Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0018090 | OGI:12061690 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:23437759-23440350 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacgggatagaaattttggtaggtggaagaccaaccaaccaaccatcagtactggtattgacttatcattagcagaattttgtacaaaatcattatacaatgccacccattgaggttaacaaattcagctcaaatacacaacttcaaattcacagactaactacagctaagcggcgaagaatctgttcaaatcgagaggtttcgctcaatttgtccctgcctcaaaattttgtcatttgtctccaattttacaaaatttaaacaaaacagatgctccacacttcactggtatcccgatcctaacacgattctatactccgtatctccatactagcacgataaaacctaaaatgataatagaatcgatatatacggttctatcaccacagtatcctacaatatgtatcccaacgctaacgaccttggtggcaagaatagagtatcacaatgggttctctggtcccacttgaaccaaggttgcgggcagtgggtcccacctatcgttatactgacaggcgggcccaggctgtggagtcatacgctgacgtgggatgacctcatcgacagcggcgagtaggggaacgtggccaccgacgtctgcgtcacgccgtccgccgccgccgccgccctctcgtacgacgacgtcgggtacgagtgcacgaagtcgtagtagccgacctcgccggagctcaccggcgggggaggcggcggcggcggcggctccggcacctccgccgcgccgccggcgtcgaggtacctcgccacctccctcatcgtcggccgcaccgccggcgccgggtgcgagcaccagagcgcgaccttcaccgccgcctccgcctcgctggcgtcgaactccccgcgcagcctcgcgtccaccaccgcccccacctcgccggcggcgtacctctcccacgcccactccgccagcacgagctcctccggcggcgcccgcggctcgatcggccgccgccccgccaccacctcgagcgccagcgccccgaacgcgaacacgtccgccgccgccgtcgccttccccgtcctcgtcagctccggcgccaggtaacccagcgtccccaccaccctcgtcgtgctcgggttcgcgccgtgctcgtgcagcttcgcgagcccgaagtcgccgagccgcccggacatgtcgccgtcgaggagcacgttgctcgccttcacgtcgcggtggagcacaacgcgctcccacccctcgtggaggtagagcagcgccgccgccacgtcgcggaggaccttcacgcgggcgccccacgtcagccgcgccgccgcgaggccgtcgccgaacaggtgcttgtcgagggagccgttgggcatgtagtcgtagacgaggaggaggtcgccgcggcggcggcaccacccctggagctggacgaggttgcggtggcggagcctcccgatggacgcgatctcggcgacgaactcgcggaggccctgccgggactcgtgggagacgcgcttcacggcgaccaccgtgcgcggcggcttccccgggagcacaccgcggtacaccttgccgaacccgccggcgccgaggagctcgcggtcgcggaacccgcgcgtggcgcgccgcagctcggcgtagctgtagcggtgtggcccgtagtcgagctcccatggctcgaccacgtcgcggttcttgtaccggtgggcggcgtaggcggcggcgccggcgagggcgacgagcgcgacgaacgccgagaacgccgcggcgaggatcgccgacgtgcggttcttgccgccggcggcggggcggggcagcgacgggagggaggggacgtcgagcggcggcgcggcgccgccgccgagcttgaagctccagcccatgaggtagtgggagctcgcgaggaggcccgtggacgccgagaagccgacgaacatctggtcgaggaagatcggggacaggtcgacgtggaacgagatgagcggcgacgccggcttcgacgccgacgcggcggcgatggagacgttcagtagcttcgcgccgccgtcgtagtcgacccaggcgacgatggtgtcgccggacttgaggttgaccggcgcggcggaggcggaggcgttggagacgaggctgttgaggtcgacgccgacgtggttgtcattgatgtcgccgaactcgaagtcctgcacggtgtcgaactccaccgcgaggacgtggttggtggcgttgccgacgtcggcggcgctgagcagccccaggtactggctcggcagcgcgccggggaggcgcgggtcgggcgcgacgacgaacgcgaggccatggccgcccagcttcggatactccggcaccaccgcgaacgcgaactccgtcgagaacgacaccgccgcgccgccggcgaggaggcggaggggggacgggtagaacgcgtggccgatgagccgcgacgtctcgttggtgagccgcaggatgccgtccggccggagctcggtcacgccgttcagcgtcaggttcgggctgttcccggcgccgccgccgccgccgccgttgcggaagccggagtaggtgaattcctgggaggcggcgagggcggcgaggaggaggaggaggaggacgacggcgaggtgtcgcat
