Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0009470 | OGI:01023640 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:7608829-7613934 | ||||||||
| Gene Symbol | ARF16, OsARF16, OsARF2, OsARF1 | ||||||||||
| DNA seq | gggggtgacacgagagagagcctaaccaacgccccctaacctgacacgagagagagcacagagcagagcagcaccacccggtgaccacaccacaccaccccaaacaccaccacccccacctccctccctcctcactcttgccgcctctcttcttcttcttcttctctcctcacttcgctcgctccctcggtcgctcggccgccatgtcgtcgcaaggtgacgcgctgcctctggttcttgttttgttcttgttcttgtttttgttttgttttgtttgccgggaggtttgatggtgggggggggcgcatgcaggagcaggaggaggggtaggggacccggagctgttcgcggtgctgtggcgggcctgcgcggggccgctggtggaggtgccgcagcgggacgagcgggtgttctacttcctccagggccacctcgagcaggttcttgccttgcctctcgccgccgccgaattctttggtttctgtccttccattctcgccgggagcgagcgagtgatgatgacgcgcttcttcttgttgttgttgttgtttgtgcagctgcaagagccgacggacccggcgctgctggcggagcaaatcaagatgttccaggtgccgtacaagatcctctgcaaggtcgtcaacgtcgagctcaaggtaatctctctctctctctctctctctctctccggtgtgggggcgcaaagagaggaggaaaaagaaaaggaaaaggcccccgtgaaattctcttacgtttccttgtttgtttgtggctgcaggccgagacggaaaccgacgaggtgttcgcgcagattaccctgcagcctgacccggatgtgagtggtgaccaccaccgttttttttttcttcttttttgttgtgctcttgtcgcctcctctgatggttttggaatgtactttgtgctgctgccctgttctacaatcgtggtgatccttttgggttccccttaattttgattctgctttcatttttttttagataatggattaaaaacccggcctctacatccaacgggatgtacacagccatgattctgctttcatgtcctgaattttggcatgttttaacagcggtctttttttactgaaagtaaatttacttgatgtgtactttggatcacattgtgttatatgccgaattggcccggaaaaggcagcaattttgggtttggtgtgtgaaaaaagggggagtgatttggggctccactgtttttcagcaagagaatctgccaacattacctgacccgcccctgccggagcagccgaggcctgtggtgcactccttctgcaagatcctgaccccatccgacaccagcacccatggcgggttctccgtgctccgacggcatgccaacgagtgcctcccgccactggtatgcgtaattctcttggtttttggtgatagtagtatgttcccggctatgtatgtcaaaatcatatatcttgtttgttgctaatcaggatatgtccatggcgacaccaacccaagagctcatcacaaaggaccttcatggatctgagtggaggtttaagcacatctacaggggtatgcaaatttttgtttttattctcttggttatcagctcgatcgttatctaatcatttgaccaccacaccatgatcaagattgtagtagctttatgtgcatgctggcgcttattcgtgcaattctcggttccctaggccaaccccgtaggcatcttctgactactggatggagcacgtttgtgacatcgaagaagctgatttctggcgacgcgtttgtctacttgaggttagatccccacttaccttcagtgcttgttattcttcagacctgtacaagtttatgcagatgttcacaagatttatgtatcaaaagggatcatgcatattttgcttttgtaggagtgagacaggagagcagcgtgtcggagtgaggcgtcttgtgcagaaacagagcacaatgccggcatctgttatatcaagccaaagcatgcatcttggtgtgcttgcaagtgcatctcatgctatcaagactaattcaattttcctagtgtactacaggccaaggttgggccatttctgccatcatttgttatgatacaactgtagttattctctgctaatgggtgctgttgtttgtttgttttaaaggttaagccaaagccaatatattgttagtgtgaataagtaccttgcggctagtaaggttggatttaatgtgggcatgaggttcaagatgagttttgaaggggaagacgtcccggttaaaaagtaatggttttacctctggtttcatgtgtttctatttcactttcttcttgatatgttgtagcatctcatgttcaaatggtcgatgtaattttctgtaggttttctggaactatagttggtgaaggtgatctttctctgcagtggtcaggttctgaatggaagtccttgaaggtaagataaaatcatttattgttgttttagatttcttttcttaaaaagtgctgattgccatctcaactgttcttgatgtaggtccaatgggatgaagtcacaaatgttaatggccctgagagggtttccccttgggaaattgaaacatgtgatggcactgcacctgccatcaatgtacccctgcagtcagcaacgaaaaacaagcggcctagggagccaagtgaaactattgaccttcaatcactgggtatgacattcatttgtgcattgctcaacttgccaataacttgtggaattatttggctcttaatccttttgttttcgtttgcagaaccagctcaagagttttggctatctggaatgccacaacagcatgagaagacaggtattggttccagtgaacctaattgtatctctggacatcaagttgtttggccaggcgagcatccaggatatggtgccgtgagtagttcagtttgtcagaatccgctagtacttgaaagttggttgaaggatttcaactcttcaaacaagggtgtctcccctaccttgtcagagatttctcagaaaatttttcaggttaccagcaatgaagcaagaattgctacatggcctgcacgttctgcttaccaagctgaggagcccacttccaagttgtcttcgaacaccgctgcctgtggttaccgaactgaagaagttgctccaaatgcgtccaaggttgttgaaggaaaaaaggaacctgccatgtttcgtctgtttggtgtggatttgatgaaatgtaccagcatatctactaccactgatgacaagtcaagtgtgggagcaggagaagcttcagccaaaggtactggttctcacgaagactctggtcagctgtcagcattctcaaaagtgacaaaagagcatattgctgcggatgaaagcccccaagagatccaaagccatcagaattacaccgctagaactcgcataaaggtataaatttatctgtctccccctcgagaccttttatggtgcttgggaggtacccagggtacctctcaaactattgagtatcaaccgttgattgctaaagggtagatttgggatagagataatttaatttgcacagattgttttaagtcataagaaccatgatcttttcctgatcatttgctgctagccccgaactttcttgtctgccattgatatgctcgtcttatacttcattattctttacgtaattcatcttcacttgtagcgtatcacatctctgttgcctagcctttcaaaggcatgtttgttctctgttctctctggctgaccatggcggtggctcacattttataattgatttatcgatgaactctcaaagcatcaaagtttaaaatagtagtactccgtattacactacctatcatataaaataataactcagtagtctatcacagattccatgtaatctgtattaggatcttcatactacgaacagtttttgaaaaagaactgtactacgagcagtttgatcgagaagaaccaaaactttcttcaccgatttgccttatctgatagtagattgatataataccaaggacaaaattacctatctaacctcccacttaatctttaaattaatacctggcccacttcttaagtaccttttcagaggtatcttttgatgtaaaccattagattgaggtggatcaacggatgttatggtttcaaagtaccggagaaagtctcctcctgcttcttaaactgtaactgactcaacatttctactaggttcaaatgcatggaaatgctgtgggcagagctgtggatctagctaatctagacggatatgagcaactgatgaatgagctggaagagatgttcaatataaaggacctcaaacaaaaatggaaggtggctttcactgatgatgagggtgacacaatggaagttggagatgatccttggctgtaagcttctgcatatttttaatagagtggcagattattgttcatccgacaaaaacttatgattgtgtatatttgcgactcctgcagggaattttgccagatggtcagaaagattgtgctctatcccattgaagacgagaagaagatcgagcctcacccgaagttactgtcttcagctaatccagagcaggatcagaagactgggttttaggagggaggctagggctgaaaggtggattttttagcctttcaccattgaagcgttggtggctatcgttttgtcgttggagatggtcgtagctgaaaaaatggtggctactggctagttcgtcgtattgatgcaacagatttgttgctggtgtcaaaactgtttcttcacaagcattttgaagaacaaattgatgtaacataggtttcaagaaaaaaaaagatttgacaatgtctctttagtagtttgctcaagtttagtcaaaaccttaatggtgcttaaggaataacgtgaagctataaaactggtgtgtaagttctgtaaatattataagggagattataattttgtgatattagctttcaccctttaatttattggtatatattgacatgtagatttcattgttcttgatcagtctgatcgtctgaccttgctatcagatgtactgaaccatgtttctcaatattttcactattgcgatttaacattctaaaattcaaggcgaa
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| CDS seq | atgtcgtcgcaaggagcaggaggaggggtaggggacccggagctgttcgcggtgctgtggcgggcctgcgcggggccgctggtggaggtgccgcagcgggacgagcgggtgttctacttcctccagggccacctcgagcagctgcaagagccgacggacccggcgctgctggcggagcaaatcaagatgttccaggtgccgtacaagatcctctgcaaggtcgtcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcagattaccctgcagcctgacccggatcaagagaatctgccaacattacctgacccgcccctgccggagcagccgaggcctgtggtgcactccttctgcaagatcctgaccccatccgacaccagcacccatggcgggttctccgtgctccgacggcatgccaacgagtgcctcccgccactggatatgtccatggcgacaccaacccaagagctcatcacaaaggaccttcatggatctgagtggaggtttaagcacatctacaggggccaaccccgtaggcatcttctgactactggatggagcacgtttgtgacatcgaagaagctgatttctggcgacgcgtttgtctacttgaggagtgagacaggagagcagcgtgtcggagtgaggcgtcttgtgcagaaacagagcacaatgccggcatctgttatatcaagccaaagcatgcatcttggtgtgcttgcaagtgcatctcatgctatcaagactaattcaattttcctagtgtactacaggccaaggttaagccaaagccaatatattgttagtgtgaataagtaccttgcggctagtaaggttggatttaatgtgggcatgaggttcaagatgagttttgaaggggaagacgtcccggttaaaaagttttctggaactatagttggtgaaggtgatctttctctgcagtggtcaggttctgaatggaagtccttgaaggtccaatgggatgaagtcacaaatgttaatggccctgagagggtttccccttgggaaattgaaacatgtgatggcactgcacctgccatcaatgtacccctgcagtcagcaacgaaaaacaagcggcctagggagccaagtgaaactattgaccttcaatcactggaaccagctcaagagttttggctatctggaatgccacaacagcatgagaagacaggtattggttccagtgaacctaattgtatctctggacatcaagttgtttggccaggcgagcatccaggatatggtgccgtgagtagttcagtttgtcagaatccgctagtacttgaaagttggttgaaggatttcaactcttcaaacaagggtgtctcccctaccttgtcagagatttctcagaaaatttttcaggttaccagcaatgaagcaagaattgctacatggcctgcacgttctgcttaccaagctgaggagcccacttccaagttgtcttcgaacaccgctgcctgtggttaccgaactgaagaagttgctccaaatgcgtccaaggttgttgaaggaaaaaaggaacctgccatgtttcgtctgtttggtgtggatttgatgaaatgtaccagcatatctactaccactgatgacaagtcaagtgtgggagcaggagaagcttcagccaaaggtactggttctcacgaagactctggtcagctgtcagcattctcaaaagtgacaaaagagcatattgctgcggatgaaagcccccaagagatccaaagccatcagaattacaccgctagaactcgcataaaggttcaaatgcatggaaatgctgtgggcagagctgtggatctagctaatctagacggatatgagcaactgatgaatgagctggaagagatgttcaatataaaggacctcaaacaaaaatggaaggtggctttcactgatgatgagggtgacacaatggaagttggagatgatccttggctggaattttgccagatggtcagaaagattgtgctctatcccattgaagacgagaagaagatcgagcctcacccgaagttactgtcttcagctaatccagagcaggatcagaagactgggttttag
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| Protein seq | MSSQGAGGGVGDPELFAVLWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVNKYLAASKVGFNVGMRFKMSFEGEDVPVKKFSGTIVGEGDLSLQWSGSEWKSLKVQWDEVTNVNGPERVSPWEIETCDGTAPAINVPLQSATKNKRPREPSETIDLQSLEPAQEFWLSGMPQQHEKTGIGSSEPNCISGHQVVWPGEHPGYGAVSSSVCQNPLVLESWLKDFNSSNKGVSPTLSEISQKIFQVTSNEARIATWPARSAYQAEEPTSKLSSNTAACGYRTEEVAPNASKVVEGKKEPAMFRLFGVDLMKCTSISTTTDDKSSVGAGEASAKGTGSHEDSGQLSAFSKVTKEHIAADESPQEIQSHQNYTARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFNIKDLKQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKIEPHPKLLSSANPEQDQKTGF |
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| Function | Auxin response factor 1 [UniProtKB/Swiss-Prot:Q5NB85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0009470 | OsLiXu_01g0009470.01 | Chr01 | 7608829 | 7613934 | + | NAM | ||
| CDS seq | atgtcgtcgcaaggagcaggaggaggggtaggggacccggagctgttcgcggtgctgtggcgggcctgcgcggggccgctggtggaggtgccgcagcgggacgagcgggtgttctacttcctccagggccacctcgagcagctgcaagagccgacggacccggcgctgctggcggagcaaatcaagatgttccaggtgccgtacaagatcctctgcaaggtcgtcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcagattaccctgcagcctgacccggatcaagagaatctgccaacattacctgacccgcccctgccggagcagccgaggcctgtggtgcactccttctgcaagatcctgaccccatccgacaccagcacccatggcgggttctccgtgctccgacggcatgccaacgagtgcctcccgccactggatatgtccatggcgacaccaacccaagagctcatcacaaaggaccttcatggatctgagtggaggtttaagcacatctacaggggccaaccccgtaggcatcttctgactactggatggagcacgtttgtgacatcgaagaagctgatttctggcgacgcgtttgtctacttgaggagtgagacaggagagcagcgtgtcggagtgaggcgtcttgtgcagaaacagagcacaatgccggcatctgttatatcaagccaaagcatgcatcttggtgtgcttgcaagtgcatctcatgctatcaagactaattcaattttcctagtgtactacaggccaaggttaagccaaagccaatatattgttagtgtgaataagtaccttgcggctagtaaggttggatttaatgtgggcatgaggttcaagatgagttttgaaggggaagacgtcccggttaaaaagttttctggaactatagttggtgaaggtgatctttctctgcagtggtcaggttctgaatggaagtccttgaaggtccaatgggatgaagtcacaaatgttaatggccctgagagggtttccccttgggaaattgaaacatgtgatggcactgcacctgccatcaatgtacccctgcagtcagcaacgaaaaacaagcggcctagggagccaagtgaaactattgaccttcaatcactggaaccagctcaagagttttggctatctggaatgccacaacagcatgagaagacaggtattggttccagtgaacctaattgtatctctggacatcaagttgtttggccaggcgagcatccaggatatggtgccgtgagtagttcagtttgtcagaatccgctagtacttgaaagttggttgaaggatttcaactcttcaaacaagggtgtctcccctaccttgtcagagatttctcagaaaatttttcaggttaccagcaatgaagcaagaattgctacatggcctgcacgttctgcttaccaagctgaggagcccacttccaagttgtcttcgaacaccgctgcctgtggttaccgaactgaagaagttgctccaaatgcgtccaaggttgttgaaggaaaaaaggaacctgccatgtttcgtctgtttggtgtggatttgatgaaatgtaccagcatatctactaccactgatgacaagtcaagtgtgggagcaggagaagcttcagccaaaggtactggttctcacgaagactctggtcagctgtcagcattctcaaaagtgacaaaagagcatattgctgcggatgaaagcccccaagagatccaaagccatcagaattacaccgctagaactcgcataaaggttcaaatgcatggaaatgctgtgggcagagctgtggatctagctaatctagacggatatgagcaactgatgaatgagctggaagagatgttcaatataaaggacctcaaacaaaaatggaaggtggctttcactgatgatgagggtgacacaatggaagttggagatgatccttggctggaattttgccagatggtcagaaagattgtgctctatcccattgaagacgagaagaagatcgagcctcacccgaagttactgtcttcagctaatccagagcaggatcagaagactgggttttag
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| Protein seq | MSSQGAGGGVGDPELFAVLWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVNKYLAASKVGFNVGMRFKMSFEGEDVPVKKFSGTIVGEGDLSLQWSGSEWKSLKVQWDEVTNVNGPERVSPWEIETCDGTAPAINVPLQSATKNKRPREPSETIDLQSLEPAQEFWLSGMPQQHEKTGIGSSEPNCISGHQVVWPGEHPGYGAVSSSVCQNPLVLESWLKDFNSSNKGVSPTLSEISQKIFQVTSNEARIATWPARSAYQAEEPTSKLSSNTAACGYRTEEVAPNASKVVEGKKEPAMFRLFGVDLMKCTSISTTTDDKSSVGAGEASAKGTGSHEDSGQLSAFSKVTKEHIAADESPQEIQSHQNYTARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFNIKDLKQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKIEPHPKLLSSANPEQDQKTGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.270479 | 0.862466 | 1.423826 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0236300 | RBH | 0.479573 | 0.781347 | 7.346121 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13520 | RBH | 0.291456 | 0.472280 | 1.728168 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0236300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009790 | RBH | 0.072631 | 16.616581 | 18.209442 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009430 | RBH | 0.043492 | 7.438605 | 6.610901 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009770 | RBH | 0.0 | 15.093574 | 16.406857 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009320 | RBH | 0.072510 | 0.302181 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009350 | RBH | 0.000000 | 16.733910 | 30.307734 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0123500 | RBH | 1.165937 | 31.76861 | 17.3308145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009360 | RBH | 0.102228 | 1.117787 | 2.786732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0123000 | RBH | 1.529791 | 10.7121105 | 16.3650725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007950 | RBH | 0.029535 | 0.151759 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009380 | RBH | 0.256571 | 11.606738 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009350 | RBH | 0.000000 | 25.877750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009280 | RBH | 0.040104 | 6.521684 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009420 | RBH | 0.159766 | 3.297259 | 4.982078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009310 | RBH | 0.0 | 16.476580 | 16.420908 |
