Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0010860 | OGI:01027200 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:8743813-8748465 | ||||||||
| Gene Symbol | RLCK28, OsRLCK28 | ||||||||||
| DNA seq | gtctgatccccactgttttttcttttccttttggccactctttgatttcttttttcaattctattgcgggtggagactttttggtttggccgcaatccaccaccccattcctatccatcctccttcagcttcttctttcttctcctcctcctccttgactgtcctaacaaaaaaatcgattttttgttctcctcttgatggttgctgcgaccttcgatgtccctatgcggaatgaaatctcctgctggggcggctaaaaatcggagattttctgtctttttgatccgtctttagtggagctttttgagcctgatttatgcgatgggcttcttggcgtgcttgttcccatgtcctcaagaggtgagagatgaggatgaggaaccaagaagcggccagagagtcagctcaggtggatttaattattctttttgttggaattcgttcttatgttcttgcaatcttgcttaaaaattggagtagaaatgtttggtgctgattggttagtgtcacttgtagcagttcttgtggagctaaatatgctctcaggtataagaggggcttttctttcatgcagtggaaggaaaaaagaatcgagttatttgtgatctattgatcttaatgattgtgctgttgggttcgggatgattcaggctggggttgtacattaatttaattttttatttagatactagacttattgtagtcaaccatcaggatttttcaattgtttgctcatttccccttttggtttgtggtgggagcaattatttgtgcaattcatctgaagtcacacgagaggatccAaaattagaagtttgtttgtaagtttggactttggagtgcgtaatttcaccgggagaagaggatagaaagaacatgaattagtttaagcggaattaaaattatgaagaagacgaacactgtggtagaaaaggaaacagtctgggtggactcgaagaaaatcgctaattttctactattcttgttttcgatttccaactctgtttctctttcaggatgtatcgagtctatcttcattaacagtggacgtgttcttttcttcccttgaaatttctcaataacagtggaatattcaaagtcgtcagagagttgcccactgaagactgaagggtcgatagatatggttggaattcggcgaaataaggggcatggtgaagcaacgatcttcactttgcgcgagcttgctgatgctaccaacaacttcagcacggagtgccttttgggccgaggaggattcggcagtgtgtataaagcatttctcaatgatagacaggtttgtattttctactcaagcacccaactccttatgcacttcgagtcccaagctatgccgcgagcatgaaacaagctttttcaacaacactgctttgaatactttgtgatattgataaaagaaactgttcctttggtcaaaattgatgggaatgcttagactattgatgttaacagaaagtattgttatgctatataccctttgtataaatttctaatttggttccagcatttgctgcatcgcaggttgttgcagttaaacagcttgatctaaatgggcttcagggaaacagagaattccttgtggaggttctcatgctcagtctcttgcatcatcctaatttagtcaagttgtttggttactgtgtggatggagatcagcgcctgcttatttatgaatatatgccattgggatcactagaagaccgccttcacggttagtattttattggaaattgtataatatcctctgttagctcctagaaaaacctgaaagttccctaagaatctgtagttgtgttagaaaacaTtttatatttttcattgttacatcatcgtgatttaaagcacatctaaccacttgaacatggtgaaaagaactgtcttctaggtgagaagaaataaaaaaaaataaagagctgataatttggcacctctttcagcattttaaagatcagtagctgatagtacataataacttcaatatagaaagagttcacaacttctgtacttttggatttccctgaattcgaagtgtgttttctgcattctatcttggcaaagaaaacaattggttttcttcaatgttccatccatcatattttctaaatttgaatttctattataatctgttgtatctgaagatggcttgaagtaattcctttaaatgataaacatcgcaaccttttaccttcaaatggctattactatgccttgctaaaacatcatttgacctttttattatgtatgatgaaggtgctattgtttttggcattgaaaattattatccagtattttggtagacctgtctaggatccagattagttttgtttccattgtcttatgcatctgatcaaaagctaaagctagcatggaatgttcaactttaggcagatctgtctagaattcagtgaggattcgagggcataacttttcataaccatccataaccacttttttttttttggtttgacgagaggaccctgcagtgtatattcaataataaagagatagattcagcatgtcgctgtttatcacccttcatgtccgtttctaccattagaccacatggttcaaaaagaattaaattgttctttacattccagtaagctacttaatttccttaagtattattactggataccctgttaaaaatttgctgccgatgctttttacagatctcagacccggccaagaaccactagattggacaacacggatgaagattgctgctgatgcagctgctggtttggagtatctgcatgatgaggccattccagcagttatttaccgggatattaaaccgtcaaacattcttcttggcgaagggtataatgcaaagttgtctgactttggacttgctaaacttggtcctgttggtgataagactcatgtgacaactcgtgtcatggggacacatggttattgtgctcctgagtacctctcgactggaaagcttacgatcaaatctgacatttatagttttggtgtggtctttcttgagctaattactggacgaagagcgcttgacagcaatcggccacctgatgaacaagacttggttgcatgggtatgtttctatcaataccagaatgttacgaaaggtcacaatgatcatattttcacaaagaaaaacaaaatgaggataaaagatgtattgtttaaagggcaacattgaaacaataatggcgtactggaattatagaaaatgctacaatacattttcttctgtgattaatttttatactacagctatcattaacaacattgtgctgtgtggataaggatcaaaaatggtatttggtcgaagttagtaacatttaattaacggtgcaagggtgggggtactggtgctatgtacaccttttcaaatatatagtgtgagctatgttctgagaacaaagtaaattatattattaattaacctccctgtatgcatcctaatgcctatggaacaggaagtaaatgtctcaatcttgtgtgtccaggagtttcctcgttctaggaaatgaatcttatctgtttcttaacataccccctcagtaccagttaaatgaccgttcatctaacttattgggtgtcctactaaattggatctgtccctttttcatcatttgatcccttgaatactattatgtttttaatgttaaatgttctatttgtctgcaggctcgtccattgttcaaagaccaaaggaaatttccaaagatggcggacccctcattacacggccacttcccgaaaaggggtctgttccaggctttggctattgcagcaatgtgtctgcaggagaaagcgaagaaccgcccttccattagggaggttgctgttgctctctcttatttagcatcacaaacacatgaaagtcagaacactgctgctcgccataccctgcctggcccttctgtaccaagagtgctggataatcagattaaccaagacacttccttgcccagtcaacatggagttcatatgccaccgcttgccgggacggatcacatggtacaagaagtcaaggagaattgccggagcagttcgcatcgaccgggaaggggcagagttaccccgaacggcgctgatagagagcgtgcgcttgcagaggcaaatgtatgggtcgaggcttggagacgtcaagagaagacgagcaaaatgcggtaatcaacgaaaagcttctcgctgctagcttcatttgatcataggaacagaattgacaaggtatgccacagattgcatacgttttgaagaaaccgcggaccgaataataactgttagaagacgatagcgaataataatgatcagtgagttcttctgtggacctacaccagagtgagcgcttgggagatttcaccggtgaagtctactaaatttacatccagacttgtttcactacatacatggattcttatttctcatcatatagataatttagcttctataggttaaagtcgcaggaggggatatgtacatgtaaataaccccctcataacagaagtggcagatgcagagcatacatatatttcttttctgtagttggatgtctcttgtgaatccatgtacatgagctggtaccataagtgctacagcttatacatttttcagatgattcttggtgttaactctcccttgcaattctctgttctc
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| CDS seq | atgggcttcttggcgtgcttgttcccatgtcctcaagaggtgagagatgaggatgaggaaccaagaagcggccagagagtcagctcagtggaatattcaaagtcgtcagagagttgcccactgaagactgaagggtcgatagatatggttggaattcggcgaaataaggggcatggtgaagcaacgatcttcactttgcgcgagcttgctgatgctaccaacaacttcagcacggagtgccttttgggccgaggaggattcggcagtgtgtataaagcatttctcaatgatagacaggttgttgcagttaaacagcttgatctaaatgggcttcagggaaacagagaattccttgtggaggttctcatgctcagtctcttgcatcatcctaatttagtcaagttgtttggttactgtgtggatggagatcagcgcctgcttatttatgaatatatgccattgggatcactagaagaccgccttcacgatctcagacccggccaagaaccactagattggacaacacggatgaagattgctgctgatgcagctgctggtttggagtatctgcatgatgaggccattccagcagttatttaccgggatattaaaccgtcaaacattcttcttggcgaagggtataatgcaaagttgtctgactttggacttgctaaacttggtcctgttggtgataagactcatgtgacaactcgtgtcatggggacacatggttattgtgctcctgagtacctctcgactggaaagcttacgatcaaatctgacatttatagttttggtgtggtctttcttgagctaattactggacgaagagcgcttgacagcaatcggccacctgatgaacaagacttggttgcatgggctcgtccattgttcaaagaccaaaggaaatttccaaagatggcggacccctcattacacggccacttcccgaaaaggggtctgttccaggctttggctattgcagcaatgtgtctgcaggagaaagcgaagaaccgcccttccattagggaggttgctgttgctctctcttatttagcatcacaaacacatgaaagtcagaacactgctgctcgccataccctgcctggcccttctgtaccaagagtgctggataatcagattaaccaagacacttccttgcccagtcaacatggagttcatatgccaccgcttgccgggacggatcacatggtacaagaagtcaaggagaattgccggagcagttcgcatcgaccgggaaggggcagagttaccccgaacggcgctgatagagagcgtgcgcttgcagaggcaaatgtatgggtcgaggcttggagacgtcaagagaagacgagcaaaatgcggtaa
