Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0005970 | OGI:01015610 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:4388994-4392812 | ||||||||
| Gene Symbol | OsFbox004, OsFbox4, Os_F0387 | ||||||||||
| DNA seq | attgaaaaagacgagggcctagtagccatcgtcgatccccaagtctccgcggcggaggcgctcgcgtcgcgaccccgtcgccgccgccggcgatccgctccagccgaaccccgccgcaccgccgcggtagctgccgtcggcgaggtgcgtctcggcaccggactccaggaatcgtgctgctgctggaacgccgcgcccgctcagccggcggccgggcgtcccgcgtggctcgctggcatcgatcggggatccctcctacgggctcgccgttgcggaggtttcaggggaccggcgcttggttggtaacttggtttcttttgataatttctctggttgtgatgtgtgctctagggtttaagccgagttactgggtcaggatgatatatgttctgcttgttaggttcgatgtattgggtggatctagctacagaagataatcttcgatcttctgaaggggtggtatagagcacgaatcaaccccaactcatcatcatcaatggttctatagtagtgtttggtggttatcctattagtagtcctttataatgattggttggattgattcatgtgctcataattcgtgtatggatcataattttggctcttttcttttctgtaagaatcatgtgaaaatattgttaggcatctctaatataaggtgtttacgcatgggcgcttaaaataattaatcatcggacaattgaaggctcatcgaacatcaggattagtaccaattctctcacaggtggtaagaaaattgattttcttttgctacggacccatccaagtaccttaattggagatagaaagatagaggagaaggtgtctatttgatatttaccgacgagtccattcttcatgtggttcagtctgatatacttctcaggtgccttttaaaaaattgatgctctgcatgtgcattcacatttaccctgtaaacccaaacatgtaagcttggcgattgagattgttactgttctattaactgtttcatgtcatgctgtttcatttatatgttgtttcatttttgtttatgtcactaaggaatgtccacttctcacatttgtcactaattcggttcaacttctcatatatgccatcattccgttatagcacttctcatatttgccactttaaattgctcaaaggtcgaccatcattagcatatgtaagaatttccagcaaaccccaaatatccttcttgctactcacagttgcgcttccacagtgctgtcacccatgcatgcctgctttacagtaggaaggatagaggagtgtgttggagatgtcatatccttgaacactttcagattgtgcttcaggtgacagaaacagagtggccagaaagagcagagctggggtggctcagatgatggcatcgctaactgtggatgtccatgatctagcttcctccttacttcactctttccagcttcccacagctaacactgcatggatcctgcttgcaccatcccaatgctatggctatgttgcatgacaaccagtagtcggttggtggagaacaagcaggatttcaatcttttaaaacatcatgaatagggaaattgacagaatggcaagaatgaaatttggtttaacggaatgatggcacaaatgagaagccgaaagaggcataaataaatgtgcagtggggcagcctatatttcttcctttctatcctttgactaatggattgctcaaaaaaaatttgttatcccctttcccctatttaatcatttcgaccttttggcgcatttactgactctacaaatcaacaggacacgctctttcctcatcaatctgctgatgttttgaaatattggaatgcttctgtcgtcgaatttggttatctacagcatctgaattggttataacttataacttataagtggcatgtctgcgaaggttccaaggtactattatcacttagcagagttactgcagtgcatgcataatcacttggtgaaatacttaaactgtgttttaatttatagccagccagcatggttatagggcattcatgttttcattcatggtttagcactgcttttgtttaatctctacttgtgaagtaagaaagataaaattgttgggtgatataacattgtgatgggttgataaagttgccttcgtcaaacaatacttctttacgtctggcctgtagggcatcatctaacttgcttcacaaatttgaccataaggattaggcttttcataactgaaattggttgtctttcttacttctgttctcttgaccacatcccagaattaaatgaacatggcatctcatacgtttccactaggcatcatatacttatttttagatttacctatcagaaacacatgttatgcaaaatacaggttatgcaacttcataatcctgtttaaacattttcgagtacttgctgcagaaagtttatgtttttactgttttgatgcatgatgtgatcatgccgataatctgacatacagatttgctttaggcgcctagaagctaattccgttgggatggcagattgggctggtcttcagactgatatccttggtgtaattgtaaagaagcttgccgtccctgactatctgagattccgtgctgtatgcacatcttggaaccatctctgtagggatgtattcaactgtccaaggatagacccatggctgatgctccctacaaatgcgcttaatgattctaaatttttgtgtgtacctgaaaggaagaaccaaaccattcgtctcccgagcactgttacaatctttggctccacctggattcctgttggttcttcccatggttggctcatcttttacagcccatctcatggaaccatgcagctggttaatcccattagtggcatgcagttcaatcttcccccaatcggacgaagggccttctccaaggccatgttgcttgacatgaatgacacaaacttcactgttgctgtcatcttacgtgaccagaaaggatataaggtaacgcgtaaaggaagcaacagctggtcatcagtggaatcaaagcatgatctagtggatatcttcaagcacaggagacagctctacaccgttgatatatatggcacagttcagttgtgggcagaaccgccccgttcatggccagatgaagacgccccgcaggtgaatgacccgtatcataacctcattcactatccgcatcaacatggaaagcttaactgtttggtggagtccccagctggtgatctaatgagggtgaagcggcaatcaaatgataagtttgtggtctggattctggacaaggggacattttcctgggagaaggttgataacatcggggactttgcgctgtttgtcagctactacagctcggtctgttaccgggcgaaggatcatctcaacctgaagtcgaattgtgtctacttcattgactcctacagcaacctgtgcgcattcaacctggagaacaggacgaaggagctcgtcgaagctcttgagcccgcccatgcccacggtcatccagagcctcacgctgtccggcgcaggccggaaggacagaggtacatgtggttactcccttcgctgagataaaccaatggaggatgaaagctacggtacacatccccgttgtctctgaacttactacagtatatgtgactgtcgctaatttcataaaagtattgggcatatCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTTGGACAACTCGTGGTTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAG
More
|
||||||||||
