Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0002570 | OGI:01002250 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:1948352-1951609 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctatcattccatctcgttagggctagcgaatcgaaatcaccgcaaaacaaaaacgaagggaatgctgatgaaaaaaaaaaacggaacggggaagaaatgggatcgtaagcggaaacgaacttaccacacgtgaatccggagggcgtcaggccttcggggcattggcactccagcccatcgtcagtgacattcacccgacaccagccgccgctcctcgagcaatcttcgcaatcgtccggccccgccgcggccgtgtagtcgagaagaaatccacccttgatgagccgctcgtagttcttcgccaccgcaccgtcgtaccccagcaccgggatcattgacaccgtgcagttccccggcagttgtctgaaatcgtcatcaggcttgtacttccccgcaagccaggcatacgagttggacgaatcatttttcgcacaacccacgggcgcccaagagattggaagctgcgatcgaccctggctgcagttgtagaggaagactagctcccggtttatggggctaatcttgaacagcgtgaggccgaggtcggaggaggcgttgacaaaactctcgatgacgcactggccgtccgtcagctgctcgttggtgaccatgaaggagctgttgtggtagaagatgtgctggatttggtatgtccagaacccgttcttgagggaagcatttttgtggtcgcatgtgacctgaaaggctcggtagccgcactccggcggatgcttgccggcgagccagaatggatagccgatggtaaggttcccgcacctcgccggctcgcagaacggcgatgtggtgttggtcgtgtttatggcatcaacggtggagctagcaattgggagagtgatcagcagtagcatggctaaacagatcatagcagttgcagaagcacgaaacggatgcatgctgcagtggaagcgatcgatcgatacgcagcagatttgggcgagacgaagaaggcgaggaactgatgatgcatgcatcggggaagaagataacggattggtcaggcaggcagcgcgaaacatgttgcttgccgaatgtgttgaccattcctcagtctccttgttggaccattcttctccggtagctgatgctgcttattggtcactgatgtggacatcagcgagtgccgcccagtggcacagtggcagctcaccaacatgtggggtcatcgctaaatcgggcccaccttccagtgaccgcagaggattaggactacccacggtggagacctattcgattcagacttggttttggaaaattcgggggtaacccatccgacgcgagaaaaataacggtccttcaattcgttctaactgaaatgatgatgactgagcagtagcagactagcagtctcacgtcgctggagaaaatatggtctcaagaactctcagctggattattctacgtgttactacgtagtatgtgcgtgtggatttttgttacgcattctgaacagtgtcctttttttttttctttgagagagtatgagaccgcgtagtagtacgtacttggctgctaagtttctgcacatccgcgttgcgatttgggttgagcgcactactccactagcgatttgggtacccacgaaacccataataccccctaagcgtcctccttcaaTtttttttatcatagttgataagataggaggtgttaaaggtctcataatagcattttagcatagtttaatactgagattatgtgtttatatcgatgtactcggtatgttgagtccccccaacttttgtttctggatccgcccctgtccactagagaagcgcacatcggtagaaacgacggtacgacgcgtactatttttcttcttccaaccaatccagtccgtctagaataagttttaccgatccatgtcggcttaccaaattaggttatggttaattgtacctgggccctgtttggaagattagcccaaggctaattttaagagctaatatttagtcatgaattggtatgctaaacattagcctagggtggtatgtttgggtccatgggctaattcaaggctaaaaggtggagaaagagtagaaagagaggagagagagagagagctgttttttgatgatcaccacacaaaattagccccattagcacccattggaggggctaatgttttaaggggggctaattcacattagcttaaaattaacccacctgtttagatccttaaggactaatttaaggctaaaaggtgagggctaaacattagcccatggaaccaaacaggccactggtcgcctgatcgcgtcactttacgcgtgaaatttcgtaataaaggttgggcgacagaggcgtatactacgtcacgggatttatcattattgggctgggaaaaaccctggccgttcttgggccggcccaaaacatcacgaaacggaacaaacaatgcatacgtgtactcgagtgggcgtacctggagatttcgtatcagcccgcgcggtgattgtcacggtccggaagcacgcgaaggtccagggctcgtgcgccgcgcgccggcggtggccgcaccagccgccggccttctcgcagtcgccgcagtcgccgtcctcccgtggcctccagccgagctcgaaccccatgttgagcgccggcacgacggcggcgtcgagcgggctgctgtaattccccccgaggagggaccgcctgagcaccggcatgccgacgacgtcctggcacagcgccgcgtacccgtacggcgtgcggtcgtcgccgtcgcggaagacgtaggagtggtggcggccgtcgccctcgaggcaggccaccaggtgggccggcatgcccatgaaggagcagtggatgaagaaggtgaggttggcgtccctgtccgtcagcgacagcggcgaccccgccgggagggacaggttgcggccgacgagcgggcaggtgttcgaccgggagaacacgccgaggtcgaacagggacaccgtcctgtcgccgtacaggatgtgcgtcacggcgtactcccccgacgggagcgccagcaccggcgtgtcgcggcggcactccaggcgcaggctcgggtacccgcagtagtaggcgccgccgccgctcgtgttgtcgtcgatccagaacgggtaccggatgtcgacggcgtggccgcaccggtacgacgggcacgacggcgtggtggcgttcgggatgatctctgcggctgcatgggtggtggcgatgaggttggataggaacaggaagagccaaagaggaggagagcttggtgttggcat
