Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0009270 | OGI:01023170 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:7470460-7474811 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagcagaagatggaactagtccatcaaaggctcgccttacttgacagcagcagtggcagcgacagggatgacgatattgggccgagggtgagattcttgcattatcatttcccattgatgcgatacatacattgttgttgttgcaaggcattcaaatcaggacaggttctaactggaaaaaatgggagaggcatatactacaatacctgggtgtatgcccaatctggattcttaatttgataatattatctacttctacttaaatgctaccctgaataattcatgtatcgcagcacatctgtatgttgatatgtcacttcacaatctggattctatccgctcgttcttgcatgtttatgaagtgacatatcacatattaatctactccctttgtcccaaaatataagcatttttagctatgaatatggacaactgtgtgtctagattcatagccaaaagctgttacattttgggacggaggtagtatcttatcaaatttttttcataactatttggatgacatacaagaaagagggattaaaaagagtttcccgtaggttcacaaattttgtaactctgaacaggtaagtcatgacaaattatcagatgctgtatttgcttaaatggtcactttatgtgttaactgtgaattttatccaggtctataaagtactatagatgttaatatatttctctataacttgatcgaatgagagaagttttgacttaggacaaaactaaaagaccctgaattatggaaaggagggggtatttctagcttatgtttcttttttctgttaatgctcattaacatctggtagcccctataataatcaagggttaattggatctatgccattataagaatcatgtatttaccatgatatcaagaatatatgttctttttgtacttgcagaattataatcttgcttttgttgttgctccacaggctataataattgattgtgatgaagatgatacggatgacgtgatggaggttgttcctttgaaagtaagggcagtgctgctttagttagcgggtggaattttgtcactcgagaagacatccccttgttttgtgcatgttgttcaaaaagtcataaaaaattgaaaacataagatagatcaatatgtaaaatatctcttcacaaacatgcaggttcaaattcgacctatacaagtagaaaaacaaaaacaataaatttgattacaaatagtgtgttttgttctatcgtgtcacatattgatctataatgtcaaatcttcttaaacttttttatgatgttttgggcgacatgcacaaaacaaggggatgtctcctcaagggacaaatagacttttccctttatatgattatctgtttacaatggtgtaagtttatatgatataaactacatgtgctctatttagagcatccctgtcaatgatgctacatcattgatagcactctatgtagcaacaatattttcaattgcacaaactcacaatatctgtcctccttgttatctcataacttcatttattaattctcatctcaaaaacaacttattgattaagtgttctgatttttcttggatttcttactgtgcaagatgctgatgccaaaggaggtggaaaatgagcaaagaacggttcctggcattcctcaaacatgcaatacccagaacactagcaatggacgcactaacaccactgaagtaagatatgttcaccaactctatctgtattgtatgaatgcagtatgaatgtaattgtaagaggactttcagttttcatctataaagctcataatacccctaaagatttttatatcataagccatagcatttaggatttcgattggctggctgaaatctccggttttccaattcgaaaaaaaagatcacataatgtaatcctggaacacatctccaatctttattcagtggactttaccatttcctttccaattcctgtataatgtatacgaaaccgttgcacttttgagctccattactcataactgaatgagttgtgacttaacaggtgccagttaagggccaaaataaatgtgcaaggtattccagctctccttgttcttcttatgaaaaaaactacttatgtagctcacaagcttgttcaatcacacgcagttatcttccaaaaaaatctagtgttcaggcgttctgtggatctgctatgaagagagctcaagagattcaaacgaagttaccagcagagcatcctagctttgttaaacatatgttacattcacatgttgtcagcggattttggctggtaagggttgtagattactagcttttcttatgcttgtcaatttatgaagccttagataattgtttcttatgaacaggctgtggagaagcaccttctgcagaaacatacaaattgcatttactattagaagattttatttgtcaaacaaatgctctcactaaaattagaaagtaaaagtttaaagcgtgttatggatcttatttaaaacttcctacttccctattaacatgttctaaacttctaatctttttcattaaattttgttttaggaagagaagtctcacacatacaagttatatccaacttatgtacatttcttgcatgttagctcttactgcttgagttattgtgtttatgaaaatggctgacactagttctgcacaagccacctagaaacttctttttggttttctctgcatctgattattgttctcctctgcagggtctaccagctggcttctgcaacaagtatctcccaaagcatgacactgacattgtgctcgaagatgagaatgggaacaaccataacacaaattacctgggtggtaagcagggactcagtgctggatggagaggttttgcgattaaccatgatatcaaggttggcgatgttgtggtctttgagcttgtgagcacaacaaaattcaaggcaagtgtttctgaaatgcttgataactttcttccaagtctactactactacttgattgttcctttataatcttcattcatacccatttcttgagttcccttgtgggttcagtcttccctaatccaacaatacaattacctcttgtttcttcatgccttacattcaggtgcatataattagagataaaaacatcagcccaactgacagagcacccggtctcaagagtttttacgcctgcaagaaacggaagatatctagtgagtcaaagtttatgttgttagttttgcaccttgaaatgtgttagacatgggaatatacactaactattgaatctcccgaatcatgtgctgtgttctacatgacagaagaagctactgataatgccaccaagcctaaggaggatccagagactactagagtcagtagcaaagtggctcatgatgatacccagaatctagttcatgaagcaatagacggcatcaggttttcagactcggagatgagctttgacgacgtgatgagctacagtaacttcaacatcgtcgtggacggcttggtcattgactgcaagttccccgatcaccagcgcaggacgtactatgagctgtgctgcgcccagaagtcgttcctccacaggcatctgctgaggcagctgagcctcacgctcgtcgtgggggtgatcatggagacgatcaacatcgctgagggcatcagggcctgcggggcgggtacctcctcgcaagaggacttcctgatctggaagaagacgctgcagtcattcgacctgctgggaatgaatgttgcgttcttgctcaagcgcgttgacgatcttctcggcctccccgagcaaccgagggatccatcggagtgtagcaagtacaatgagctgaagcttgagcggtctcgtgctggggagaaggtgaaggctctggagtccatgatgttgacagtgaaggatgtgctgaagaagatcgatgccgagatggaggagatggagtcgagcgtgaggaaccatgacattgcgctgcggaagatcgccactgcgccatggtgatcctgcttgacatctggggtacttgtctgaaacattttgggttcgtcattcagggtttcagatgatgatgatgatgatgatgcactgggaaaccttcgtggtgagtgactgagtggtgaatcctgctaaactcaaggactgaccacatttttgtgtacatttcttcagttactaccacgcagctcagtgcctatctagaactgttcagcagcaaacctgtctaggaatcaggatgctgtttttacacggtaaatcgtataacagaagttgtaaattttggggggcgaatgcgctgtaagcagtgcaggaaatgcgaggaagaaatgcagaacactacttaattatttcagactccgtcattcagtgc
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| CDS seq | atggagcagaagatggaactagtccatcaaaggctcgccttacttgacagcagcagtggcagcgacagggatgacgatattgggccgaggatgctgatgccaaaggaggtggaaaatgagcaaagaacggttcctggcattcctcaaacatgcaatacccagaacactagcaatggacgcactaacaccactgaagtgccagttaagggccaaaataaatgtgcaagttatcttccaaaaaaatctagtgttcaggcgttctgtggatctgctatgaagagagctcaagagattcaaacgaagttaccagcagagcatcctagctttgttaaacatatgttacattcacatgttgtcagcggattttggctgggtctaccagctggcttctgcaacaagtatctcccaaagcatgacactgacattgtgctcgaagatgagaatgggaacaaccataacacaaattacctgggtggtaagcagggactcagtgctggatggagaggttttgcgattaaccatgatatcaaggttggcgatgttgtggtctttgagcttgtgcatataattagagataaaaacatcagcccaactgacagagcacccggtctcaagagtttttacgcctgcaagaaacggaagatatctaaagaagctactgataatgccaccaagcctaaggaggatccagagactactagagtcagtagcaaagtggctcatgatgatacccagaatctagttcatgaagcaatagacggcatcaggttttcagactcggagatgagctttgacgacgtgatgagctacagtaacttcaacatcgtcgtggacggcttggtcattgactgcaagttccccgatcaccagcgcaggacgtactatgagctgtgctgcgcccagaagtcgttcctccacaggcatctgctgaggcagctgagcctcacgctcgtcgtgggggtgatcatggagacgatcaacatcgctgagggcatcagggcctgcggggcgggtacctcctcgcaagaggacttcctgatctggaagaagacgctgcagtcattcgacctgctgggaatgaatgttgcgttcttgctcaagcgcgttgacgatcttctcggcctccccgagcaaccgagggatccatcggagtgtagcaagtacaatgagctgaagcttgagcggtctcgtgctggggagaaggtgaaggctctggagtccatgatgttgacagtgaaggatgtgctgaagaagatcgatgccgagatggaggagatggagtcgagcgtgaggaaccatgacattgcgctgcggaagatcgccactgcgccatggtga
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| Protein seq | MEQKMELVHQRLALLDSSSGSDRDDDIGPRMLMPKEVENEQRTVPGIPQTCNTQNTSNGRTNTTEVPVKGQNKCASYLPKKSSVQAFCGSAMKRAQEIQTKLPAEHPSFVKHMLHSHVVSGFWLGLPAGFCNKYLPKHDTDIVLEDENGNNHNTNYLGGKQGLSAGWRGFAINHDIKVGDVVVFELVHIIRDKNISPTDRAPGLKSFYACKKRKISKEATDNATKPKEDPETTRVSSKVAHDDTQNLVHEAIDGIRFSDSEMSFDDVMSYSNFNIVVDGLVIDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAFLLKRVDDLLGLPEQPRDPSECSKYNELKLERSRAGEKVKALESMMLTVKDVLKKIDAEMEEMESSVRNHDIALRKIATAPW |
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| Function | B3 domain-containing protein Os01g0234100 [UniProtKB/Swiss-Prot:Q0JP99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0009270 | OsLiXu_01g0009270.01 | Chr01 | 7470460 | 7474811 | + | NAM | ||