| CDS seq | atgtctgcgaaggttccaaggcgcctagaagctaattccgttgggatggcagattgggctggtcttcagactgatatccttggtgtaattgtaaagaagcttgccgtccctgactatctgagattccgtgctgtatgcacatcttggaaccatctctgtagggatgtattcaactgtccaaggatagacccatggctgatgctccctacaaatgcgcttaatgattctaaatttttgtgtgtacctgaaaggaagaaccaaaccattcgtctcccgagcactgttacaatctttggctccacctggattcctgttggttcttcccatggttggctcatcttttacagcccatctcatggaaccatgcagctggttaatcccattagtggcatgcagttcaatcttcccccaatcggacgaagggccttctccaaggccatgttgcttgacatgaatgacacaaacttcactgttgctgtcatcttacgtgaccagaaaggatataaggtaacgcgtaaaggaagcaacagctggtcatcagtggaatcaaagcatgatctagtggatatcttcaagcacaggagacagctctacaccgttgatatatatggcacagttcagttgtgggcagaaccgccccgttcatggccagatgaagacgccccgcaggtgaatgacccgtatcataacctcattcactatccgcatcaacatggaaagcttaactgtttggtggagtccccagctggtgatctaatgagggtgaagcggcaatcaaatgataagtttgtggtctggattctggacaaggggacattttcctgggagaaggttgataacatcggggactttgcgctgtttgtcagctactacagctcggtctgttaccgggcgaaggatcatctcaacctgaagtcgaattgtgtctacttcattgactcctacagcaacctgtgcgcattcaacctggagaacaggacgaaggagctcgtcgaagctcttgagcccgcccatgcccacggtcatccagagcctcacgctgtccggcgcaggccggaaggacagaggtacatgtggttactcccttcgctgagataa
More
|
||||||||||
| Protein seq | MSAKVPRRLEANSVGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDVFNCPRIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHGTMQLVNPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVTRKGSNSWSSVESKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRSWPDEDAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKDHLNLKSNCVYFIDSYSNLCAFNLENRTKELVEALEPAHAHGHPEPHAVRRRPEGQRYMWLLPSLR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0005970 | OsLiXu_01g0005970.01 | Chr01 | 4388994 | 4392812 | + | NAM | ||
| CDS seq | atgtctgcgaaggttccaaggcgcctagaagctaattccgttgggatggcagattgggctggtcttcagactgatatccttggtgtaattgtaaagaagcttgccgtccctgactatctgagattccgtgctgtatgcacatcttggaaccatctctgtagggatgtattcaactgtccaaggatagacccatggctgatgctccctacaaatgcgcttaatgattctaaatttttgtgtgtacctgaaaggaagaaccaaaccattcgtctcccgagcactgttacaatctttggctccacctggattcctgttggttcttcccatggttggctcatcttttacagcccatctcatggaaccatgcagctggttaatcccattagtggcatgcagttcaatcttcccccaatcggacgaagggccttctccaaggccatgttgcttgacatgaatgacacaaacttcactgttgctgtcatcttacgtgaccagaaaggatataaggtaacgcgtaaaggaagcaacagctggtcatcagtggaatcaaagcatgatctagtggatatcttcaagcacaggagacagctctacaccgttgatatatatggcacagttcagttgtgggcagaaccgccccgttcatggccagatgaagacgccccgcaggtgaatgacccgtatcataacctcattcactatccgcatcaacatggaaagcttaactgtttggtggagtccccagctggtgatctaatgagggtgaagcggcaatcaaatgataagtttgtggtctggattctggacaaggggacattttcctgggagaaggttgataacatcggggactttgcgctgtttgtcagctactacagctcggtctgttaccgggcgaaggatcatctcaacctgaagtcgaattgtgtctacttcattgactcctacagcaacctgtgcgcattcaacctggagaacaggacgaaggagctcgtcgaagctcttgagcccgcccatgcccacggtcatccagagcctcacgctgtccggcgcaggccggaaggacagaggtacatgtggttactcccttcgctgagataa
More
|
|||||||
| Protein seq | MSAKVPRRLEANSVGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDVFNCPRIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHGTMQLVNPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVTRKGSNSWSSVESKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRSWPDEDAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKDHLNLKSNCVYFIDSYSNLCAFNLENRTKELVEALEPAHAHGHPEPHAVRRRPEGQRYMWLLPSLR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.161926 | 1.951866 | 2.057173 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0183800 | RBH | 2.870902 | 2.649828 | 6.018193 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08830 | RBH | 1.922328 | 1.780446 | 1.406194 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0183800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006270 | RBH | 0.977041 | 24.350927 | 7.417791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005930 | RBH | 0.541895 | 3.022197 | 4.031730 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006250 | RBH | 4.067425 | 19.711418 | 10.789702 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005820 | RBH | 0.421022 | 0.426836 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006010 | RBH | 9.380948 | 11.998079 | 25.973982 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005960 | RBH | 0.239674 | 1.132884 | 1.882217 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005760 | RBH | 0.311515 | 0.455493 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005970 | RBH | 1.086201 | 12.929502 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006020 | RBH | 7.933696 | 26.993950 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005930 | RBH | 0.750326 | 6.374151 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005980 | RBH | 1.090479 | 3.654814 | 5.875599 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005860 | RBH | 3.700788 | 38.210999 | 15.216522 |
