Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0003640 | OGI:01008970 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:2845064-2848422 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggttaaatacggtgctcttttcaagtgcttgtcactccacacttgggtaccattgcaaccaccatcacaccatggcgatggctcgtgctagcttcctgctgctgctgtccatcttcttgcacttcatggcagtgcgaggagcagacggagaagacgccgcagcgttgctcgctttcaaggccgcggcggtgggcaacggtggtggcaacggcgtgcttgcgtcgtggaacggcagcgccgggccgtgcagctgggagggcgtggcgtgtggccggcacgggcgggtggtggcgcttagcctgcccgggcatgatctctccgggaccctgtcgccggccgtcggcaacctgacatcgttgcggaaactcaacctgagtttgaactggcttcacggtgccatccccgcgagcctcgggcgcctgcgtcgcctcagaacactcgttctgagcttcaacaccttctccggcgaggtccccggcaacctgacctcctgcaccagcttggaaaagctggtcctcggcagcaacaagctcaccgggaacatacccgctgagctcggcaacacgctgacacggctccaggtgctaggcctcgacaacaacagcttcgtcggccattggccggcttcactggccaacctgacgtccctgggattactcaacctcaggatgaacagtctcgagggcacaatacctcctgaattcggcagcaacatgccgcgccttctctccatagacatctgctccaacaacctgagcggtgcactcccgtcttccctgtacaatctgtcgtcgctaaaggtctttgacgcaggaaacaactatctgaatggaaccattgctgctgatatcggtgaaaagctccctagtctgcagtattttggagtgttcaacaaccggttcagcggggaaattccttcctcgttcaccaatctcactaacctcacaagtctgcagctgtcagaaaatggatttagtggctttgtgccacgtgatctagggaggttgaatgctctgcagaatctgcaactagctgttaatatgcttgaagcaggggacatgaaggggtgggaatttgttgattcattggcgaactgcagtaagctagtgactttagctctcagtaacaataatttcacagggcagttccctatttcgattgtaaacctctcgacgactctccaaacactttacttgggtggcagtaggatttctggaagcatcccctctgatttcggtaatttggttggtctaagatcattatacctgtttagtactgacatatcaggtgtaattccagagagcattgggaagctggaaaacttgactacgctatacctgaattacaatagcttgtctggccatgtaccgtcttctgtgggaaacctcaccaatctgatgaagctattcatgcaaggcaacaacttggaaggaccaatcccggcgaatcttggtaagctggaaagcctgaatgttcttgatttatcaagaaatcacttcaatggttcgattccaaaggaaatattggagctaccttccatttcacagtacttgaatttatcatacaactccctctctggaccccttccttctgaagttgggagtttgactagcctcaacgagttggttctgtcaggaaaccaattgtctggccagataccaagtagtaaaaaattgcatagtgctcactgtactgttattggacagtaactcgttccaaggaactatacctgtgtttctggaggacattaaggggctccgtgtacttaacctaaccatgaacaagttttctggtgtgattcctgatgcccttggtagcatccacaacctgcaagagttgtatctagcgtataacaacttgtctgggcctatccctgcagtgctgcagaatttgacatcgttatcaatgctggatctatccttcaatgatcttcaaggtgaagtgccaaaagaaggtatttttaagaacttatcttacttgtctttagctggaaacagtgagctttgtgggggaatatctcatcttaacttacctccatgctccacgcatgctgttagaaagataagcaaagggtggttaaggtctcttaaaatagctctggcatcaatagctgtggtcttgttcttagctctagttatggtgattattatgttaattcgtcatagaaagcctgtacataggaagaagggccagtccctaaccccagttgtggaggaacaatttgaaagagtttcttaccaggaattgtcaaatggaaccaagggattttcacagaacagtttgattggaaaaggaagctatggtgtagtctataaatgcgctttgtttgatgaggaaattattgtcgctgtaaaggtgtttaaccttgaacagtctggatctactagaagttttgtggcagaatgcgaggcactgagaagtgtgcgccaccgttgtctcctaaagatcatcacttgctgctcaagcataaataaccaaggtcaagatttcaaggcactagtttttgagtttatgcccaatggcagcttaaatggttggcttcatccaaaatctgatatgcccattgttgacaatactttgagcctaactcaaaggctggacattgctgttgatattgtggatgctctggaatatcttcatatccactgccagccgccgatcgttcattgtgatctcaagccaagcaacatccttcttgcagaagacatgagtgcccgagttggagatttcggcatatcaagaatcctaactgaaagcgcgagcaaaacacagcaaaattcaagcaacacaatcggaataagaggctccattggctatgttgctccaggtaactgaattgttgtgctttgtttctttgctttttacctcctagttcttacacaaatttaacattctggtgaatctaatgaactcctgcaaaatatttgtagagtatggggaaggctctgcggtctcaactcttggcgatgtttatagtctgggcatattgctgcttgagatgtttacaggaatgagcccaacagacgatatgttcagagattcattggacctgcacagtttctcagaggctgctcatcctgacagaatcctggagatagccgatccgacgctctgggtgcatgtagacgccgaggatagcatcacaaggagcagaatgcaggagtgtttgatttcagtcattggcctcggcttgtcctgctcaaagcatcaacccagagagcgaatgccaatacaagatgcagccctgaagatgcatgcgatcagagacgacgcttaccagatgttttctggctctctttcagtggacatggaagaggagacgaaacagattagcagcgatttgaagcaacagtga
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| CDS seq | atggggttaaatacggtgctcttttcaagtgcttgtcactccacacttgggtaccattgcaaccaccatcacaccatggcgatggctcgtgctagcttcctgctgctgctgtccatcttcttgcacttcatggcagtgcgaggagcagacggagaagacgccgcagcgttgctcgctttcaaggccgcggcggtgggcaacggtggtggcaacggcgtgcttgcgtcgtggaacggcagcgccgggccgtgcagctgggagggcgtggcgtgtggccggcacgggcgggtggtggcgcttagcctgcccgggcatgatctctccgggaccctgtcgccggccgtcggcaacctgacatcgttgcggaaactcaacctgagtttgaactggcttcacggtgccatccccgcgagcctcgggcgcctgcgtcgcctcagaacactcgttctgagcttcaacaccttctccggcgaggtccccggcaacctgacctcctgcaccagcttggaaaagctggtcctcggcagcaacaagctcaccgggaacatacccgctgagctcggcaacacgctgacacggctccaggtgctaggcctcgacaacaacagcttcgtcggccattggccggcttcactggccaacctgacgtccctgggattactcaacctcaggatgaacagtctcgagggcacaatacctcctgaattcggcagcaacatgccgcgccttctctccatagacatctgctccaacaacctgagcggtgcactcccgtcttccctgtacaatctgtcgtcgctaaaggtctttgacgcaggaaacaactatctgaatggaaccattgctgctgatatcggtgaaaagctccctagtctgcagtattttggagtgttcaacaaccggttcagcggggaaattccttcctcgttcaccaatctcactaacctcacaagtctgcagctgtcagaaaatggatttagtggctttgtgccacgtgatctagggaggttgaatgctctgcagaatctgcaactagctgttaatatgcttgaagcaggggacatgaaggggtgggaatttgttgattcattggcgaactgcagtaagctagtgactttagctctcagtaacaataatttcacagggcagttccctatttcgattgtaaacctctcgacgactctccaaacactttacttgggtggcagtaggatttctggaagcatcccctctgatttcggtaatttggttggtctaagatcattatacctgtttagtactgacatatcaggtgtaattccagagagcattgggaagctggaaaacttgactacgctatacctgaattacaatagcttgtctggccatgtaccgtcttctgtgggaaacctcaccaatctgatgaagctattcatgcaaggcaacaacttggaaggaccaatcccggcgaatcttggtaagctggaaagcctgaatgttcttgatttatcaagaaatcacttcaatggttcgattccaaaggaaatattggagctaccttccatttcacagtacttgaatttatcatacaactccctctctggaccccttccttctgaagttgggagtttgactagcctcaacgagttggttctgtcaggaaaccaatttaactcgttccaaggaactatacctgtgtttctggaggacattaaggggctccgtgtacttaacctaaccatgaacaagttttctggtgtgattcctgatgcccttggtagcatccacaacctgcaagagttgtatctagcgtataacaacttgtctgggcctatccctgcagtgctgcagaatttgacatcgttatcaatgctggatctatccttcaatgatcttcaaggtgaagtgccaaaagaagctggaaacagtgagctttgtgggggaatatctcatcttaacttacctccatgctccacgcatgctgttagaaagataagcaaagggtggttaaggtctcttaaaatagctctggcatcaatagctgtggtcttgttcttagctctagttatgtctggatctactagaagttttgtggcagaatgcgaggcactgagaagtgtgcgccaccgttgtctcctaaagatcatcacttgctgctcaagcataaataaccaaggtcaagatttcaaggcactagtttttgagtttatgcccaatggcagcttaaatggttggcttcatccaaaatctgatatgcccattgttgacaatactttgagcctaactcaaaggctggacattgctgttgatattgtggatgctctggaatatcttcatatccactgccagccgccgatcgttcattgtgatctcaagccaagcaacatccttcttgcagaagacatgagtgcccgagttggagatttcggcatatcaagaatcctaactgaaagcgcgagcaaaacacagcaaaattcaagcaacacaatcggaataagaggctccattggctatgttgctccagagtatggggaaggctctgcggtctcaactcttggcgatgtttatagtctgggcatattgctgcttgagatgtttacaggaatgagcccaacagacgatatgttcagagattcattggacctgcacagtttctcagaggctgctcatcctgacagaatcctggagatagccgatccgacgctctgggtgcatgtagacgccgaggatagcatcacaaggagcagaatgcaggagtgtttgatttcagtcattggcctcggcttgtcctgctcaaagcatcaacccagagagcgaatgccaatacaagatgcagccctgaagatgcatgcgatcagagacgacgcttaccagatgttttctggctctctttcagtggacatggaagaggagacgaaacagattagcagcgatttgaagcaacagtga
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| Protein seq | MGLNTVLFSSACHSTLGYHCNHHHTMAMARASFLLLLSIFLHFMAVRGADGEDAAALLAFKAAAVGNGGGNGVLASWNGSAGPCSWEGVACGRHGRVVALSLPGHDLSGTLSPAVGNLTSLRKLNLSLNWLHGAIPASLGRLRRLRTLVLSFNTFSGEVPGNLTSCTSLEKLVLGSNKLTGNIPAELGNTLTRLQVLGLDNNSFVGHWPASLANLTSLGLLNLRMNSLEGTIPPEFGSNMPRLLSIDICSNNLSGALPSSLYNLSSLKVFDAGNNYLNGTIAADIGEKLPSLQYFGVFNNRFSGEIPSSFTNLTNLTSLQLSENGFSGFVPRDLGRLNALQNLQLAVNMLEAGDMKGWEFVDSLANCSKLVTLALSNNNFTGQFPISIVNLSTTLQTLYLGGSRISGSIPSDFGNLVGLRSLYLFSTDISGVIPESIGKLENLTTLYLNYNSLSGHVPSSVGNLTNLMKLFMQGNNLEGPIPANLGKLESLNVLDLSRNHFNGSIPKEILELPSISQYLNLSYNSLSGPLPSEVGSLTSLNELVLSGNQFNSFQGTIPVFLEDIKGLRVLNLTMNKFSGVIPDALGSIHNLQELYLAYNNLSGPIPAVLQNLTSLSMLDLSFNDLQGEVPKEAGNSELCGGISHLNLPPCSTHAVRKISKGWLRSLKIALASIAVVLFLALVMSGSTRSFVAECEALRSVRHRCLLKIITCCSSINNQGQDFKALVFEFMPNGSLNGWLHPKSDMPIVDNTLSLTQRLDIAVDIVDALEYLHIHCQPPIVHCDLKPSNILLAEDMSARVGDFGISRILTESASKTQQNSSNTIGIRGSIGYVAPEYGEGSAVSTLGDVYSLGILLLEMFTGMSPTDDMFRDSLDLHSFSEAAHPDRILEIADPTLWVHVDAEDSITRSRMQECLISVIGLGLSCSKHQPRERMPIQDAALKMHAIRDDAYQMFSGSLSVDMEEETKQISSDLKQQ |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q2R2D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0003640 | OsLiXu_01g0003640.01 | Chr01 | 2845064 | 2848422 | + | NAM | ||
