Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0008130 | OGI:01020630 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:6409505-6413169 | ||||||||
| Gene Symbol | OsDJ-1B, DJ-1B | ||||||||||
| DNA seq | cgtccaccgaaacagcggcggcgacgacgaggcgatcgattcctggacactcgcgccacgccaccccactgtccctgcacgctgcagctacccctactctaccactgccctctccggcagggaagcgaggaagaggcacttaccacgaagtcgccacctcgatttttccggcgaacgacgcaagaataaccccccacccccccccccttacctacggggatagtgatacgatggcgatggcggccgcttccgcctccgccatggcgaggcgggccgcgtcgtggccacggctcctcctcctctcccgcgccttcgccgccgccgccgctgagccgaagcgggtgctcgtgccggtcgcggacggcacggagccggtggaggcggccgccaccgccgacgtgctcaaccgcgccggcgcgcgggtcaccgtcgccacggctgaccccgcgggcgacgaccgtggcctcctggtggaggccgcgttcggggtcaagctcgtcgccgacggccgcgtcgccgacctggaaggcgaggcctttgacctcatcgccctacccgtgcgtccaccctttactcctaaaattacttcctttttttttctcccccttaacaactactccctccgttgctccctccgtttcatattactagtcgatttaacttttgcaaacatttttaagtttgaccaaatttatgtttgaccaaatttatagaaaaatataacaatacgaagcaaacatattatgaaaatatatttaacattacatttaattgaactaatctagtgttccagatattgctaaatttttcattaaatttggtcaaacataaagaaatttgacgaagagAaaaaaaaaaggtcaaagtgacttataatatgaaatggagggagtactaattctgctttactgtgccattgattcgcgctctgtgaggatgttcttgcttaataagagaacttgtatggactagcaaaagtgtgacaattcagtgatgctggttacttggtgtagggaggaatgccgggatcagctaacctcagagattgcaaggtgctggagaagatggtcaagaagcaggcagagcagggtggcctctacgccgccatctgcgccacgccggcggtgacgctggctcactggggcttgctcaaaggcttaaaggttgcaacatggatcatcattcagtcagggtcaattcactgttgcgggggtggttttgttggaaatatgtatcatgttgagagacagatatgatttttgttatttcaggcgacttgctatccatcattcatggagaagttcaccgctgaaattatccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagcaacagcaattgaatatgctctctctttggtggagcaactgtacggcaaagagaagtcggaggaggttgcaggacccttggtaagctatatagcctgtaagccatcacatacttgtttttttttacttctatctgctatgttaggtgatatgatattattaccaggcgatgatctcaaagagatgtttatgggctgttggattttcctaaaattctgcctgcagtgattcaatcaattatctgagtgatttatggtttctaactagttgacataattataatcatactgaaatttagagtaaggcaatatgtcgcaatcttttaggacatttaattgttactgtaatctctcccttcaaatcttaatacaaatgatacgcaatgcttatgcgtgttccctaaaaaaagttacttttgctgagttcactcgaattgttttcgtgcatattgtatcaacatcagctgcttaaattaacattgcctaatgattgtgtggttcttctaattcagtatgttcgtcctcaacctggggttgactatgtcatagatgagttcaattcagttgagtggaaatgcagtggtacacctcaggtatgaaataaaattgaatccttttgttaaaaaatggctccttatatacatttttaaggttgcatgaataggttcttgtcccatggcacaggtcttcgcctgcttaaaaatgttttagctgttgctatgaaattctgtcatttttttttcgccgggctgcaggaaggaatccctggtcagggtttattaagtaagcataaggtgtgatttacatgactcaacaaccatgctagcacttccttttttgggtcttctgcaggttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatcttgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtgacccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaagggaattcgatctgattgtcatgccggtacattccatagctagagttactttttgattgatctggtgttgatcttttgaatacttcgctgatactggtgtcatatatagggtggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaacaggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgagccccatggtttactgaaggtattcccctttatatgtgcatgagtgttaatccctctcggtagtcagctcttttttttttggaacaaattcagtagtcagctccataggcatataaatgattattcctcaaagtagcagattaaccatcaatctgtatttccttttgaaaaaaaactgtcaagctgtattaacatagatgtttccatcattttaggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagagtgcatgtgacagtagggtggttgttgatggtaaccttatcactagcaaagccccaggctccgcgacagagttcgcgctagccattgttgagaagctgtttggtcgagagaaagcggtcagtatagcgaaggagttgatttttatgtgattatacacttgggcatttatgcatcaggtgcctgtcacttgtgagtgatgcttctgtgaataactacttatgctgctttcctaggaatgcataatataagcctatagcagcatgtggcaatccatgtgaatgaggaataaatgtacattatgagtatcatgtgtaaagagtcgtcgttgttagatttcggtgagtttacgctgtcttacagttacctggatagatcttgactcttgtttctgaggcccaaggcttgcagaaaaatggcatggcaatgtttagttctcaaaggcacaggatctgaatcctatcatgtggaactaatacgattttagatagagggactgcattgagaacctgtttgatggatagaaagaaaggaacctgttgagactttggaatctgttgcatcaatcttttcgaatgtttagcaaaatactttctattatgattgtcactttcacatcatcatcaggaggactaatgtgtgattgaaacgacatgagtgtaatgcactaggaaagtgcatctttctgtgtcttgaaaacgaaaattgtgccatgacatagtaattctgtgcctttttttggctctcaatgcattatatgcttctatt
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| CDS seq | atggcgatggcggccgcttccgcctccgccatggcgaggcgggccgcgtcgtggccacggctcctcctcctctcccgcgccttcgccgccgccgccgctgagccgaagcgggtgctcgtgccggtcgcggacggcacggagccggtggaggcggccgccaccgccgacgtgctcaaccgcgccggcgcgcgggtcaccgtcgccacggctgaccccgcgggcgacgaccgtggcctcctggtggaggccgcgttcggggtcaagctcgtcgccgacggccgcgtcgccgacctggaaggcgaggcctttgacctcatcgccctacccggaggaatgccgggatcagctaacctcagagattgcaaggtgctggagaagatggtcaagaagcaggcagagcagggtggcctctacgccgccatctgcgccacgccggcggtgacgctggctcactggggcttgctcaaaggcttaaaggcgacttgctatccatcattcatggagaagttcaccgctgaaattatccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagcaacagcaattgaatatgctctctctttggtggagcaactgtacggcaaagagaagtcggaggaggttgcaggacccttggttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatcttgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtgacccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaagggaattcgatctgattgtcatgccgggtggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaacaggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgagccccatggtttactgaaggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagagtgcatgtgacagtagggtggttgttgatggtaaccttatcactagcaaagccccaggctccgcgacagagttcgcgctagccattgttgagaagctgtttggtcgagagaaagcggtcagtatagcgaaggagttgatttttatgtga
