Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0002550 | OGI:01002250 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:1923290-1929304 | ||||||||
| Gene Symbol | WAK1, OsWAK1, WAK-1 | ||||||||||
| DNA seq | ctatacgaacttgatcctaatagtttcagggagggtgaacttaccagaagatgtcactggcagctctggcggtggcaggttCccccatgttatgaggaagcctccacgcacgagctccacatacctgctggcgttcacctcgctaccaggcggctccagcaccggcaagaacgtggctctgcagccttccaagtagtaggcatcgtagttgctccggtcgtcgtaacgctctcctaggcgagcaaacgagttgttacggcatctcgtctccacgagccccagttgttcatgccgctccgccggcggcgccttggtgcagttgtagaagacgaggtcgagattggcagcagagctgatcctaaacgggacggctagcttggcggaggtgttccagctcgggatttggcagcggtttaaacttgtcaggtcatccagcttgcgacggtctaaggcgagcagagtacgttccccgtaagatatgttgatgatctgaaacccgaaaattgaagaggtccgaagagtcccgacaccggtggattggttgcagtcgacctggaaatccagaggaccacacggcctatccatctggctttgggtgatccagaacggcgaggagatattcaggttgccgcatttggtcgggcagccgcttcctctctcctcagcttccctcgccgccacggcgagcatgaacgctgtccaccaagccgagacgacgaccaaggcgaagaagaagctcggggccatcgacacagaaggggaaaatagggggatttctgaattggtgatggcctgactggtttgtgggaggatggaagggataatatggttgaacgattccggaacatgtcgatgaggagacgaaatgtttgaccgcggatacgcgaacgatcgtcgtccacgcgtgcgagttttcggggtgcctatggctggaaaaaattgtgtaagctactaccaagctgccgtgacatgtgactggaccagtttgtctgtctggcctcagcgtcgtatagtcgtattggttcctattccagctagtgcacgctgctatcgagcatctagtccaccattgttttttcccttttgtctaacaccttggcaggtgccgacgccctttgctacacacctactgtaaaccggtaggcaccaagctgagactagtcaactttccagccggtcaacgcttacctgtacggatgtaactaaaacaaaaaaaaaaacagactactgtctgaacccagggagtataccaagaaatctagttgtagttattattcagtaaagcgtgttaatatatccatcttctctctaaccaaaaacctataaacgcatgcgctgctaattcctcccataccgctaactactgctagaccaaatggataagctcacgagtgaacttaccagactgctgctgcggcggctgccatgtcaagaggaaaccatcactgatgagctgctcgtagttgctcgcgtttgcgtcgccatatctgcccctcaccggcacgatcacagcgtcgcagccctccagaaagcgtacagactcgttgtaacgctcctcgaggcgagcataagtgttgttgcggcatttcgtcccgacgagacccaggacacgccgctccgccgccgtcggaggctcggtgcagttgtagaagacgagtttcttattgacggggctgatcgagaatggcaaaccgagcttggaggaggtgttggacctcgggacatggcagtcaccggagctgtcgaagtcgtccatcttttggacatcggtgacaagcaaggagctgttgctgtagaagatgtcgatgatctggaacttgaactgccggttcttccgagggtaaccgaggtaaggaatgctgtcgttgcaggtgacctggaagccgaaccatcgacagctcgtctcctcgtcctgctccgtgacgagcccgaatggctgcaagatgctcacgttgccgcatctcccggccttgcagccttctcctcctccctgtgcatctgctgctgctgctgagagtatgagaggcaacgaacaggccacccagatggaaggtgccaagaacatgaacatggcaggaggatgcgtgggaaaccaagagaagatttggaagattgcagcaatggggcgaattggagattggaattgtgaggtgaatataatggtaagggaatagtgagaatacattggagcgtggccgctaattttgacttagatatttcttgaggtccccccggataattgggataagctgcaaccaccatcgtgatgtgactgtaccaccaatccaccatggtcgtcttggttctttcggattgcgcactctgcatcgatcgttctttgcaaggagggacatggcaacttttccatctggtgaacgcatatgcgtacaagtgtacgtatgtgattattttgtgaggcagaatataccgtgatttttcctatagagtataattagtatcttgtactagtatatattatgctcatactacctcgggggcatcatatgcccgaatcagcaagctgagcacccatcaaacatgcaattatacagtagtatttcttggattgacgaacactaacgtggaatttagttctaggtagtctatggtcagcttctaggataacttggaattttagttgcagctagtactgcacgcaactatcggtacctccatatttcgtccctttttgtcaaagcaccttgccaggtagcaacggcctttcatacataaattcagacagatattagtcaaaattcttgctggtcaacgcttacatgtacggctgtgagttgtaagttaagcaaaacaaaaacagagtactttatgaaccaacgagtattaaggctgcgttctgcagcagcgaactgggaaaaaaactctctcattcttcacgcgcatattttttcgaactgctaaaaaattatagaaaaattgcttttaaaaaatcatattaatatattttcaaatttaaaacacttaatactcaattcatataagctaatgactcatcttgtttgttgtatcttcttaattttctcatttcatctctcaaacacaatctaaggattattaagtggattgttgtacagattatctacttgattgtaggtataaattaaatatttaataaatgaacttaaaataagtgtgcaatacaatagaataTttttttgagaaaatatattttaggagcgtagagcacaaaatttcatttcaacaatttggaaagtaattttgaaaaaaaaagtaagcctaaaaattatgtaggtatctatcaactcctagaatcagaatctttgcaggaaaggcattagcatttggtaccatattttgccgaaatctatgtcattatcagcaaagctcacaatgctcttttatgtaaaagcacttggatagactcatagaccggaattagcttagtggtggcaatctctagtactatcgttaatgggggcaccaaggtagaatattgttttgcattttctatatattttttatttttatataagctttcattccccattgtattaaaatgtcaatacaaactacactgattaaagttcataatttcatatctctagcactaccgcatttcctgttttgaattttatatttttttagggaacaatttttcatatttgtttattgcattttaaagttctttttgaaaatagtagcatttaaaagttgagaggggcagtgggtactccttccagtttcaaaattattgacgttttgaacatgatctcacatactaagaagttatcaatttactattttaccatattaaatatataaattatactcatggtaatcactacactactgccgttggtttgaatcaatcacctgtatcggtgcgagctaaaggtccaattccctagctttttttacttggtttttacttccaatcatgtagggcaaagcggtccaatataacatgctaagataaaagcattaacaattagcaatcaccatttacaaaggttaaaacattaagatatttgtaccggagggagtagtaactaaggttaagaagccaatagatcgcaccattatgatgtctttatatgctgagctttccattgtgtttctaattatgtctgcgtatacgttgggctccaaaaattcgagaaacgtccaaggatttttcggctagctccataagatagtgggctagatgatatggattcgaaatcttacccatgctaattatttaatattagatttttctctaatatttgagtcttttggctccaaaaattcctggcccgccacttcctaacaactccgattgaccgctttcgaaagatataaagcgcaacttatcccgttagccttatcagttcaaagaaaagcccctggtagcggctggtgcgccgtgcacgatgccaaatttagcccgtgcccatctgtcccccctattttggtacttatacgcaaaatgccacttgctcattgtcacctactgtgagcaattagtttatgggccagctcaacacactcgaagcttcaggcaactactgcgaacgtcttcttgtcctaataatggatacgttcactaatgagaatggtgaattttcggggggaaaagaagaggggaagcagaaggatctctgccctgggaagttgggagacagagacaaaggaaaggacggaattcatgcgtttacccgagaatcaatcacgctgggtggtcaatggaagcaccagtggctagccgcccatgtcaactcctgcctgcagcctgcttgataagtcgtcgtcaacgtcaccacccaggcaaacaaaccctcccaaaatttaccaccatctctgcagctgactagccagccgcccatgtaactacccgagaccgcgagcgagcgagaggttgagtaaaatccaagggcattggcgtggCCCAGTAATTCAACTCCAAATCCGCATGGGACCTACGGGAGATTGCAACCTTGGAAGTACTAGTATTTGGCTATGGATCGCAACGCGCCAATTTGGCCGTTCACTTAACCGTACACCGAGccaaaatcttcaactagctaacacatgcgtcagattgggcgataggcaagtgtgtgtactcaccggcgcatgtcgagcggcgcagcttgccgtcggagcagaggcacgcgaacgccgccgcggaatcgttgatgtaccggcactgcccgccggtcgcgttacaggcgtcgcagtcgccgaacccgttcttctgccactccaacacgaaccccttcttgaactgcgggctgtagttggtccccgccgtcaagttcaccggcggctccggccacagcaccggcaggtacgagtacgtgcagttccctgcttggatcgccggtggcttgtcacggtcgtagctcccgccgaggtacgcgtagataggcttactgcagctggggatggtggcgttcactaggccgtcgatctccggtggctccgtgccgttgcagctgtagaggaagcagatggcccggttgctgctgctgatcgtgaacgggctgagggctaggctggacgatatgttgaagtcggtgcggcacacgccgtcgccgccgtcggcgacccttttgtgtgccgcgacgaatgagctgttggtgtagttgatgctgaggacgaggatttgcgagcccctcaacgacgccacgccgtcggggctacaccacacctcgaaggccgggtggccacaggaggccggagctgacgacggcgacgactggttggggttggggccgcctagccagaatgggtacctgacggtgaggttgccgcatgtcgccggctcgcactcggcgcgcgcgtggtggcacaggaggagcaaggaggccaagagtggcaagcacaacaaggtcgagtgcatcttgccactcgtggagctagctgctacacaatggaggccggattggagagcagcagaatgctggaaagggaggggaaggtctaatgctcgagaaatgctattgccattgccttgtttttcttgactagtctttccgatttgttagacTtttt
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| CDS seq | atgcactcgaccttgttgtgcttgccactcttggcctccttgctcctcctgtgccaccacgcgcgcgccgagtgcgagccggcgacatgcggcaacctcaccgtcaggtacccattctggctaggcggccccaaccccaaccagtcgtcgccgtcgtcagctccggcctcctgtggccacccggccttcgaggtgtggtgtagccccgacggcgtggcgtcgttgaggggctcgcaaatcctcgtcctcagcatcaactacaccaacagctcattcgtcgcggcacacaaaagggtcgccgacggcggcgacggcgtgtgccgcaccgacttcaacatatcgtccagcctagccctcagcccgttcacgatcagcagcagcaaccgggccatctgcttcctctacagctgcaacggcacggagccaccggagatcgacggcctagtgaacgccaccatccccagctgcagtaagcctatctacgcgtacctcggcgggagctacgaccgtgacaagccaccggcgatccaagcagggaactgcacgtactcgtacctgccggtgctgtggccggagccgccggtgaacttgacggcggggaccaactacagcccgcagttcaagaaggggttcgtgttggagtggcagaagaacgggttcggcgactgcgacgcctgtaacgcgaccggcgggcagtgccggtacatcaacgattccgcggcggcgttcgcgtgcctctgctccgacggcaagctgcgccgctcgacatgcgccgcagcagcagcagatgcacagggaggaggagaaggctgcaaggccgggagatgcggcaacgtgagcatcttgcagccattcgggctcgtcacggagcaggacgaggagacgagctgtcgatggttcggcttccaggtcacctgcaacgacagcattccttacctcggttaccctcggaagaaccggcagttcaagttccagatcatcgacatcttctacagcaacagctccttgcttgtcaccgatgtccaaaagatggacgacttcgacagctccggtgactgccatgtcccgaggtccaacacctcctccaagctcggtttgccattctcgatcagccccgtcaataagaaactcgtcttctacaactgcaccgagcctccgacggcggcggagcggcgtgtcctgggtctcgtcgggacgaaatgccgcaacaacacttatgctcgcctcgaggagcgttacaacgagtctgtacgctttctggagggctgcgacgctgtgatcgtgccggtgaggggcagatatggcgacgcaaacgcgagcaactacgagcagctcatcagtgatggtttcctcttgacatggcagccgccgcagcagcagtctgccataggcaccccgaaaactcgcacgcgtggacgacgatcgttcgcgtatccgcggtcaaacatttcgtctcctcatcgacatgttccggaatcgttcaaccatattatcccttccatcctcccacaaaccagtcaggccatcaccaattcagaaatccccctattttccccttctgtgtcgatggccccgagcttcttcttcgccttggtcgtcgtctcggcttggtggacagcgttcatgctcgccgtggcggcgagggaagctgaggagagaggaagcggctgcccgaccaaatgcggcaacctgaatatctcctcgccgttctggatcacccaaagccagatggataggccgtgtggtcctctggatttccaggtcgactgcaaccaatccaccggtgtcgggactcttcggacctcttcaattttcgggtttcagatcatcaacatatcttacggggaacgtactctgctcgccttagaccgtcgcaagctggatgacctgacaagtttaaaccgctgccaaatcccgagctggaacacctccgccaagctagccgtcccgtttaggatcagctctgctgccaatctcgacctcgtcttctacaactgcaccaaggcgccgccggcggagcggcatgaacaactggggctcgtggagacgagatgccgtaacaactcgtttgctcgcctaggagagcgttacgacgaccggagcaactacgatgcctactacttggaaggctgcagagccacgttcttgccggtgctggagccgcctggtagcgaggtgaacgccagcaggtatgtggagctcgtgcgtggaggcttcctcataacatggggGaacctgccaccgccagagctgccagtgacatcttctggtaagttcaccctccctgaaactattaggatcaagttcgtatag
