Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0013720 | OGI:01026880 | 7/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:11432447-11433461 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggagggcgccgtgctgcgagaaggtggggttgaggagggggaggtggacgaaggaggaggacgagaagctggcgaggtacatacgggagaacggggaaggcgcgtggaggtcgatgcccaagaatgccggcctgctgcgctgcggcaagagctgcaggcttcggtggatcaactacctccgggccgacctcaagagggggaacatctcgccccaggaggaggacatcatcctcaacctccacgccacactcggcaacaggtagtaccttcttactttgcccctccattacttcaatctgcatggttcatatatctatacacacgatcgctttggcatttctccgttttgttttgatacgaatcacacgaagttgagatttgagaaagagctaggaaacgaagcccctgaatcttagccgccttctagtagttttacaagctcgtctgcctctgagcattgttcgtctttgttttggaaaaaaaagattgtccccacagcttcgaatggcttcctcttcctatcagaaattagaatcgggagctcgaagcacatgttaccacgcctgctttcgcaagtctgatgatctagagtctctttcgctctgaaatgatgcagaaacgccacatacgagagcctgcgatacctggttctcgtgcttcctgcacttttctgcttttttttttgccggttaaaaagtcataatcatatagtaacatactcctttttttttgccggttaaaaatacagaagacacgcagataggattatttactagtactacaaaaatggagtgattgcatttacgtttatacaagaaatgccgattgatcgattccctgcgactctgctcttgaagtacccaagggcaaaagcctggatcttccctttgtcttagagcgaattactcccattcttttttttttttaccttcccctgccctttaactacagttcctccatgaccaaaggccaaagaacagaagaaggccagcctccatggctccatcctaa
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| CDS seq | atggggagggcgccgtgctgcgagaaggtggggttgaggagggggaggtggacgaaggaggaggacgagaagctggcgaggtacatacgggagaacggggaaggcgcgtggagaaacgccacatacgagagcctgcgatacctgttcctccatgaccaaaggccaaagaacagaagaaggccagcctccatggctccatcctaa |
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| Protein seq | MGRAPCCEKVGLRRGRWTKEEDEKLARYIRENGEGAWRNATYESLRYLFLHDQRPKNRRRPASMAPS |
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| Function | Transcription factor MYB111 [UniProtKB/Swiss-Prot:Q9FJ07] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013720 | OsLiXu_01g0013720.01 | Chr01 | 11432447 | 11433461 | + | NAM | ||
| CDS seq | atggggagggcgccgtgctgcgagaaggtggggttgaggagggggaggtggacgaaggaggaggacgagaagctggcgaggtacatacgggagaacggggaaggcgcgtggagaaacgccacatacgagagcctgcgatacctgttcctccatgaccaaaggccaaagaacagaagaaggccagcctccatggctccatcctaa
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| Protein seq | MGRAPCCEKVGLRRGRWTKEEDEKLARYIRENGEGAWRNATYESLRYLFLHDQRPKNRRRPASMAPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.609087 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0305900 | SBH | 0.000000 | 0.729340 | 0.920149 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19970 | SBH | 0.000000 | 0.490542 | 0.236864 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0305900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030610 | SBH | 0.0 | 0.0 | 0.516252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029430 | SBH | 0.0 | 0.0 | 0.595055 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030250 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013640 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0189400 | SBH | 3.512617 | 0.0560035 | 4.0204585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012520 | SBH | 0.0 | 3.657383 | 0.721948 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0188000 | SBH | 6.309564 | 0.021088 | 3.8528735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040960 | SBH | 0.0 | 10.936728 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014490 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013420 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013720 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013510 | RBH | 0.000000 | 0.0 | 0.000000 |
