Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0000390 | OGI:01000840 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:246888-251706 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataattgtattttggaacggaggtagtaaaaattattatattttgggatggaaatagtagttaattagtagtgcattaattaagaagctactaggcgaggatgtcatgttgatgatgggcacgcacgagctggttgtcgtggtcctgcttgtccactagtacgggtacggcgggctggtcgtcgtcgaggtcgaggaggaagcagctgcagcaatggtgctcgaaggtgtcggcggcgggttgcggcaacgagagcaggacggtgacggcgttggggtcggcgaggacggggaggaagacgcagtaaatctcgctggtgagggggcccatgtgcgccgccctccccttgccgaagtcgacgtcctccagccccagccgcgtccacgccgagatgaccagcgtcgccgccaggtccggcttggcgccgcgccgctggtcgaggaggtccacggtggatcgcacgtagtcgtcgtcgatgcagtccttggcctcctgcaccagccgcaccccggcacccgccgccagctcggtcggcgtggcctcggcgcaggccagcacgaaggcgttgccgcagtaggtccaggggagctccggcttgaggcggcggcgcacgttgacggagaagaggagcttgacgcgcatgtcgggcgggggcggcggggcgagggagaggacccaggcgcgccacacgtgcgccgccagcgcctcgaaggaggtgcagctgcggagcgaccgggccttgaggcgccggaggtgggccgctgtgaaggtcagggagacgggggccagcggcatcagctggggctggatgaggaggaggctgctgctgctgctgctggtgtggtactccgggtgcgtgaaggcgacgcgcggagggcagcgcgggcgcaaggcgcggcggtcatggaggacgacggagaggtcgtcgtcacgatcggcggcgaggtccaggtcggctgcggcgaaggcggcccaggcgtggaggaagttggcggttgcgatgccgtcgcagacgcagtggctgatggctgtacacactaccatgcctccgcaccccagttgtgtcacctgcaacgcaaacatatttaattataattaattactccatcttctatctaggagtatagtatctgtatctccttgaatgaatgaaaattgaattgaattggtgcagacaagtgatgaacatacgacaccatctgatcgatcgatcaatctgagggagtactgcactgcactgtagactgtagtgtactccttcctactcgagtgctggacaggatgagttaaaagcagagctcgcaggacactgactgacgactgagtgtactcctactagtgataatcaagattattggcagtggagggtagtaagcgatcgaccgactcaaatttgaatgttaacatgttccgcatctcctaccgtatactcccttcgtctcataaaaaataaatatagaatcagattagaatgtgtcacatccgatactagattggttttctatgagacatagggagtatcaatcaattcattgatgcatactgtattgtccatatcctgtctctcaaatcgtacgttgcacaatattacatttattattaatgtaggctcccatcggttgcccattttgcctggcttattagaaaataaaaattaatttataagtaaaaattttataaatttgttcgtagcgatttaaaagccaatattaaaaaaattacgttaaaagcatctcaaaatcaacttcaaaatcaagttcaaaaattcaaattttggcttattttttggctgtttaggccaaacgatggggctgatattaattgttggaggctttggcaaagctagtctgaatgaatcaatcaattctcaaaatgaatgcacacatccacagagatctagtagctacagtgatctttggaagggaggaaaagtgagagtatcctcaaaatgaggttaattttaaactgatgaagactacttacctatatagctactactccttttgttacacaagaagaacatcttttagttttttatataatgtttgactcttcgtcttatttttaaaaaaaatataattagtactttatttttattagataataaaacataaacaagactttatatgtgggtaattttttaaaaaaatcattttttaaaaaaataagacagattgttaaacgttagatacaggaattcaaaaatgtgttctttgtgggaaaagacacaaatattagggaaggatgggataaggcttcgaacccaaagaatattaggggatgaagagatgaggcttcgaacccaggtcgtctagcccactatcttgtggagctaactggaagacccctagtcgtttctcaagttctttgtaggggcgtagtgagtatataattttgagctttacttttgaggtagccggccggtttaacctactcttagggtgtgtttgaggggaaggggattgaggagattgggaagatacgcaaaacgaggtgagccattagctcatgattaattaagtattaattattttaaatttcaaaaatggattaatatgattttttaaagcaactttcctatagaatttttttgcaaaaaacgcaccgtttagtagtttgaaaagcgtgcgcgcggaaaacgagactcaatctccccaaacaccctggaacgaacagagccttagtttttgcagaaatcaatatcccattctcatctcatctagctagatatatattgtcaagcattactctcactcactaagaagcaaggagcaaaggagcatatactcctggataggagtatgtacattaagagggtcatgttggggtatcgaacaaattgacaaatcgttggtgctcatgcatgcatgtactatatatgatgatactcctagctagattgatagatagacaggcttgacctcaatctaaatctattagctagtcctagtgatctactcctagtaaagcttagtggattggtgacagaaatttggatggacaagagatggaggctacccatgatggaatatggatgcatcccatatggctaaaaggctcctcgatctgctagctggtataaagatcatggcctccatgcctgcctttcttttcacaaagaaattaaagtcgatctctcctaacactatcctctcagctagcctttttcttttctgctaactttaccaatggctcaatggccaccccagccaccacttcgcattattgttcatccttgtacttgtatatactagtacacctcaacttcactccagctagctactactagcactaattaaacaatatctaccagccagctgctaattaataaatttaatctccagctgctgctgctgctgctgcttaattttggtggtggtcacaagcaaactaaaggaaatgacaatactaacatatactaattaatagattaagatcagcagcaagcctgcagttccatctccattagtcctctcaggagtcaagaggaagctccactttaatcaccaactactccctccgtcctaaaaaaaaggcaaaccatgggtttgcgtatccaattttgactgtccgtcttatataaaatttttttataattcgtattttcattgttgttagatgataaaacatgattaatattttatgcgtgacttgtctttttaatttttttcataatttttttaaataagacgaacggtcaaacgttggacacgaaaaccagggtttgtcttttttcgggacggagggagtagtgtagtaggataggagcagcagaaaaaagcagacaagctcatcatcatcatcaaacacgtacaggtcgatcaggggggcagaagtagtgcttcttcctttcttttcttttttttattatggaccaattgggtgggggtgcttaattaatactgctatatatgatcataccatcaatagttatccttaattactcccttatctccacatagtagagtattgatcgtactacgtacaatagggcgggccggcgatgatgaatatcaatgctagctagttcaaccagcacgcactagttcgatcgatgtactgtactgtctgcagcagccatatagataatcttaaagcaaaaactcaactaattaatagtatatagcatcaatcatgtagtatctagatagtgcatcagtgagttcgtcgttaatgaatgaatgaatgatatataattaataagtagagctagcgacgtcgtcctgatcgagataataaatacgaaatgaatgaaataagtacctggacgacgagcggcgggacggcgacgaaggtggcggcgtggactctgtagagcagcttcctccaggacttgtgcggcttggcggtggcaccggcacggaggaagtcggcggcggtgagggtgggcaggaaggcctcggcgaagagcgcgccctcggcattgcagtcgagcacaagcttatcgtcggcgtggtgcctgagccttccggccagtgggtagtagtggacgagggccctggcgagcgcggccctgagggcgtcggcggccacggcggcggagggcgggaagacgtagaggtacttgatggagaatcggaggaatcgctggtcgtccaggttggagaggtagagggagcgccgcggcgtggccgagctcggcgtcaccaacaccgcctcgccccggtactcgcactcgcccacgatctccatatatatctacctactatatgcttgctgcgctctgcttcaaatcaatccacctctctctctctcactccctctctatataatgcttattgctgttgcgcgcccaccctctcctctatctacctacctt
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| CDS seq | atggagatcgtgggcgagtgcgagtaccggggcgaggcggtgttggtgacgccgagctcggccacgccgcggcgctccctctacctctccaacctggacgaccagcgattcctccgattctccatcaagtacctctacgtcttcccgccctccgccgccgtggccgccgacgccctcagggccgcgctcgccagggccctcgtccactactacccactggccggaaggctcaggcaccacgccgacgataagcttgtgctcgactgcaatgccgagggcgcgctcttcgccgaggccttcctgcccaccctcaccgccgccgacttcctccgtgccggtgccaccgccaagccgcacaagtcctggaggaagctgctctacagagtccacgccgccaccttcgtcgccgtcccgccgctcgtcgtccaggtgacacaactggggtgcggaggcatggtagtgtgtacagccatcagccactgcgtctgcgacggcatcgcaaccgccaacttcctccacgcctgggccgccttcgccgcagccgacctggacctcgccgccgatcgtgacgacgacctctccgtcgtcctccatgaccgccgcgccttgcgcccgcgctgccctccgcgcgtcgccttcacgcacccggagtaccacaccagcagcagcagcagcagcctcctcctcatccagccccagctgatgccgctggcccccgtctccctgaccttcacagcggcccacctccggcgcctcaaggcccggtcgctccgcagctgcacctccttcgaggcgctggcggcgcacgtgtggcgcgcctgggtcctctccctcgccccgccgcccccgcccgacatgcgcgtcaagctcctcttctccgtcaacgtgcgccgccgcctcaagccggagctcccctggacctactgcggcaacgccttcgtgctggcctgcgccgaggccacgccgaccgagctggcggcgggtgccggggtgcggctggtgcaggaggccaaggactgcatcgacgacgactacgtgcgatccaccgtggacctcctcgaccagcggcgcggcgccaagccggacctggcggcgacgctggtcatctcggcgtggacgcggctggggctggaggacgtcgacttcggcaaggggagggcggcgcacatgggccccctcaccagcgagatttactgcgtcttcctccccgtcctcgccgaccccaacgccgtcaccgtcctgctctcgttgccgcaacccgccgccgacaccttcgagcaccattgctgcagctgcttcctcctcgacctcgacgacgaccagcccgccgtacccgtactagtggacaagcaggaccacgacaaccagctcgtgcgtgcccatcatcaacatgacatcctcgcctag
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| Protein seq | MEIVGECEYRGEAVLVTPSSATPRRSLYLSNLDDQRFLRFSIKYLYVFPPSAAVAADALRAALARALVHYYPLAGRLRHHADDKLVLDCNAEGALFAEAFLPTLTAADFLRAGATAKPHKSWRKLLYRVHAATFVAVPPLVVQVTQLGCGGMVVCTAISHCVCDGIATANFLHAWAAFAAADLDLAADRDDDLSVVLHDRRALRPRCPPRVAFTHPEYHTSSSSSSLLLIQPQLMPLAPVSLTFTAAHLRRLKARSLRSCTSFEALAAHVWRAWVLSLAPPPPPDMRVKLLFSVNVRRRLKPELPWTYCGNAFVLACAEATPTELAAGAGVRLVQEAKDCIDDDYVRSTVDLLDQRRGAKPDLAATLVISAWTRLGLEDVDFGKGRAAHMGPLTSEIYCVFLPVLADPNAVTVLLSLPQPAADTFEHHCCSCFLLDLDDDQPAVPVLVDKQDHDNQLVRAHHQHDILA |
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| Function | Fatty alcohol:caffeoyl-CoA acyltransferase [UniProtKB/Swiss-Prot:Q9FFQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0000390 | OsLiXu_01g0000390.01 | Chr01 | 246888 | 251706 | - | NAM | ||
| CDS seq | atggagatcgtgggcgagtgcgagtaccggggcgaggcggtgttggtgacgccgagctcggccacgccgcggcgctccctctacctctccaacctggacgaccagcgattcctccgattctccatcaagtacctctacgtcttcccgccctccgccgccgtggccgccgacgccctcagggccgcgctcgccagggccctcgtccactactacccactggccggaaggctcaggcaccacgccgacgataagcttgtgctcgactgcaatgccgagggcgcgctcttcgccgaggccttcctgcccaccctcaccgccgccgacttcctccgtgccggtgccaccgccaagccgcacaagtcctggaggaagctgctctacagagtccacgccgccaccttcgtcgccgtcccgccgctcgtcgtccaggtgacacaactggggtgcggaggcatggtagtgtgtacagccatcagccactgcgtctgcgacggcatcgcaaccgccaacttcctccacgcctgggccgccttcgccgcagccgacctggacctcgccgccgatcgtgacgacgacctctccgtcgtcctccatgaccgccgcgccttgcgcccgcgctgccctccgcgcgtcgccttcacgcacccggagtaccacaccagcagcagcagcagcagcctcctcctcatccagccccagctgatgccgctggcccccgtctccctgaccttcacagcggcccacctccggcgcctcaaggcccggtcgctccgcagctgcacctccttcgaggcgctggcggcgcacgtgtggcgcgcctgggtcctctccctcgccccgccgcccccgcccgacatgcgcgtcaagctcctcttctccgtcaacgtgcgccgccgcctcaagccggagctcccctggacctactgcggcaacgccttcgtgctggcctgcgccgaggccacgccgaccgagctggcggcgggtgccggggtgcggctggtgcaggaggccaaggactgcatcgacgacgactacgtgcgatccaccgtggacctcctcgaccagcggcgcggcgccaagccggacctggcggcgacgctggtcatctcggcgtggacgcggctggggctggaggacgtcgacttcggcaaggggagggcggcgcacatgggccccctcaccagcgagatttactgcgtcttcctccccgtcctcgccgaccccaacgccgtcaccgtcctgctctcgttgccgcaacccgccgccgacaccttcgagcaccattgctgcagctgcttcctcctcgacctcgacgacgaccagcccgccgtacccgtactagtggacaagcaggaccacgacaaccagctcgtgcgtgcccatcatcaacatgacatcctcgcctag