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| Protein seq | MGFLACLFPCPQEVRDEDEEPRSGQRVSSVEYSKSSESCPLKTEGSIDMVGIRRNKGHGEATIFTLRELADATNNFSTECLLGRGGFGSVYKAFLNDRQVVAVKQLDLNGLQGNREFLVEVLMLSLLHHPNLVKLFGYCVDGDQRLLIYEYMPLGSLEDRLHDLRPGQEPLDWTTRMKIAADAAAGLEYLHDEAIPAVIYRDIKPSNILLGEGYNAKLSDFGLAKLGPVGDKTHVTTRVMGTHGYCAPEYLSTGKLTIKSDIYSFGVVFLELITGRRALDSNRPPDEQDLVAWARPLFKDQRKFPKMADPSLHGHFPKRGLFQALAIAAMCLQEKAKNRPSIREVAVALSYLASQTHESQNTAARHTLPGPSVPRVLDNQINQDTSLPSQHGVHMPPLAGTDHMVQEVKENCRSSSHRPGRGRVTPNGADRERALAEANVWVEAWRRQEKTSKMR |
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| Function | Serine/threonine-protein kinase PBL27 [UniProtKB/Swiss-Prot:Q1PDV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0010860 | OsLiXu_01g0010860.02 | Chr01 | 8743813 | 8748465 | + | NAM | ||
| CDS seq | atggttggaattcggcgaaataaggggcatggtgaagcaacgatcttcactttgcgcgagcttgctgatgctaccaacaacttcagcacggagtgccttttgggccgaggaggattcggcagtgtgtataaagcatttctcaatgatagacaggttgttgcagttaaacagcttgatctaaatgggcttcagggaaacagagaattccttgtggaggttctcatgctcagtctcttgcatcatcctaatttagtcaagttgtttggttactgtgtggatggagatcagcgcctgcttatttatgaatatatgccattgggatcactagaagaccgccttcacgatctcagacccggccaagaaccactagattggacaacacggatgaagattgctgctgatgcagctgctggtttggagtatctgcatgatgaggccattccagcagttatttaccgggatattaaaccgtcaaacattcttcttggcgaagggtataatgcaaagttgtctgactttggacttgctaaacttggtcctgttggtgataagactcatgtgacaactcgtgtcatggggacacatggttattgtgctcctgagtacctctcgactggaaagcttacgatcaaatctgacatttatagttttggtgtggtctttcttgagctaattactggacgaagagcgcttgacagcaatcggccacctgatgaacaagacttggttgcatgggctcgtccattgttcaaagaccaaaggaaatttccaaagatggcggacccctcattacacggccacttcccgaaaaggggtctgttccaggctttggctattgcagcaatgtgtctgcaggagaaagcgaagaaccgcccttccattagggaggttgctgttgctctctcttatttagcatcacaaacacatgaaagtcagaacactgctgctcgccataccctgcctggcccttctgtaccaagagtgctggataatcagattaaccaagacacttccttgcccagtcaacatggagttcatatgccaccgcttgccgggacggatcacatggtacaagaagtcaaggagaattgccggagcagttcgcatcgaccgggaaggggcagagttaccccgaacggcgctgatagagagcgtgcgcttgcagaggcaaatgtatgggtcgaggcttggagacgtcaagagaagacgagcaaaatgcggtaa
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| Protein seq | MVGIRRNKGHGEATIFTLRELADATNNFSTECLLGRGGFGSVYKAFLNDRQVVAVKQLDLNGLQGNREFLVEVLMLSLLHHPNLVKLFGYCVDGDQRLLIYEYMPLGSLEDRLHDLRPGQEPLDWTTRMKIAADAAAGLEYLHDEAIPAVIYRDIKPSNILLGEGYNAKLSDFGLAKLGPVGDKTHVTTRVMGTHGYCAPEYLSTGKLTIKSDIYSFGVVFLELITGRRALDSNRPPDEQDLVAWARPLFKDQRKFPKMADPSLHGHFPKRGLFQALAIAAMCLQEKAKNRPSIREVAVALSYLASQTHESQNTAARHTLPGPSVPRVLDNQINQDTSLPSQHGVHMPPLAGTDHMVQEVKENCRSSSHRPGRGRVTPNGADRERALAEANVWVEAWRRQEKTSKMR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0010860 | OsLiXu_01g0010860.01 | Chr01 | 8743813 | 8748465 | + | NAM | ||
| CDS seq | atgggcttcttggcgtgcttgttcccatgtcctcaagaggtgagagatgaggatgaggaaccaagaagcggccagagagtcagctcagtggaatattcaaagtcgtcagagagttgcccactgaagactgaagggtcgatagatatggttggaattcggcgaaataaggggcatggtgaagcaacgatcttcactttgcgcgagcttgctgatgctaccaacaacttcagcacggagtgccttttgggccgaggaggattcggcagtgtgtataaagcatttctcaatgatagacaggttgttgcagttaaacagcttgatctaaatgggcttcagggaaacagagaattccttgtggaggttctcatgctcagtctcttgcatcatcctaatttagtcaagttgtttggttactgtgtggatggagatcagcgcctgcttatttatgaatatatgccattgggatcactagaagaccgccttcacgatctcagacccggccaagaaccactagattggacaacacggatgaagattgctgctgatgcagctgctggtttggagtatctgcatgatgaggccattccagcagttatttaccgggatattaaaccgtcaaacattcttcttggcgaagggtataatgcaaagttgtctgactttggacttgctaaacttggtcctgttggtgataagactcatgtgacaactcgtgtcatggggacacatggttattgtgctcctgagtacctctcgactggaaagcttacgatcaaatctgacatttatagttttggtgtggtctttcttgagctaattactggacgaagagcgcttgacagcaatcggccacctgatgaacaagacttggttgcatgggctcgtccattgttcaaagaccaaaggaaatttccaaagatggcggacccctcattacacggccacttcccgaaaaggggtctgttccaggctttggctattgcagcaatgtgtctgcaggagaaagcgaagaaccgcccttccattagggaggttgctgttgctctctcttatttagcatcacaaacacatgaaagtcagaacactgctgctcgccataccctgcctggcccttctgtaccaagagtgctggataatcagattaaccaagacacttccttgcccagtcaacatggagttcatatgccaccgcttgccgggacggatcacatggtacaagaagtcaaggagaattgccggagcagttcgcatcgaccgggaaggggcagagttaccccgaacggcgctgatagagagcgtgcgcttgcagaggcaaatgtatgggtcgaggcttggagacgtcaagagaagacgagcaaaatgcggtaa
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| Protein seq | MGFLACLFPCPQEVRDEDEEPRSGQRVSSVEYSKSSESCPLKTEGSIDMVGIRRNKGHGEATIFTLRELADATNNFSTECLLGRGGFGSVYKAFLNDRQVVAVKQLDLNGLQGNREFLVEVLMLSLLHHPNLVKLFGYCVDGDQRLLIYEYMPLGSLEDRLHDLRPGQEPLDWTTRMKIAADAAAGLEYLHDEAIPAVIYRDIKPSNILLGEGYNAKLSDFGLAKLGPVGDKTHVTTRVMGTHGYCAPEYLSTGKLTIKSDIYSFGVVFLELITGRRALDSNRPPDEQDLVAWARPLFKDQRKFPKMADPSLHGHFPKRGLFQALAIAAMCLQEKAKNRPSIREVAVALSYLASQTHESQNTAARHTLPGPSVPRVLDNQINQDTSLPSQHGVHMPPLAGTDHMVQEVKENCRSSSHRPGRGRVTPNGADRERALAEANVWVEAWRRQEKTSKMR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 8744221 | 8744898 | + | OsLiXu_01g0010860.02 | OsLiXu_01g0010860.01,OsLiXu_01g0010860.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.234043 | 1.667958 | 1.744541 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0259200 | RBH | 4.972650 | 5.058679 | 5.353328 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15470 | RBH | 2.923800 | 3.242062 | 1.336411 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0259200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011180 | RBH | 1.171892 | 23.929869 | 5.731894 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010830 | RBH | 0.473561 | 5.792796 | 3.119097 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011190 | RBH | 3.751087 | 20.987961 | 10.504573 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010690 | RBH | 0.766497 | 0.337957 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010740 | RBH | 16.370939 | 19.672483 | 20.465132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0145200 | RBH | 8.933703 | 27.233408 | 11.851198 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010740 | RBH | 1.103987 | 1.161343 | 1.195952 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0143700 | RBH | 10.677816 | 34.0183535 | 8.3823735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010710 | RBH | 0.399230 | 0.488745 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010770 | RBH | 2.110916 | 11.364614 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010710 | RBH | 5.245542 | 29.373959 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010700 | RBH | 1.592150 | 15.380566 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010850 | RBH | 2.287960 | 1.766292 | 3.883076 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010720 | RBH | 4.374354 | 48.873402 | 11.933980 |
