Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0005440 | OGI:01014580 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:3976906-3979433 | ||||||||
| Gene Symbol | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1 | ||||||||||
| DNA seq | gcgtgagatcgaggtagctagtagctatagcttatgcgtggacgtcggcggcggcggcgacgtcgtcgtgttcgtcggcggcggcggcggcgtcggtggagaccatcttgagggcggagccgccggtggcgaaggccttcttgcggacggccatgtactccggccacgtgacagcgcggtaggcggggctccggccggccggcacggcctccggcagcggcgccacctcggcgtccggcggcgggccgaggaagtagccgagcgagacccggtcgcggtcgcggttcacgacggcgcggtggtagacgctgtggaagcggccgttggtgaggatgtggaagaggtcgccgacgttgacgacgaaggcccccgccaccgccggcaccgccacccatcggtcgggccctcgccggaacagctgcagccccgggacgaggctctggagcacgaaggtgaagaagcccgagtccgtgtgcgcgatgagccccagcgctcgccgcggctccgggcacctcgggtaccagttgaggtgcaccgtcgccgtcatcctctcgccgatcctcctctccgcctcgactccggcgacctcctcgccggtgagccccagcgccctcaagaacaacctcagcaactcgtcggctagccgccgcatctccttgtgaaactcctccatcacgtcactgcgtatattatacgtagatcaatacgtagatatatacgtagaggtagatatatacgtagagtgtatgtgcatggaatgcatgggagagtatatatatatgtatatataccagaagaggaggtagtcgtcgccggacttgggccagaggcggcggagctcggagcggagggaggaaggggagaaggtgtagccctcggaccacatgagcttggagaagaaggaggagatgggcggcgagccgtagccgcagggctcgccggggccgcggacggcgcgcatcttctccgacgccggcagggagaacacgcgggcgacgcgctcctcgacgcgcgacagcagcgccgccggcacgccgtgcccgaccagaaggaacgcgccccactgctccgccgcccgcgccacccgcgccgccgcgtcgcccgccctgacgtccaccaccggcaccgcgtcctcgccgccgccgccgccgccgtccaccaccgggtggtcgtccagccccggccacgcgtgcgtctccggcacccgcctcgccgcccggaagtcgaagcagagcgggttcttcaagtgcgacggcgtcggcatcgcgacgacgacgacgatgaccagagaggaacacactcgcgcgctcgctcgtctcgtctggcagaaagccagtaacaataacaaacactaattttttctctctatataaattttttctatgactttacaatagtggaatgagtagtaaagtgagacgagtgtaagaactggacaagtacaagggagaggtatatatagggagagaagtttggagcgtagtggaagaaaaaaaaaagagagaattaattggtgaataaatcagtgatgaagaattgaaatggatcattaattaatagatttggagaggaaaaaatgtggtgattgggacagagggtttggagtgatgtggagcacacaaggccaccagcttagctacacaacacaaatctagctagtatgctcatcaccactccctggctggctagtggcactgccacccaattaataacacacatattcatacaaattaagttatgttatagtaaagtaaaatcacaatgtgaaataagcaccagagtaatttttaattatcacattacataaaacagattaggtaattaaacataggaatttcacaggaacagtagcgtcctccgttgccgtggtgtttttttttaattcgtctgtctgctttagaaccaaatattctcacatgcagccacttctaattaattatgattaccgtataattctcatacacgtcgaatttcattcgatattttactttcagtagcaagatcttcatgctagttcccatatacagtactacatccgtttcaggttataagacgttttgactttagtcaaaatcaaactgctttaagtttgaccaattttatagaaaaagtagtaatatttttaactcaagacaaatttattatgaaaatatatttaattaactaatttaatattataaatattattatattatctataaaattagtcaaacttgaaacaacatgactttgactaaagtcaaaatattttataatctgaaacgaaaggattacgtcctaatttgtcgagcacggtacaattaccaagattcaaaccgtgttatctacttcttctttttcaatatatttactaagaagactaaccttatattacaactacaaaaataaacaaaacaaaacaaatataaacagtaatttgtttagaaaacagcacacagattctagaacagcaaacaagagaaaagacagcactagtctgcagccacgagtaaaaacagaggacagaggccatgatcatcatcatccat
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| CDS seq | atggatgatgatgatcatggcctctgtcctctgtttttactcgtggctgcagactattgtaatataaggcgggtgccggagacgcacgcgtggccggggctggacgaccacccggtggtggacggcggcggcggcggcggcgaggacgcggtgccggtggtggacgtcagggcgggcgacgcggcggcgcgggtggcgcgggcggcggagcagtggggcgcgttccttctggtcgggcacggcgtgccggcggcgctgctgtcgcgcgtcgaggagcgcgtcgcccgcgtgttctccctgccggcgtcggagaagatgcgcgccgtccgcggccccggcgagccctgcggctacggctcgccgcccatctcctccttcttctccaagctcatggcgctggggctcaccggcgaggaggtcgccggagtcgaggcggagaggaggatcggcgagaggatgacggcgacggtgcacctcaactggtacccgaggtgcccggagccgcggcgagcgctggggctcatcgcgcacacggactcgggcttcttcaccttcgtgctccagagcctcgtcccggggctgcagctgttccggcgagggcccgaccgatgggtggcggtgccggcggtggcgggggccttcgtcgtcaacgtcggcgacctcttccacatcctcaccaacggccgcttccacagcgtctaccaccgcgccgtcgtgaaccgcgaccgcgaccgggtctcgctcggctacttcctcggcccgccgccggacgccgaggtggcgccgctgccggaggccgtgccggccggccggagccccgcctaccgcgctgtcacgtggccggagtacatggccgtccgcaagaaggccttcgccaccggcggctccgccctcaagatggtctccaccgacgccgccgccgccgccgacgaacacgacgacgtcgccgccgccgccgacgtccacgcataa