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| CDS seq | atgccaacaccaagctctcctcctctttggctcttcctgttcctatccaacctcatcgccaccacccatgcagccgcagagatcatcccgaacgccaccacgccgtcgtgcccgtcgtaccggtgcggccacgccgtcgacatccggtacccgttctggatcgacgacaacacgagcggcggcggcgcctactactgcgggtacccgagcctgcgcctggagtgccgccgcgacacgccggtgctggcgctcccgtcgggggagtacgccgtgacgcacatcctgtacggcgacaggacggtgtccctgttcgacctcggcgtgttctcccggtcgaacacctgcccgctcgtcggccgcaacctgtccctcccggcggggtcgccgctgtcgctgacggacagggacgccaacctcaccttcttcatccactgctccttcatgggcatgccggcccacctggtggcctgcctcgagggcgacggccgccaccactcctacgtcttccgcgacggcgacgaccgcacgccgtacgggtacgcggcgctgtgccaggacgtcgtcggcatgccggtgctcaggcggtccctcctcggggggaattacagcagcccgctcgacgccgccgtcgtgccggcgctcaacatggggttcgagctcggctggaggccacgggaggacggcgactgcggcgactgcgagaaggccggcggctggtgcggccaccgccggcgcgcggcgcacgagccctggaccttcgcgtgcttccggaccgtgacaatcaccgcgcgggctgatacgaaatctccagccatgctactgctgatcactctcccaattgctagctccaccgttgatgccataaacacgaccaacaccacatcgccgttctgcgagccggcgaggtgcgggaaccttaccatcggctatccattctggctcgccggcaagcatccgccggagtgcggctaccgagcctttcaggtcacatgcgaccacaaaaatgcttccctcaagaacgggttctggacataccaaatccagcacatcttctaccacaacagctccttcatggtcaccaacgagcagctgacggacggccagtgcgtcatcgagagttttgtcaacgcctcctccgacctcggcctcacgctgttcaagattagccccataaaccgggagctagtcttcctctacaactgcagccagggtcgatcgcagcttccaatctcttgggcgcccgtgggttgtgcgaaaaatgattcgtccaactcgtatgcctggcttgcggggaagtacaagcctgatgacgatttcagacaactgccggggaactgcacggtgtcaatgatcccggtgctggggtacgacggtgcggtggcgaagaactacgagcggctcatcaagggtggatttcttctcgactacacggccgcggcggggccggacgattgcgaagattgctcgaggagcggcggctggtgtcgggtgaatgtcactgacgatgggctggagtgccaatgccccgaaggcctgacgccctccggattcacgtgtgccctaacgagatggaatgatagatga
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| Protein seq | MPTPSSPPLWLFLFLSNLIATTHAAAEIIPNATTPSCPSYRCGHAVDIRYPFWIDDNTSGGGAYYCGYPSLRLECRRDTPVLALPSGEYAVTHILYGDRTVSLFDLGVFSRSNTCPLVGRNLSLPAGSPLSLTDRDANLTFFIHCSFMGMPAHLVACLEGDGRHHSYVFRDGDDRTPYGYAALCQDVVGMPVLRRSLLGGNYSSPLDAAVVPALNMGFELGWRPREDGDCGDCEKAGGWCGHRRRAAHEPWTFACFRTVTITARADTKSPAMLLLITLPIASSTVDAINTTNTTSPFCEPARCGNLTIGYPFWLAGKHPPECGYRAFQVTCDHKNASLKNGFWTYQIQHIFYHNSSFMVTNEQLTDGQCVIESFVNASSDLGLTLFKISPINRELVFLYNCSQGRSQLPISWAPVGCAKNDSSNSYAWLAGKYKPDDDFRQLPGNCTVSMIPVLGYDGAVAKNYERLIKGGFLLDYTAAAGPDDCEDCSRSGGWCRVNVTDDGLECQCPEGLTPSGFTCALTRWNDR |
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| Function | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [UniProtKB/Swiss-Prot:P0C5E2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0002570 | OsLiXu_01g0002570.01 | Chr01 | 1948352 | 1951609 | - | NAM | ||
| CDS seq | atgccaacaccaagctctcctcctctttggctcttcctgttcctatccaacctcatcgccaccacccatgcagccgcagagatcatcccgaacgccaccacgccgtcgtgcccgtcgtaccggtgcggccacgccgtcgacatccggtacccgttctggatcgacgacaacacgagcggcggcggcgcctactactgcgggtacccgagcctgcgcctggagtgccgccgcgacacgccggtgctggcgctcccgtcgggggagtacgccgtgacgcacatcctgtacggcgacaggacggtgtccctgttcgacctcggcgtgttctcccggtcgaacacctgcccgctcgtcggccgcaacctgtccctcccggcggggtcgccgctgtcgctgacggacagggacgccaacctcaccttcttcatccactgctccttcatgggcatgccggcccacctggtggcctgcctcgagggcgacggccgccaccactcctacgtcttccgcgacggcgacgaccgcacgccgtacgggtacgcggcgctgtgccaggacgtcgtcggcatgccggtgctcaggcggtccctcctcggggggaattacagcagcccgctcgacgccgccgtcgtgccggcgctcaacatggggttcgagctcggctggaggccacgggaggacggcgactgcggcgactgcgagaaggccggcggctggtgcggccaccgccggcgcgcggcgcacgagccctggaccttcgcgtgcttccggaccgtgacaatcaccgcgcgggctgatacgaaatctccagccatgctactgctgatcactctcccaattgctagctccaccgttgatgccataaacacgaccaacaccacatcgccgttctgcgagccggcgaggtgcgggaaccttaccatcggctatccattctggctcgccggcaagcatccgccggagtgcggctaccgagcctttcaggtcacatgcgaccacaaaaatgcttccctcaagaacgggttctggacataccaaatccagcacatcttctaccacaacagctccttcatggtcaccaacgagcagctgacggacggccagtgcgtcatcgagagttttgtcaacgcctcctccgacctcggcctcacgctgttcaagattagccccataaaccgggagctagtcttcctctacaactgcagccagggtcgatcgcagcttccaatctcttgggcgcccgtgggttgtgcgaaaaatgattcgtccaactcgtatgcctggcttgcggggaagtacaagcctgatgacgatttcagacaactgccggggaactgcacggtgtcaatgatcccggtgctggggtacgacggtgcggtggcgaagaactacgagcggctcatcaagggtggatttcttctcgactacacggccgcggcggggccggacgattgcgaagattgctcgaggagcggcggctggtgtcgggtgaatgtcactgacgatgggctggagtgccaatgccccgaaggcctgacgccctccggattcacgtgtgccctaacgagatggaatgatagatga
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| Protein seq | MPTPSSPPLWLFLFLSNLIATTHAAAEIIPNATTPSCPSYRCGHAVDIRYPFWIDDNTSGGGAYYCGYPSLRLECRRDTPVLALPSGEYAVTHILYGDRTVSLFDLGVFSRSNTCPLVGRNLSLPAGSPLSLTDRDANLTFFIHCSFMGMPAHLVACLEGDGRHHSYVFRDGDDRTPYGYAALCQDVVGMPVLRRSLLGGNYSSPLDAAVVPALNMGFELGWRPREDGDCGDCEKAGGWCGHRRRAAHEPWTFACFRTVTITARADTKSPAMLLLITLPIASSTVDAINTTNTTSPFCEPARCGNLTIGYPFWLAGKHPPECGYRAFQVTCDHKNASLKNGFWTYQIQHIFYHNSSFMVTNEQLTDGQCVIESFVNASSDLGLTLFKISPINRELVFLYNCSQGRSQLPISWAPVGCAKNDSSNSYAWLAGKYKPDDDFRQLPGNCTVSMIPVLGYDGAVAKNYERLIKGGFLLDYTAAAGPDDCEDCSRSGGWCRVNVTDDGLECQCPEGLTPSGFTCALTRWNDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.281238 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136700 | SBH | 0.280030 | 0.176649 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04440 | RBH | 0.100274 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002550 | SBH | 0.373042 | 19.424969 | 1.176633 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002450 | SBH | 0.294852 | 1.423079 | 0.110268 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002640 | SBH | 0.722147 | 3.009928 | 6.327075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002470 | RBH | 0.103742 | 0.039475 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002540 | RBH | 1.815435 | 4.673926 | 1.852053 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0033200 | RBH | 1.3763825 | 11.347371 | 2.5778695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002510 | RBH | 1.200608 | 0.941127 | 1.098126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0033000 | SBH | 5.843693 | 20.8586295 | 1.5198405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002360 | RBH | 0.0 | 0.092861 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002540 | RBH | 0.0 | 5.608016 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002610 | RBH | 0.0 | 8.194450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0001010 | SBH | 0.063087 | 0.0 | 0.091681 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002470 | SBH | 0.109337 | 1.611634 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002670 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002550 | SBH | 0.0 | 0.000000 | 0.000000 |
