Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0005540 | OGI:01014810 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:4064133-4067917 | ||||||||
| Gene Symbol | OsSTA5 | ||||||||||
| DNA seq | ggggagaagaaagcgtaagaaaaataaaaggagaaaaaggaatagagaaattggggaagagagctacctcgaatcgaagctgcgatctccacctggtatggttgatttttctccggattcctctcgctccgttggattggggattgattgattgattggttgattgcttgcttcggtgagttccaattcagtggagcgtaggctaccgaatccaccgatttcgcttgcgttcttggttgaactgttcgatccccacgagctgctgccatgttcttgctgatttttttttttgaaacctatgttcttgctgatttgggttcttggccaatgggataggatcatagaaatgcttgtgggatggggttctgtttgattttctttctctccccaatgctgtctgtccacattgttttcttgtttcttcaggtgaaataggagaattgatgaattgctgagatttggtgattagagggacctttgctgctgaggcattgaggtatggtgttcattccttctccatgctgagtgcttcatttgtgtattagctgacatcaccgtaaggttcttgagttgcaaataatggatggctgctattgtgttgcatttgcattggtctactaatccaattttaactaggttgctttctaatcgggggcaatcgagtccttaccactggaattgttttaatggacttgttgaattactcctgaaagattgatctgcagtcaagttctaagattgcaggaatatgttgatgaaataattgattctgtaatataagtaacttgtaatgtaaaatgcaaaccgagaatagatgattggtctaacctaagggaaaggctataatcattttagaatacatgcaatcaaatctcgaaatcttttaaatcactaatatattaagaaaacattaatattttatatgtaaaaatgacattgttagatttatcatgaaaataatttcatttagttatataattattatagatatattattagagaaggcaatgatcaaacatgtcatactatttcaatgccctacataacaagtagtaaataagaattaagagggagtattttttaaattcaggctatgatcttcccttctagtctaatcctgtccaacaatatatgatgtcttaccttgcacacatgctttctttgtttaggcaggcagttaattgacaccttgtttactttcctttccttaaggtacactaaaagcaagggtgtgaaaaaggcaacttcaattgaaaacatctacatatctaggaatgtcctgaagctaatgtgtggagtaaacttctagtttattgctgtccgtcctgttgggccacagtgcgaaggtcaggcagatagtcatccattactgatgggggactctggaaatgccagtcatcgtgatcacacgatcgacatactgagaaatgatgcaactttcccatcaacatctcatcaggataatcataataacttggatgagttgcaccaaactagagggcctctaaatgatgttcctcatgtcccagaaagttctgctagtgcaactcctgcatctatctcccgaaacgcatcttttgcaagaagagatcaaggacaccgtcaaccaaatcctttgaattctggcttctggatctcaattgagcttattgtaagtttaagccagattatagcagctattactgtcctgtcagtatcaaggaacgagcatcctcatgctcctttggctcagtggcttattggttatacgataggttgtgttgctactcttcctcacctttattggcgatttctccaccgcaatcggcagaacacagagcaagaatcaacaaatcaggtttcatctgaaagggacgtatatgagcctaattcttatgtagtagtttcgtctgctcatggatcagaagttgtggacagtggtaataatggtggagtagcaaggattgcaagtccaaggtagcattttctttcttgggaatttatctttagtatatttgactgcactacctctcactctcaggctcataagtttgtttaagtggaaccatcaaccaccgatatgctatggcagagcaaccgcctatatttgagaagatctgttttttgttatcaaatttcatatgatctttagcaatttattttactatgatgtctttgcacctgctgtctacctggtagccattgaaaacagttgggctttcagtatttctaacactttaggtcacttatctggatactagaagattcaacatcatatgaaaccatctgagttctttcttctaactaacatttggattcatttatgaggtaacaatgccttctgtgctttatagggtctacgcattggttgcgtgcttcaaattggctctggattgtttctttgctgtgtggtttgttgttgggaatgtgtggatattcgggggccgtacttctctccatgacgctcctaacttgtacaggtctgtgatgctaagcagccatagacaatgtgttccttgcttctcaacttagatgtttactcatttgttagtgatcatttttcaggctgtgcatagtattccttgcattcggcttcatcggctatgccctgcctttcatcctctgtacaatgatatgctgctgcctaccctgcattatctccatgatgggcatccacgaggatttggattttaacagaggcgctactgcagaagcaatcgatgccttggtggcatacaagttccaatcgaaaaagtttcaagatggagaagcgggagaagataatggtggagtattggcagctggaacagacaaagagcgaactatttctgcagaagacgctgtgagtgtcctcctgcattcctgtttacactttaccaaacctgggatatactatgctcatgtttacacgtctgtagcatgtttccacatatgcaattgacacctatggatctctgggctctgcaggtatgctgcatctgcttgtcaaagttctcaaacaacgaagatctacgggagcttccctgcaatcatgttttccacttggaatgcgtcgataaatggctcaagataaacgcactgtgccctctttgcaaggctgacttaggcggctcgacgaatgctccggactcgagctccaggagcagccatgacagcaacaacagcagagtcaggaacgacgtcgagtcacaacagtagctgctctcatgccctttcccatgagcatggggatggaacacattcttgacaatctacaaattggcatgcaacttctcaagtccctttttttttcagacagacttgaatagagcatttgcctacactgctctctggtgttaacccagaaactcctatgaggctgaggctatggctatgagttgctgcctgcagtttgttctgaactgaagttgcctgtaaggctgtaacagattatagatggtgttggaatagttatcatgatgatcacctgagttgagcatattaggttgttgaggttaaccttcaaccggggaggttcaatgtaattatctccttgtttaggaaaaaatcccctcccctttgtatctgctcccttgtatagaaaacaaccatctccattgtatatcagatcaattttgcctgcattttgtaaattcagttagtaggcagagatctcccagcactcatcaagtgcttgagcaagtacagattagcagttgagtttattctactgtaatgcaacacttatagatgatattaccatgacataatcatttgagcccacataatcattggatgagaatggaagaacagaagagtaaactccc
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| CDS seq | atgggggactctggaaatgccagtcatcgtgatcacacgatcgacatactgagaaatgatgcaactttcccatcaacatctcatcaggataatcataataacttggatgagttgcaccaaactagagggcctctaaatgatgttcctcatgtcccagaaagttctgctagtgcaactcctgcatctatctcccgaaacgcatcttttgcaagaagagatcaaggacaccgtcaaccaaatcctttgaattctggcttctggatctcaattgagcttattgtaagtttaagccagattatagcagctattactgtcctgtcagtatcaaggaacgagcatcctcatgctcctttggctcagtggcttattggttatacgataggttgtgttgctactcttcctcacctttattggcgatttctccaccgcaatcggcagaacacagagcaagaatcaacaaatcaggtttcatctgaaagggacgtatatgagcctaattcttatgtagtagtttcgtctgctcatggatcagaagttgtggacagtggtaataatggtggagtagcaaggattgcaagtccaagggtctacgcattggttgcgtgcttcaaattggctctggattgtttctttgctgtgtggtttgttgttgggaatgtgtggatattcgggggccgtacttctctccatgacgctcctaacttgtacaggctgtgcatagtattccttgcattcggcttcatcggctatgccctgcctttcatcctctgtacaatgatatgctgctgcctaccctgcattatctccatgatgggcatccacgaggatttggattttaacagaggcgctactgcagaagcaatcgatgccttggtggcatacaagttccaatcgaaaaagtttcaagatggagaagcgggagaagataatggtggagtattggcagctggaacagacaaagagcgaactatttctgcagaagacgctgtatgctgcatctgcttgtcaaagttctcaaacaacgaagatctacgggagcttccctgcaatcatgttttccacttggaatgcgtcgataaatggctcaagataaacgcactgtgccctctttgcaaggctgacttaggcggctcgacgaatgctccggactcgagctccaggagcagccatgacagcaacaacagcagagtcaggaacgacgtcgagtcacaacagtag
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| Protein seq | MGDSGNASHRDHTIDILRNDATFPSTSHQDNHNNLDELHQTRGPLNDVPHVPESSASATPASISRNASFARRDQGHRQPNPLNSGFWISIELIVSLSQIIAAITVLSVSRNEHPHAPLAQWLIGYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERDVYEPNSYVVVSSAHGSEVVDSGNNGGVARIASPRVYALVACFKLALDCFFAVWFVVGNVWIFGGRTSLHDAPNLYRLCIVFLAFGFIGYALPFILCTMICCCLPCIISMMGIHEDLDFNRGATAEAIDALVAYKFQSKKFQDGEAGEDNGGVLAAGTDKERTISAEDAVCCICLSKFSNNEDLRELPCNHVFHLECVDKWLKINALCPLCKADLGGSTNAPDSSSRSSHDSNNSRVRNDVESQQ |
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| Function | E3 ubiquitin-protein ligase At4g11680 [UniProtKB/Swiss-Prot:Q93Z92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0005540 | OsLiXu_01g0005540.01 | Chr01 | 4064133 | 4067917 | + | NAM | ||