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| Protein seq | MEIVGECEYRGEAVLVTPSSATPRRSLYLSNLDDQRFLRFSIKYLYVFPPSAAVAADALRAALARALVHYYPLAGRLRHHADDKLVLDCNAEGALFAEAFLPTLTAADFLRAGATAKPHKSWRKLLYRVHAATFVAVPPLVVQVTQLGCGGMVVCTAISHCVCDGIATANFLHAWAAFAAADLDLAADRDDDLSVVLHDRRALRPRCPPRVAFTHPEYHTSSSSSSLLLIQPQLMPLAPVSLTFTAAHLRRLKARSLRSCTSFEALAAHVWRAWVLSLAPPPPPDMRVKLLFSVNVRRRLKPELPWTYCGNAFVLACAEATPTELAAGAGVRLVQEAKDCIDDDYVRSTVDLLDQRRGAKPDLAATLVISAWTRLGLEDVDFGKGRAAHMGPLTSEIYCVFLPVLADPNAVTVLLSLPQPAADTFEHHCCSCFLLDLDDDQPAVPVLVDKQDHDNQLVRAHHQHDILA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0000390 | OsLiXu_01g0000390.02 | Chr01 | 250757 | 251627 | - | IsoSeq | ||
| CDS seq | atgccgagggcgcgctcttcgccgaggccttcctgcccaccctcaccgccgccgacttcctccgtgccggtgccaccgccaagccgcacaagtcctggaggaagctgctctacagagtccacgccgccaccttcgtcgccgtcccgccgctcgtcgtccaggtacttatttcattcatttcgtatttattatctcgatcaggacgacgtcgctagctctact
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| Protein seq | MPRARSSPRPSCPPSPPPTSSVPVPPPSRTSPGGSCSTESTPPPSSPSRRSSSRYLFHSFRIYYLDQDDVASST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146456 | 2.575803 | 1.457083 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0104900 | RBH | 0.142219 | 0.0 | 5.852255 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g01520 | RBH | 0.094302 | 0.0 | 0.835956 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0104900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000400 | RBH | 0.255537 | 13.762096 | 8.706323 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000400 | RBH | 0.0 | 13.431531 | 2.766319 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000400 | RBH | 0.0 | 33.255466 | 4.768778 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000400 | RBH | 0.0 | 0.650948 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000410 | RBH | 0.0 | 18.301054 | 14.284654 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0004700 | RBH | 0.8765315 | 20.229912 | 2.142797 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000400 | RBH | 0.0 | 1.909832 | 0.958873 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0005400 | RBH | 1.6659595 | 19.739201 | 8.8140035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0000400 | RBH | 0.0 | 0.142044 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000430 | RBH | 0.112316 | 35.180180 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000400 | RBH | 2.484945 | 21.036436 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0073620 | RBH | 0.0 | 0.0 | 0.297073 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000410 | RBH | 0.0 | 16.829029 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000420 | RBH | 0.0 | 1.539608 | 2.130048 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000410 | RBH | 0.0 | 11.723269 | 1.405153 |