| CDS seq | atggggttaaatacggtgctcttttcaagtgcttgtcactccacacttgggtaccattgcaaccaccatcacaccatggcgatggctcgtgctagcttcctgctgctgctgtccatcttcttgcacttcatggcagtgcgaggagcagacggagaagacgccgcagcgttgctcgctttcaaggccgcggcggtgggcaacggtggtggcaacggcgtgcttgcgtcgtggaacggcagcgccgggccgtgcagctgggagggcgtggcgtgtggccggcacgggcgggtggtggcgcttagcctgcccgggcatgatctctccgggaccctgtcgccggccgtcggcaacctgacatcgttgcggaaactcaacctgagtttgaactggcttcacggtgccatccccgcgagcctcgggcgcctgcgtcgcctcagaacactcgttctgagcttcaacaccttctccggcgaggtccccggcaacctgacctcctgcaccagcttggaaaagctggtcctcggcagcaacaagctcaccgggaacatacccgctgagctcggcaacacgctgacacggctccaggtgctaggcctcgacaacaacagcttcgtcggccattggccggcttcactggccaacctgacgtccctgggattactcaacctcaggatgaacagtctcgagggcacaatacctcctgaattcggcagcaacatgccgcgccttctctccatagacatctgctccaacaacctgagcggtgcactcccgtcttccctgtacaatctgtcgtcgctaaaggtctttgacgcaggaaacaactatctgaatggaaccattgctgctgatatcggtgaaaagctccctagtctgcagtattttggagtgttcaacaaccggttcagcggggaaattccttcctcgttcaccaatctcactaacctcacaagtctgcagctgtcagaaaatggatttagtggctttgtgccacgtgatctagggaggttgaatgctctgcagaatctgcaactagctgttaatatgcttgaagcaggggacatgaaggggtgggaatttgttgattcattggcgaactgcagtaagctagtgactttagctctcagtaacaataatttcacagggcagttccctatttcgattgtaaacctctcgacgactctccaaacactttacttgggtggcagtaggatttctggaagcatcccctctgatttcggtaatttggttggtctaagatcattatacctgtttagtactgacatatcaggtgtaattccagagagcattgggaagctggaaaacttgactacgctatacctgaattacaatagcttgtctggccatgtaccgtcttctgtgggaaacctcaccaatctgatgaagctattcatgcaaggcaacaacttggaaggaccaatcccggcgaatcttggtaagctggaaagcctgaatgttcttgatttatcaagaaatcacttcaatggttcgattccaaaggaaatattggagctaccttccatttcacagtacttgaatttatcatacaactccctctctggaccccttccttctgaagttgggagtttgactagcctcaacgagttggttctgtcaggaaaccaatttaactcgttccaaggaactatacctgtgtttctggaggacattaaggggctccgtgtacttaacctaaccatgaacaagttttctggtgtgattcctgatgcccttggtagcatccacaacctgcaagagttgtatctagcgtataacaacttgtctgggcctatccctgcagtgctgcagaatttgacatcgttatcaatgctggatctatccttcaatgatcttcaaggtgaagtgccaaaagaagctggaaacagtgagctttgtgggggaatatctcatcttaacttacctccatgctccacgcatgctgttagaaagataagcaaagggtggttaaggtctcttaaaatagctctggcatcaatagctgtggtcttgttcttagctctagttatgtctggatctactagaagttttgtggcagaatgcgaggcactgagaagtgtgcgccaccgttgtctcctaaagatcatcacttgctgctcaagcataaataaccaaggtcaagatttcaaggcactagtttttgagtttatgcccaatggcagcttaaatggttggcttcatccaaaatctgatatgcccattgttgacaatactttgagcctaactcaaaggctggacattgctgttgatattgtggatgctctggaatatcttcatatccactgccagccgccgatcgttcattgtgatctcaagccaagcaacatccttcttgcagaagacatgagtgcccgagttggagatttcggcatatcaagaatcctaactgaaagcgcgagcaaaacacagcaaaattcaagcaacacaatcggaataagaggctccattggctatgttgctccagagtatggggaaggctctgcggtctcaactcttggcgatgtttatagtctgggcatattgctgcttgagatgtttacaggaatgagcccaacagacgatatgttcagagattcattggacctgcacagtttctcagaggctgctcatcctgacagaatcctggagatagccgatccgacgctctgggtgcatgtagacgccgaggatagcatcacaaggagcagaatgcaggagtgtttgatttcagtcattggcctcggcttgtcctgctcaaagcatcaacccagagagcgaatgccaatacaagatgcagccctgaagatgcatgcgatcagagacgacgcttaccagatgttttctggctctctttcagtggacatggaagaggagacgaaacagattagcagcgatttgaagcaacagtga