| CDS seq | atgggggactctggaaatgccagtcatcgtgatcacacgatcgacatactgagaaatgatgcaactttcccatcaacatctcatcaggataatcataataacttggatgagttgcaccaaactagagggcctctaaatgatgttcctcatgtcccagaaagttctgctagtgcaactcctgcatctatctcccgaaacgcatcttttgcaagaagagatcaaggacaccgtcaaccaaatcctttgaattctggcttctggatctcaattgagcttattgtaagtttaagccagattatagcagctattactgtcctgtcagtatcaaggaacgagcatcctcatgctcctttggctcagtggcttattggttatacgataggttgtgttgctactcttcctcacctttattggcgatttctccaccgcaatcggcagaacacagagcaagaatcaacaaatcaggtttcatctgaaagggacgtatatgagcctaattcttatgtagtagtttcgtctgctcatggatcagaagttgtggacagtggtaataatggtggagtagcaaggattgcaagtccaagggtctacgcattggttgcgtgcttcaaattggctctggattgtttctttgctgtgtggtttgttgttgggaatgtgtggatattcgggggccgtacttctctccatgacgctcctaacttgtacaggctgtgcatagtattccttgcattcggcttcatcggctatgccctgcctttcatcctctgtacaatgatatgctgctgcctaccctgcattatctccatgatgggcatccacgaggatttggattttaacagaggcgctactgcagaagcaatcgatgccttggtggcatacaagttccaatcgaaaaagtttcaagatggagaagcgggagaagataatggtggagtattggcagctggaacagacaaagagcgaactatttctgcagaagacgctgtatgctgcatctgcttgtcaaagttctcaaacaacgaagatctacgggagcttccctgcaatcatgttttccacttggaatgcgtcgataaatggctcaagataaacgcactgtgccctctttgcaaggctgacttaggcggctcgacgaatgctccggactcgagctccaggagcagccatgacagcaacaacagcagagtcaggaacgacgtcgagtcacaacagtag
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| Protein seq | MGDSGNASHRDHTIDILRNDATFPSTSHQDNHNNLDELHQTRGPLNDVPHVPESSASATPASISRNASFARRDQGHRQPNPLNSGFWISIELIVSLSQIIAAITVLSVSRNEHPHAPLAQWLIGYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERDVYEPNSYVVVSSAHGSEVVDSGNNGGVARIASPRVYALVACFKLALDCFFAVWFVVGNVWIFGGRTSLHDAPNLYRLCIVFLAFGFIGYALPFILCTMICCCLPCIISMMGIHEDLDFNRGATAEAIDALVAYKFQSKKFQDGEAGEDNGGVLAAGTDKERTISAEDAVCCICLSKFSNNEDLRELPCNHVFHLECVDKWLKINALCPLCKADLGGSTNAPDSSSRSSHDSNNSRVRNDVESQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.433042 | 0.107025 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0178700 | RBH | 0.347783 | 0.594434 | 2.011536 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08340 | RBH | 0.229735 | 0.390534 | 0.505800 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0178700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005760 | RBH | 0.000000 | 1.064964 | 1.404898 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005450 | RBH | 0.000000 | 0.0 | 1.307499 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005730 | RBH | 0.096689 | 3.174643 | 3.223844 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005370 | RBH | 0.000000 | 0.027423 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005590 | RBH | 3.418401 | 0.0 | 1.543162 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0071800 | RBH | 1.071893 | 7.062957 | 1.4382075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005540 | RBH | 0.0 | 0.074322 | 1.576605 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0072000 | RBH | 1.2799835 | 6.232306 | 3.587587 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005350 | RBH | 0.076774 | 0.112792 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005540 | RBH | 0.0 | 1.925352 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005600 | RBH | 0.000000 | 4.840644 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005410 | RBH | 1.107337 | 1.612207 | 0.854647 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005520 | RBH | 0.054707 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005560 | RBH | 0.072889 | 0.0 | 0.654403 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005440 | RBH | 0.0 | 7.328525 | 4.847012 |