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| Protein seq | MDDDDHGLCPLFLLVAADYCNIRRVPETHAWPGLDDHPVVDGGGGGGEDAVPVVDVRAGDAAARVARAAEQWGAFLLVGHGVPAALLSRVEERVARVFSLPASEKMRAVRGPGEPCGYGSPPISSFFSKLMALGLTGEEVAGVEAERRIGERMTATVHLNWYPRCPEPRRALGLIAHTDSGFFTFVLQSLVPGLQLFRRGPDRWVAVPAVAGAFVVNVGDLFHILTNGRFHSVYHRAVVNRDRDRVSLGYFLGPPPDAEVAPLPEAVPAGRSPAYRAVTWPEYMAVRKKAFATGGSALKMVSTDAAAAADEHDDVAAAADVHA |
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| Function | Gibberellin 3-beta-dioxygenase 2 [UniProtKB/Swiss-Prot:Q9FU53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0005440 | OsLiXu_01g0005440.01 | Chr01 | 3976937 | 3979433 | - | NAM | ||
| CDS seq | atggatgatgatgatcatggcctctgtcctctgtttttactcgtggctgcagactattgtaatataaggcgggtgccggagacgcacgcgtggccggggctggacgaccacccggtggtggacggcggcggcggcggcggcgaggacgcggtgccggtggtggacgtcagggcgggcgacgcggcggcgcgggtggcgcgggcggcggagcagtggggcgcgttccttctggtcgggcacggcgtgccggcggcgctgctgtcgcgcgtcgaggagcgcgtcgcccgcgtgttctccctgccggcgtcggagaagatgcgcgccgtccgcggccccggcgagccctgcggctacggctcgccgcccatctcctccttcttctccaagctcatggcgctggggctcaccggcgaggaggtcgccggagtcgaggcggagaggaggatcggcgagaggatgacggcgacggtgcacctcaactggtacccgaggtgcccggagccgcggcgagcgctggggctcatcgcgcacacggactcgggcttcttcaccttcgtgctccagagcctcgtcccggggctgcagctgttccggcgagggcccgaccgatgggtggcggtgccggcggtggcgggggccttcgtcgtcaacgtcggcgacctcttccacatcctcaccaacggccgcttccacagcgtctaccaccgcgccgtcgtgaaccgcgaccgcgaccgggtctcgctcggctacttcctcggcccgccgccggacgccgaggtggcgccgctgccggaggccgtgccggccggccggagccccgcctaccgcgctgtcacgtggccggagtacatggccgtccgcaagaaggccttcgccaccggcggctccgccctcaagatggtctccaccgacgccgccgccgccgccgacgaacacgacgacgtcgccgccgccgccgacgtccacgcataa
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| Protein seq | MDDDDHGLCPLFLLVAADYCNIRRVPETHAWPGLDDHPVVDGGGGGGEDAVPVVDVRAGDAAARVARAAEQWGAFLLVGHGVPAALLSRVEERVARVFSLPASEKMRAVRGPGEPCGYGSPPISSFFSKLMALGLTGEEVAGVEAERRIGERMTATVHLNWYPRCPEPRRALGLIAHTDSGFFTFVLQSLVPGLQLFRRGPDRWVAVPAVAGAFVVNVGDLFHILTNGRFHSVYHRAVVNRDRDRVSLGYFLGPPPDAEVAPLPEAVPAGRSPAYRAVTWPEYMAVRKKAFATGGSALKMVSTDAAAAADEHDDVAAAADVHA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0005440 | OsLiXu_01g0005440.02 | Chr01 | 3976906 | 3977107 | - | IsoSeq | ||
| CDS seq | ggccggccggagccccgcctaccgcgctgtcacgtggccggagtacatggccgtccgcaagaaggccttcgccaccggcggctccgccctcaagatggtctccaccgacgccgccgccgccgccgacgaacacgacgacgtcgccgccgccgccgacgtccacgcataagctatagc |
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| Protein seq | GRPEPRLPRCHVAGVHGRPQEGLRHRRLRPQDGLHRRRRRRRRTRRRRRRRRRPRISYS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.540036 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0177400 | RBH | 0.0 | 0.0 | 0.230145 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08220 | RBH | 0.0 | 0.0 | 0.159311 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0177400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005670 | RBH | 0.0 | 1.978397 | 1.153067 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005360 | RBH | 0.0 | 0.553542 | 0.821096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005620 | RBH | 0.0 | 6.380771 | 1.139477 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005260 | RBH | 0.0 | 0.106700 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005490 | RBH | 1.247762 | 28.431467 | 8.499867 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0070600 | RBH | 1.5695495 | 8.2858965 | 2.0798725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005440 | RBH | 0.0 | 0.364700 | 0.176626 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0070900 | RBH | 8.1582975 | 0.398554 | 4.8164025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005250 | RBH | 0.000000 | 0.158947 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005440 | RBH | 0.0 | 4.313562 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005500 | RBH | 0.0 | 26.500540 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0002780 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005420 | RBH | 0.0 | 2.231214 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005460 | RBH | 0.0 | 0.731522 | 0.863602 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005340 | RBH | 0.0 | 2.432723 | 2.206273 |