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| Protein seq | MAMAAASASAMARRAASWPRLLLLSRAFAAAAAEPKRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRVADLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLLKGLKATCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALSLVEQLYGKEKSEEVAGPLVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACDSRVVVDGNLITSKAPGSATEFALAIVEKLFGREKAVSIAKELIFM |
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| Function | Protein DJ-1 homolog B [UniProtKB/Swiss-Prot:Q9MAH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0008130 | OsLiXu_01g0008130.01 | Chr01 | 6409583 | 6413169 | + | NAM | ||
| CDS seq | atggcgatggcggccgcttccgcctccgccatggcgaggcgggccgcgtcgtggccacggctcctcctcctctcccgcgccttcgccgccgccgccgctgagccgaagcgggtgctcgtgccggtcgcggacggcacggagccggtggaggcggccgccaccgccgacgtgctcaaccgcgccggcgcgcgggtcaccgtcgccacggctgaccccgcgggcgacgaccgtggcctcctggtggaggccgcgttcggggtcaagctcgtcgccgacggccgcgtcgccgacctggaaggcgaggcctttgacctcatcgccctacccggaggaatgccgggatcagctaacctcagagattgcaaggtgctggagaagatggtcaagaagcaggcagagcagggtggcctctacgccgccatctgcgccacgccggcggtgacgctggctcactggggcttgctcaaaggcttaaaggcgacttgctatccatcattcatggagaagttcaccgctgaaattatccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagcaacagcaattgaatatgctctctctttggtggagcaactgtacggcaaagagaagtcggaggaggttgcaggacccttggttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatcttgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtgacccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaagggaattcgatctgattgtcatgccgggtggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaacaggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgagccccatggtttactgaaggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagagtgcatgtgacagtagggtggttgttgatggtaaccttatcactagcaaagccccaggctccgcgacagagttcgcgctagccattgttgagaagctgtttggtcgagagaaagcggtcagtatagcgaaggagttgatttttatgtga
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| Protein seq | MAMAAASASAMARRAASWPRLLLLSRAFAAAAAEPKRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRVADLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLLKGLKATCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALSLVEQLYGKEKSEEVAGPLVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACDSRVVVDGNLITSKAPGSATEFALAIVEKLFGREKAVSIAKELIFM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0008130 | OsLiXu_01g0008130.02 | Chr01 | 6409505 | 6412759 | + | IsoSeq | ||
| CDS seq | gtccaccgaaacagcggcggcgacgacgaggcgatcgattcctggacactcgcgccacgccaccccactgtccctgcacgctgcagctacccctactctaccactgccctctccggcagggaagcgaggaagaggcacttaccacgaagtcgccacctcgatttttccggcgaacgacgcaagaataaccccccacccccccccccttacctacgg
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| Protein seq | VHRNSGGDDEAIDSWTLAPRHPTVPARCSYPYSTTALSGREARKRHLPRSRHLDFSGERRKNNPPPPPPYLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 6410958 | 6411729 | + | OsLiXu_01g0008130.02 | OsLiXu_01g0008130.01,OsLiXu_01g0008130.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.325674 | 1.582011 | 0.510329 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0217800 | RBH | 0.636228 | 1.352560 | 2.927354 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11880 | RBH | 0.343523 | 0.761146 | 1.004288 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0217800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008460 | RBH | 0.457156 | 6.048090 | 5.160019 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008100 | RBH | 0.122381 | 0.000000 | 1.757857 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008480 | RBH | 0.670693 | 3.615692 | 9.384861 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008000 | RBH | 0.035978 | 0.268380 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008100 | RBH | 0.220269 | 1.649825 | 4.659071 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0105800 | RBH | 9.3395395 | 2.8120805 | 4.69427 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008070 | RBH | 0.027613 | 0.229542 | 0.470655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0105500 | RBH | 2.4954005 | 4.2011455 | 4.261431 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009280 | RBH | 0.064828 | 0.302769 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008100 | RBH | 0.323549 | 2.674979 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008080 | RBH | 0.0 | 4.754712 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008110 | RBH | 0.0 | 0.000000 | 0.546113 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007990 | RBH | 0.0 | 1.768163 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008100 | RBH | 0.075052 | 0.635832 | 1.780577 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007950 | RBH | 0.0 | 17.145403 | 7.683311 |