| CDS seq | atggagcagaagatggaactagtccatcaaaggctcgccttacttgacagcagcagtggcagcgacagggatgacgatattgggccgaggatgctgatgccaaaggaggtggaaaatgagcaaagaacggttcctggcattcctcaaacatgcaatacccagaacactagcaatggacgcactaacaccactgaagtgccagttaagggccaaaataaatgtgcaagttatcttccaaaaaaatctagtgttcaggcgttctgtggatctgctatgaagagagctcaagagattcaaacgaagttaccagcagagcatcctagctttgttaaacatatgttacattcacatgttgtcagcggattttggctgggtctaccagctggcttctgcaacaagtatctcccaaagcatgacactgacattgtgctcgaagatgagaatgggaacaaccataacacaaattacctgggtggtaagcagggactcagtgctggatggagaggttttgcgattaaccatgatatcaaggttggcgatgttgtggtctttgagcttgtgcatataattagagataaaaacatcagcccaactgacagagcacccggtctcaagagtttttacgcctgcaagaaacggaagatatctaaagaagctactgataatgccaccaagcctaaggaggatccagagactactagagtcagtagcaaagtggctcatgatgatacccagaatctagttcatgaagcaatagacggcatcaggttttcagactcggagatgagctttgacgacgtgatgagctacagtaacttcaacatcgtcgtggacggcttggtcattgactgcaagttccccgatcaccagcgcaggacgtactatgagctgtgctgcgcccagaagtcgttcctccacaggcatctgctgaggcagctgagcctcacgctcgtcgtgggggtgatcatggagacgatcaacatcgctgagggcatcagggcctgcggggcgggtacctcctcgcaagaggacttcctgatctggaagaagacgctgcagtcattcgacctgctgggaatgaatgttgcgttcttgctcaagcgcgttgacgatcttctcggcctccccgagcaaccgagggatccatcggagtgtagcaagtacaatgagctgaagcttgagcggtctcgtgctggggagaaggtgaaggctctggagtccatgatgttgacagtgaaggatgtgctgaagaagatcgatgccgagatggaggagatggagtcgagcgtgaggaaccatgacattgcgctgcggaagatcgccactgcgccatggtga
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| Protein seq | MEQKMELVHQRLALLDSSSGSDRDDDIGPRMLMPKEVENEQRTVPGIPQTCNTQNTSNGRTNTTEVPVKGQNKCASYLPKKSSVQAFCGSAMKRAQEIQTKLPAEHPSFVKHMLHSHVVSGFWLGLPAGFCNKYLPKHDTDIVLEDENGNNHNTNYLGGKQGLSAGWRGFAINHDIKVGDVVVFELVHIIRDKNISPTDRAPGLKSFYACKKRKISKEATDNATKPKEDPETTRVSSKVAHDDTQNLVHEAIDGIRFSDSEMSFDDVMSYSNFNIVVDGLVIDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAFLLKRVDDLLGLPEQPRDPSECSKYNELKLERSRAGEKVKALESMMLTVKDVLKKIDAEMEEMESSVRNHDIALRKIATAPW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.110257 | 0.000000 | 0.135020 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0234100 | RBH | 0.865649 | 0.652450 | 1.471551 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13300 | RBH | 0.577526 | 0.394995 | 0.342835 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0234100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009590 | RBH | 0.089950 | 1.242484 | 0.600576 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009230 | RBH | 0.073451 | 0.0 | 1.057227 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009570 | RBH | 0.631312 | 0.000000 | 1.266198 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009110 | RBH | 0.041826 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009150 | RBH | 2.148928 | 6.736945 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0120900 | RBH | 0.3521405 | 0.319767 | 0.184623 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009160 | RBH | 0.056748 | 0.0 | 0.177810 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0120800 | RBH | 0.380575 | 0.1204825 | 3.1924785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008150 | RBH | 0.120821 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009190 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009140 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009070 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009220 | RBH | 0.147662 | 0.0 | 0.239305 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009100 | RBH | 0.418106 | 0.000000 | 0.687492 |
