 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013750 | RBH | 1.608807 | 17.483690 | 4.242038 |
