Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0011840 | OGI:01029250 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:9526772-9527413 | ||||||||
| Gene Symbol | YUCCA9, OsYUCCA9, OsYUC9, YUC9 | ||||||||||
| DNA seq | atggcggcggtggagcaggagcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgaggtcagctag
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| CDS seq | atggcggcggtggagcaggagcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgaggtcagctag
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| Protein seq | MAAVEQEQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLERDDCVASLWRHRTYDRVRLHLAKRYCALPHAPHGEASPTYLPRDDFLRYLDAYASRFGVRARLRREVRSARYDAARARWLVDAVDLATGRAERYAARHLVAAAGENDERVVPEVPGMETFPGKVVHAADYRSAEGFKGKSVLVVGGGNSGMEIAYDLAVGGAATSIVIRSEVS |
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| Function | Probable indole-3-pyruvate monooxygenase YUCCA11 [UniProtKB/Swiss-Prot:Q9LPL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0011840 | OsLiXu_01g0011840.01 | Chr01 | 9526772 | 9527413 | + | NAM | ||
| CDS seq | atggcggcggtggagcaggagcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgaggtcagctag
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| Protein seq | MAAVEQEQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLERDDCVASLWRHRTYDRVRLHLAKRYCALPHAPHGEASPTYLPRDDFLRYLDAYASRFGVRARLRREVRSARYDAARARWLVDAVDLATGRAERYAARHLVAAAGENDERVVPEVPGMETFPGKVVHAADYRSAEGFKGKSVLVVGGGNSGMEIAYDLAVGGAATSIVIRSEVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0273800 | RBH | 0.0 | 0.180907 | 0.431154 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16714 | RBH | 0.0 | 0.121675 | 0.110987 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0273800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012180 | RBH | 0.0 | 0.0 | 0.444124 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011860 | RBH | 0.0 | 2.267654 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0011670 | RBH | 0.0 | 0.794936 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011760 | RBH | 1.682632 | 15.786172 | 0.684891 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0159500 | RBH | 4.2915375 | 5.571316 | 0.0677775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011710 | RBH | 0.0 | 1.223635 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0157200 | SBH | 0.7985405 | 0.3050425 | 0.324084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0011710 | RBH | 0.000000 | 0.204776 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011790 | RBH | 0.0 | 4.705667 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0011690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011690 | RBH | 0.0 | 3.917140 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011840 | RBH | 0.0 | 1.856395 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0011680 | RBH | 0.0 | 0.000000 | 0.000000 |