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| Protein seq | MGLNTVLFSSACHSTLGYHCNHHHTMAMARASFLLLLSIFLHFMAVRGADGEDAAALLAFKAAAVGNGGGNGVLASWNGSAGPCSWEGVACGRHGRVVALSLPGHDLSGTLSPAVGNLTSLRKLNLSLNWLHGAIPASLGRLRRLRTLVLSFNTFSGEVPGNLTSCTSLEKLVLGSNKLTGNIPAELGNTLTRLQVLGLDNNSFVGHWPASLANLTSLGLLNLRMNSLEGTIPPEFGSNMPRLLSIDICSNNLSGALPSSLYNLSSLKVFDAGNNYLNGTIAADIGEKLPSLQYFGVFNNRFSGEIPSSFTNLTNLTSLQLSENGFSGFVPRDLGRLNALQNLQLAVNMLEAGDMKGWEFVDSLANCSKLVTLALSNNNFTGQFPISIVNLSTTLQTLYLGGSRISGSIPSDFGNLVGLRSLYLFSTDISGVIPESIGKLENLTTLYLNYNSLSGHVPSSVGNLTNLMKLFMQGNNLEGPIPANLGKLESLNVLDLSRNHFNGSIPKEILELPSISQYLNLSYNSLSGPLPSEVGSLTSLNELVLSGNQFNSFQGTIPVFLEDIKGLRVLNLTMNKFSGVIPDALGSIHNLQELYLAYNNLSGPIPAVLQNLTSLSMLDLSFNDLQGEVPKEAGNSELCGGISHLNLPPCSTHAVRKISKGWLRSLKIALASIAVVLFLALVMSGSTRSFVAECEALRSVRHRCLLKIITCCSSINNQGQDFKALVFEFMPNGSLNGWLHPKSDMPIVDNTLSLTQRLDIAVDIVDALEYLHIHCQPPIVHCDLKPSNILLAEDMSARVGDFGISRILTESASKTQQNSSNTIGIRGSIGYVAPEYGEGSAVSTLGDVYSLGILLLEMFTGMSPTDDMFRDSLDLHSFSEAAHPDRILEIADPTLWVHVDAEDSITRSRMQECLISVIGLGLSCSKHQPRERMPIQDAALKMHAIRDDAYQMFSGSLSVDMEEETKQISSDLKQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152000 | RBH | 0.000000 | 0.167476 | 0.266094 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05870 | SBH | 0.219167 | 0.243807 | 0.205493 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003760 | SBH | 0.337620 | 0.000000 | 0.482718 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003590 | SBH | 0.000000 | 0.161752 | 0.352982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003760 | SBH | 0.162260 | 0.429489 | 0.828635 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003420 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003660 | RBH | 1.253610 | 2.609523 | 3.362861 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0049100 | SBH | 0.6343385 | 1.8059665 | 1.520102 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003580 | SBH | 0.0 | 0.000000 | 0.047951 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0049400 | SBH | 0.239782 | 1.0651705 | 0.714683 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003370 | SBH | 0.031918 | 0.046660 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003490 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0005030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003540 | SBH | 0.0 | 0.265276 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003710 | SBH | 0.000000 | 0.000000 | 0.166276 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003560 | SBH | 0.000000 | 0.929255 | 0.184512 |