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| Protein seq | MHSTLLCLPLLASLLLLCHHARAECEPATCGNLTVRYPFWLGGPNPNQSSPSSAPASCGHPAFEVWCSPDGVASLRGSQILVLSINYTNSSFVAAHKRVADGGDGVCRTDFNISSSLALSPFTISSSNRAICFLYSCNGTEPPEIDGLVNATIPSCSKPIYAYLGGSYDRDKPPAIQAGNCTYSYLPVLWPEPPVNLTAGTNYSPQFKKGFVLEWQKNGFGDCDACNATGGQCRYINDSAAAFACLCSDGKLRRSTCAAAAADAQGGGEGCKAGRCGNVSILQPFGLVTEQDEETSCRWFGFQVTCNDSIPYLGYPRKNRQFKFQIIDIFYSNSSLLVTDVQKMDDFDSSGDCHVPRSNTSSKLGLPFSISPVNKKLVFYNCTEPPTAAERRVLGLVGTKCRNNTYARLEERYNESVRFLEGCDAVIVPVRGRYGDANASNYEQLISDGFLLTWQPPQQQSAIGTPKTRTRGRRSFAYPRSNISSPHRHVPESFNHIIPSILPQTSQAITNSEIPLFSPSVSMAPSFFFALVVVSAWWTAFMLAVAAREAEERGSGCPTKCGNLNISSPFWITQSQMDRPCGPLDFQVDCNQSTGVGTLRTSSIFGFQIINISYGERTLLALDRRKLDDLTSLNRCQIPSWNTSAKLAVPFRISSAANLDLVFYNCTKAPPAERHEQLGLVETRCRNNSFARLGERYDDRSNYDAYYLEGCRATFLPVLEPPGSEVNASRYVELVRGGFLITWGNLPPPELPVTSSGKFTLPETIRIKFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0002550 | OsLiXu_01g0002550.01 | Chr01 | 1923290 | 1929304 | - | NAM | ||
| CDS seq | atgcactcgaccttgttgtgcttgccactcttggcctccttgctcctcctgtgccaccacgcgcgcgccgagtgcgagccggcgacatgcggcaacctcaccgtcaggtacccattctggctaggcggccccaaccccaaccagtcgtcgccgtcgtcagctccggcctcctgtggccacccggccttcgaggtgtggtgtagccccgacggcgtggcgtcgttgaggggctcgcaaatcctcgtcctcagcatcaactacaccaacagctcattcgtcgcggcacacaaaagggtcgccgacggcggcgacggcgtgtgccgcaccgacttcaacatatcgtccagcctagccctcagcccgttcacgatcagcagcagcaaccgggccatctgcttcctctacagctgcaacggcacggagccaccggagatcgacggcctagtgaacgccaccatccccagctgcagtaagcctatctacgcgtacctcggcgggagctacgaccgtgacaagccaccggcgatccaagcagggaactgcacgtactcgtacctgccggtgctgtggccggagccgccggtgaacttgacggcggggaccaactacagcccgcagttcaagaaggggttcgtgttggagtggcagaagaacgggttcggcgactgcgacgcctgtaacgcgaccggcgggcagtgccggtacatcaacgattccgcggcggcgttcgcgtgcctctgctccgacggcaagctgcgccgctcgacatgcgccgcagcagcagcagatgcacagggaggaggagaaggctgcaaggccgggagatgcggcaacgtgagcatcttgcagccattcgggctcgtcacggagcaggacgaggagacgagctgtcgatggttcggcttccaggtcacctgcaacgacagcattccttacctcggttaccctcggaagaaccggcagttcaagttccagatcatcgacatcttctacagcaacagctccttgcttgtcaccgatgtccaaaagatggacgacttcgacagctccggtgactgccatgtcccgaggtccaacacctcctccaagctcggtttgccattctcgatcagccccgtcaataagaaactcgtcttctacaactgcaccgagcctccgacggcggcggagcggcgtgtcctgggtctcgtcgggacgaaatgccgcaacaacacttatgctcgcctcgaggagcgttacaacgagtctgtacgctttctggagggctgcgacgctgtgatcgtgccggtgaggggcagatatggcgacgcaaacgcgagcaactacgagcagctcatcagtgatggtttcctcttgacatggcagccgccgcagcagcagtctgccataggcaccccgaaaactcgcacgcgtggacgacgatcgttcgcgtatccgcggtcaaacatttcgtctcctcatcgacatgttccggaatcgttcaaccatattatcccttccatcctcccacaaaccagtcaggccatcaccaattcagaaatccccctattttccccttctgtgtcgatggccccgagcttcttcttcgccttggtcgtcgtctcggcttggtggacagcgttcatgctcgccgtggcggcgagggaagctgaggagagaggaagcggctgcccgaccaaatgcggcaacctgaatatctcctcgccgttctggatcacccaaagccagatggataggccgtgtggtcctctggatttccaggtcgactgcaaccaatccaccggtgtcgggactcttcggacctcttcaattttcgggtttcagatcatcaacatatcttacggggaacgtactctgctcgccttagaccgtcgcaagctggatgacctgacaagtttaaaccgctgccaaatcccgagctggaacacctccgccaagctagccgtcccgtttaggatcagctctgctgccaatctcgacctcgtcttctacaactgcaccaaggcgccgccggcggagcggcatgaacaactggggctcgtggagacgagatgccgtaacaactcgtttgctcgcctaggagagcgttacgacgaccggagcaactacgatgcctactacttggaaggctgcagagccacgttcttgccggtgctggagccgcctggtagcgaggtgaacgccagcaggtatgtggagctcgtgcgtggaggcttcctcataacatggggGaacctgccaccgccagagctgccagtgacatcttctggtaagttcaccctccctgaaactattaggatcaagttcgtatag
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| Protein seq | MHSTLLCLPLLASLLLLCHHARAECEPATCGNLTVRYPFWLGGPNPNQSSPSSAPASCGHPAFEVWCSPDGVASLRGSQILVLSINYTNSSFVAAHKRVADGGDGVCRTDFNISSSLALSPFTISSSNRAICFLYSCNGTEPPEIDGLVNATIPSCSKPIYAYLGGSYDRDKPPAIQAGNCTYSYLPVLWPEPPVNLTAGTNYSPQFKKGFVLEWQKNGFGDCDACNATGGQCRYINDSAAAFACLCSDGKLRRSTCAAAAADAQGGGEGCKAGRCGNVSILQPFGLVTEQDEETSCRWFGFQVTCNDSIPYLGYPRKNRQFKFQIIDIFYSNSSLLVTDVQKMDDFDSSGDCHVPRSNTSSKLGLPFSISPVNKKLVFYNCTEPPTAAERRVLGLVGTKCRNNTYARLEERYNESVRFLEGCDAVIVPVRGRYGDANASNYEQLISDGFLLTWQPPQQQSAIGTPKTRTRGRRSFAYPRSNISSPHRHVPESFNHIIPSILPQTSQAITNSEIPLFSPSVSMAPSFFFALVVVSAWWTAFMLAVAAREAEERGSGCPTKCGNLNISSPFWITQSQMDRPCGPLDFQVDCNQSTGVGTLRTSSIFGFQIINISYGERTLLALDRRKLDDLTSLNRCQIPSWNTSAKLAVPFRISSAANLDLVFYNCTKAPPAERHEQLGLVETRCRNNSFARLGERYDDRSNYDAYYLEGCRATFLPVLEPPGSEVNASRYVELVRGGFLITWGNLPPPELPVTSSGKFTLPETIRIKFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.058886 | 0.384071 | 0.220225 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136500 | SBH | 1.404961 | 2.317796 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04530 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002440 | RBH | 2.433774 | 9.622909 | 4.370258 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002630 | SBH | 2.596569 | 1.368594 | 1.500379 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002460 | SBH | 1.044627 | 0.183400 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002530 | RBH | 35.548290 | 13.371234 | 7.509351 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0033300 | SBH | 0.3599865 | 0.7996085 | 1.4546695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002510 | SBH | 1.200608 | 0.941127 | 1.098126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0036000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002350 | RBH | 0.985835 | 0.241587 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002520 | RBH | 0.999251 | 5.476502 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002590 | RBH | 10.681702 | 17.887613 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0001000 | RBH | 3.530345 | 0.0 | 0.613883 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002460 | RBH | 3.364285 | 13.707711 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002660 | SBH | 1.803908 | 2.210027 | 2.645865 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002540 | SBH | 6.454588 | 34.987957 | 6.844718 |
