Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0013520 | OGI:01033640 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:11160776-11165414 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cggtcggggagtaggtctgcaggagccaggaggggctcacatgtcttgctgtccgcatccctcaagcagttgctgcagttgcaggtacttttggcaccttccacaaccttgtcttcttcgaaccacttcaagaacttgcaggtctcctaatcttgcttcccttgtttcttgggaagtttggtcatcttttcagcccatttcaaagcggaggtcgtgtcccctttccccaagtaatgctcccgaaacagctcacatgtttcgaaatcgaaatcaccacctctttccttgaccttctcccacaacaattcagcttcattggtcatgccatttcttagatgagctcgggtcaacatatttgtcagcttcgggtcatagctttcataacgatattcccactccttataaatctccttcatccgatcggtgtcaccgagtttatagagacattgaagcatgaggaggtagctgaagttagtcctgttataagaaaaagtcatttttatgtctttccacactctgttgacccctctcaagctgcctattgatgcaaattgcctcataaggaaataaaaagggtgcctgccatgatcaaaaccgagaaattcctgagctctcataaaagccaattctgcctcttcaaccataccagcattcatatagatggaaccgagtgttctaaatatagaccattgtttaggcacatctaatagtgacatgttgtaaaaagtctctttgacagcatctatcttgttgagtgctgcatgactacgcatcagaatgcagcatgtgagctcatccggttgaacattcctctctttcatctcatcaaacaggttagccaccttgctatgttggcctagctccaggtaaaggcccatcaggttattcatgagcttaatactggatgggatgccaagttcgtccatcctgcgatagatatttgtagctttctcttccattttagcagagcaataacagttcaaaagtgcaccataagttcgatggttctggtctcgagtaaaagaagggatgccagaaaagtattcctctgcagcctcaatgccatacacactgtaaaggagttccaaatgcaatgcatatcgagcatatgtcatgctcataccctttgtattaaccatccaatccatcaactgccaaagaaaccaagaaaaaatattacataagcacaataatcataatctaaaccccaattgcagtacatacggattgctctgaaacaagatatgttgagaagttcagtactagtattaatcttttgtgatcttgaggataactgagcatatagttgcaacaacatgctattatattggaaaatttccattttacgcacctgaacttccatatgggaaaaattccattttacgcacctgaacttccacagaagtctaaatcgcctctgaacttctaaaccggagattattcatccctcaactttccaagtcgtttgctttacacccctcaatctaatccatgaaggtttttagcttgcgtggtagtctagtttgcgaattattttggtaggcttcacaagttaacctctgtcttcacgaactggccatcgtatgcctcaccggttgccacactcgtcctaacaagctatcccctcctggcatgttgcttgcctcgctcatcggccacaccctctcctctcctggcccgtcgtgcacctaattcaccctcatccccaagttcgccggccaatgccttcatccccgagctctctgaccacattttcctctccctgctctgcctcacttgctggcagtaggtcaggaaagtggtctcctttctgacctaccgcccatctggcttgagcattaggcttgggacaggtgttttatttcaatctaatcatccaattcgcaatacacactcatggattgaattacattgcgtggttgattcatggatgcattctcgtcaaccaactaacttttggtacatatcattccggaagaaacatgctgtattaatattatctctgctgtctcaaggtgcattttacttcttgtcgtttgcgctaactgtttggagtgagcaagcgcatatgttcctgccgtacagcggcgggcatggaaaggttgcaaggacatgtagcaggagaagaagtgagtgaggaagaggtaatgtgttttggccatttcaaattcagcatttcggtaatacttcctccgtcccaaattataaggactatattttttttacacggtcaccaatgacatactttgaccattaatttatcacatgttatgtttccaacagataataaattagcatcacatgaaagaaatatagtgatataacatggaaaatacttaacatatactactatatggttagtatgattattagtcaaaagctatcaagtttgatttttctttaaaaaaaatggcgccctataatttgggacggaggggagctttgtggcttggaatagaccccgcatcgctctcgcgcgggcggctcggggggcgaaaaccctagccgcctgtgcctactccccctctcccccgcctcgccaccgccggagctcgtcggcggcaaagctggcagcgagcagggaaggcggcggcgaggtccttcttcctcttggcggctcaatcccggcgcgacgtggacggggcaacaccgatgaggtaccccaccgctgggagaagtggaggcggcggggcggtgtggggtggcggcggatccggcacccccatggccggatctggcgcggcggcccggcggcggtgcgcggctgggggcagcggcggcggcgcggctttgccggctgggagtagccggcggcgtggcaggcccgttacggctcggctgcctgggtgcggcccggcagctgggagcggcacctggcaaggaggcggcggctccggcggcgccccgcccggatccggcgtccccgtggccggatccgactctcccggatggccaaggtctttatggccggcgtcgccggcgacgggaggacggcgcctgcacgacgggacgatgccgacgtcgaggtcgatgcgtgcggcgccgtgtaacgggccgacgcggcagtggctggcgccggcgatgcttgctgccgcctcgtggatgaccgccggtgggggctgctgccagaaggatggctacgttgtgggggacccgactgggacgccggcttgcatggcggcggcggggttgttgcgcgtcgcccgtgtggcgacgctgcaggtgttggccggtggagttgccgccggatctggggtcgagctcggattcagccgcacagcactgccatcacgaccggcgatgacgaggggacgccatgtgggtgccttctcatctccttggagctcctccccttcttgaccgtttggttgtggggagctcctttgcgagacgatgaaggcggtggcaaggttgccccaggttgttatcgatagtgcactctctttggaggtgatggcatgggaggaaggctagctggtcgccgaagtgcagcggtggtttggtcgtgctcgttccaacgtgtagctgtgggggtcgcactggcagtaggtcaggtcgcttggagtccagccgacggaggggcgtcattgctgtagaggccacgtgttgacattgcctgggagtcggtgaggtagcggcaagaggggtattggcaggtgctagatgaaagccggcccaattcttgggcggcaacggcgacgtctttggacgttgcaaccctcttgagggcgttgttgaggtgcctccctccccctcttcaaggatcctcgaggtgaaaacctcatcctttcggaatggacgatggcggcgttttgaatgtcgtgaccttcttgaaggcatcattttggaggtggccgtgtgttcctctcggtgtggtggtgtgtaggcacgtggcggggtttgttttctcttgtccggttcccctgtcccctactgcttttgcctttggttgtaaataacttttttactcctcttaatgcaaaaatacgcttctagcgtattctcgaaaaatttgggacggagggagtaaaaagaagtagcgaaatacattgttagggacacattttgactattttcatgaaaacatgggcaaatacaatactcagcgaatacgcggacaaatcctaaacatttgaagggttcaggtcaattttctgttgatcgattcgattcgatttgatttgcactaataattacctgtgcagatagaggcgcaaacaacaacagtaagccaagcaaaagcagaaggcgcacacagccagcctgagccaaagccgtacgtacgtgtttcgatggcaaaggaggcgatgcacgcgtattccgttcatacctcgagggcgtgggcgtcgcgcttgaccttgtggagatccctggcgcacttggcgagatccgccgcggcgatcgcctcctcccgcccttcgcgcacccactcgtccagcacccgcgacacgctcccttcccccgccgcgtccccgagctccagcagccgccgacccagcggccgcttgtccttcttccccttcgccctcgcggcgtggggagccaccgcctccgcggcctccgcgccggtggtgaggaagcggcggatgacgaggcgagctgcggccgagaggtcgggcgtgggcggtgccatgggttt
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| CDS seq | atggcaccgcccacgcccgacctctcggccgcagctcgcctcgtcatccgccgcttcctcaccaccggcgcggaggccgcggaggcggtggctccccacgccgcgagggcgaaggggaagaaggacaagcggccgctgggtcggcggctgctggagctcggggacgcggcgggggaagggagcgtgtcgcgggtgctggacgagtgggtgcgcgaagggcgggaggaggcgatcgccgcggcggatctcgccaagtgcgccagggatctccacaaggtcaagcgcgacgcccacgccctcgagttgatggattggatggttaatacaaagggtatgagcatgacatatgctcgatatgcattgcatttggaactcctttacagtgtgtatggcattgaggctgcagaggaatacttttctggcatcccttcttttactcgagaccagaaccatcgaacttatggtgcacttttgaactgttattgctctgctaaaatggaagagaaagctacaaatatctatcgcaggatggacgaacttggcatcccatccagtattaagctcatgaataacctgatgggcctttacctggagctaggccaacatagcaaggtggctaacctgtttgatgagatgaaagagaggaatgttcaaccggatgagctcacatgctgcattctgatgcgtagtcatgcagcactcaacaagatagatgctgtcaaagagactttttacaacatgtcactattagatgtgcctaaacaatggtctatatttagaacactcggttccatctatatgaatgctggtatggttgaagaggcagaattggcttttatgagagctcaggaatttctcggttttgatcatggcaggcaccctttttatttccttatgaggcaatttgcatcaataggcagcttgagaggggtcaacagagtgtggaaagacataaaaatgactttttcttataacaggactaacttcagctacctcctcatgcttcaatgtctctataaactcggtgacaccgatcggatgaaggagatttataaggagtgggaatatcgttatgaaagctatgacccgaagctgacaaatatgttgacccgagctcatctaagaaatggcatgaccaatgaagctgaattgttgtgggagaaggtcaaggaaagaggtggtgatttcgatttcgaaacatgtgagctgtttcgggagcattacttggggaaaggggacacgacctccgctttgaaatgggctgaaaagatgaccaaacttcccaagaaacaagggaagcaagattag
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| Protein seq | MAPPTPDLSAAARLVIRRFLTTGAEAAEAVAPHAARAKGKKDKRPLGRRLLELGDAAGEGSVSRVLDEWVREGREEAIAAADLAKCARDLHKVKRDAHALELMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGALLNCYCSAKMEEKATNIYRRMDELGIPSSIKLMNNLMGLYLELGQHSKVANLFDEMKERNVQPDELTCCILMRSHAALNKIDAVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAELAFMRAQEFLGFDHGRHPFYFLMRQFASIGSLRGVNRVWKDIKMTFSYNRTNFSYLLMLQCLYKLGDTDRMKEIYKEWEYRYESYDPKLTNMLTRAHLRNGMTNEAELLWEKVKERGGDFDFETCELFREHYLGKGDTTSALKWAEKMTKLPKKQGKQD |
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| Function | Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [UniProtKB/Swiss-Prot:Q9FZ24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013520 | OsLiXu_01g0013520.01 | Chr01 | 11160776 | 11165414 | - | NAM | ||
| CDS seq | atggcaccgcccacgcccgacctctcggccgcagctcgcctcgtcatccgccgcttcctcaccaccggcgcggaggccgcggaggcggtggctccccacgccgcgagggcgaaggggaagaaggacaagcggccgctgggtcggcggctgctggagctcggggacgcggcgggggaagggagcgtgtcgcgggtgctggacgagtgggtgcgcgaagggcgggaggaggcgatcgccgcggcggatctcgccaagtgcgccagggatctccacaaggtcaagcgcgacgcccacgccctcgagttgatggattggatggttaatacaaagggtatgagcatgacatatgctcgatatgcattgcatttggaactcctttacagtgtgtatggcattgaggctgcagaggaatacttttctggcatcccttcttttactcgagaccagaaccatcgaacttatggtgcacttttgaactgttattgctctgctaaaatggaagagaaagctacaaatatctatcgcaggatggacgaacttggcatcccatccagtattaagctcatgaataacctgatgggcctttacctggagctaggccaacatagcaaggtggctaacctgtttgatgagatgaaagagaggaatgttcaaccggatgagctcacatgctgcattctgatgcgtagtcatgcagcactcaacaagatagatgctgtcaaagagactttttacaacatgtcactattagatgtgcctaaacaatggtctatatttagaacactcggttccatctatatgaatgctggtatggttgaagaggcagaattggcttttatgagagctcaggaatttctcggttttgatcatggcaggcaccctttttatttccttatgaggcaatttgcatcaataggcagcttgagaggggtcaacagagtgtggaaagacataaaaatgactttttcttataacaggactaacttcagctacctcctcatgcttcaatgtctctataaactcggtgacaccgatcggatgaaggagatttataaggagtgggaatatcgttatgaaagctatgacccgaagctgacaaatatgttgacccgagctcatctaagaaatggcatgaccaatgaagctgaattgttgtgggagaaggtcaaggaaagaggtggtgatttcgatttcgaaacatgtgagctgtttcgggagcattacttggggaaaggggacacgacctccgctttgaaatgggctgaaaagatgaccaaacttcccaagaaacaagggaagcaagattag
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| Protein seq | MAPPTPDLSAAARLVIRRFLTTGAEAAEAVAPHAARAKGKKDKRPLGRRLLELGDAAGEGSVSRVLDEWVREGREEAIAAADLAKCARDLHKVKRDAHALELMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGALLNCYCSAKMEEKATNIYRRMDELGIPSSIKLMNNLMGLYLELGQHSKVANLFDEMKERNVQPDELTCCILMRSHAALNKIDAVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAELAFMRAQEFLGFDHGRHPFYFLMRQFASIGSLRGVNRVWKDIKMTFSYNRTNFSYLLMLQCLYKLGDTDRMKEIYKEWEYRYESYDPKLTNMLTRAHLRNGMTNEAELLWEKVKERGGDFDFETCELFREHYLGKGDTTSALKWAEKMTKLPKKQGKQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0301500 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19529 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0301500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013840 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013440 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0185000 | RBH | 0.0352185 | 0.036145 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013360 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0183200 | RBH | 0.2337865 | 0.814259 | 0.69225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013490 | RBH | 0.228838 | 0.200532 | 0.967846 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013200 | RBH | 0.121301 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013520 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013290 | RBH | 0.0 | 0.0 | 0.0 |