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| CDS seq | atgcgacacctcgccgtcgtcctcctcctcctcctcctcgccgccctcgccgcctcccaggaattcacctactccggcttccgcaacggcggcggcggcggcggcgccgggaacagcccgaacctgacgctgaacggcgtgaccgagctccggccggacggcatcctgcggctcaccaacgagacgtcgcggctcatcggccacgcgttctacccgtcccccctccgcctcctcgccggcggcgcggcggtgtcgttctcgacggagttcgcgttcgcggtggtgccggagtatccgaagctgggcggccatggcctcgcgttcgtcgtcgcgcccgacccgcgcctccccggcgcgctgccgagccagtacctggggctgctcagcgccgccgacgtcggcaacgccaccaaccacgtcctcgcggtggagttcgacaccgtgcaggacttcgagttcggcgacatcaatgacaaccacgtcggcgtcgacctcaacagcctcgtctccaacgcctccgcctccgccgcgccggtcaacctcaagtccggcgacaccatcgtcgcctgggtcgactacgacggcggcgcgaagctactgaacgtctccatcgccgccgcgtcggcgtcgaagccggcgtcgccgctcatctcgttccacgtcgacctgtccccgatcttcctcgaccagatgttcgtcggcttctcggcgtccacgggcctcctcgcgagctcccactacctcatgggctggagcttcaagctcggcggcggcgccgcgccgccgctcgacgtcccctccctcccgtcgctgccccgccccgccgccggcggcaagaaccgcacgtcggcgatcctcgccgcggcgttctcggcgttcgtcgcgctcgtcgccctcgccggcgccgccgcctacgccgcccaccggtacaagaaccgcgacgtggtcgagccatgggagctcgactacgggccacaccgctacagctacgccgagctgcggcgcgccacgcgcgggttccgcgaccgcgagctcctcggcgccggcgggttcggcaaggtgtaccgcggtgtgctcccggggaagccgccgcgcacggtggtcgccgtgaagcgcgtctcccacgagtcccggcagggcctccgcgagttcgtcgccgagatcgcgtccatcgggaggctccgccaccgcaacctcgtggtggcggggcggcggccgatcgagccgcgggcgccgccggaggagctcgtgctggcggagtgggcgtgggagaggtacgccgccggcgaggtgggggcggtggtggacgcgaggctgcgcggggagttcgacgccagcgaggcggaggcggcggtgaaggtcgcgctctggtgctcgcacccggcgccggcggtgcggccgacgatgagggaggtggcgaggtacctcgacgccggcggcgcggcggaggtgccggagccgccgccgccgccgcctcccccgccggtgagctccggcgaggtcggctactacgacttcgtgcactcgtacccgacgtcgtcgtacgagagggcggcggcggcggcggacggcgtgacgcagacgtcggtggccacgttcccctactcgccgctgtcgatgaggtcatcccacgtcagcgtatga
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| Protein seq | MRHLAVVLLLLLLAALAASQEFTYSGFRNGGGGGGAGNSPNLTLNGVTELRPDGILRLTNETSRLIGHAFYPSPLRLLAGGAAVSFSTEFAFAVVPEYPKLGGHGLAFVVAPDPRLPGALPSQYLGLLSAADVGNATNHVLAVEFDTVQDFEFGDINDNHVGVDLNSLVSNASASAAPVNLKSGDTIVAWVDYDGGAKLLNVSIAAASASKPASPLISFHVDLSPIFLDQMFVGFSASTGLLASSHYLMGWSFKLGGGAAPPLDVPSLPSLPRPAAGGKNRTSAILAAAFSAFVALVALAGAAAYAAHRYKNRDVVEPWELDYGPHRYSYAELRRATRGFRDRELLGAGGFGKVYRGVLPGKPPRTVVAVKRVSHESRQGLREFVAEIASIGRLRHRNLVVAGRRPIEPRAPPEELVLAEWAWERYAAGEVGAVVDARLRGEFDASEAEAAVKVALWCSHPAPAVRPTMREVARYLDAGGAAEVPEPPPPPPPPPVSSGEVGYYDFVHSYPTSSYERAAAAADGVTQTSVATFPYSPLSMRSSHVSV |
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| Function | L-type lectin-domain containing receptor kinase S.4 [UniProtKB/Swiss-Prot:Q9M2S4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0018090 | OsLaMu_12g0018090.01 | Chr12 | 23437759 | 23440350 | - | NAM | ||
| CDS seq | atgcgacacctcgccgtcgtcctcctcctcctcctcctcgccgccctcgccgcctcccaggaattcacctactccggcttccgcaacggcggcggcggcggcggcgccgggaacagcccgaacctgacgctgaacggcgtgaccgagctccggccggacggcatcctgcggctcaccaacgagacgtcgcggctcatcggccacgcgttctacccgtcccccctccgcctcctcgccggcggcgcggcggtgtcgttctcgacggagttcgcgttcgcggtggtgccggagtatccgaagctgggcggccatggcctcgcgttcgtcgtcgcgcccgacccgcgcctccccggcgcgctgccgagccagtacctggggctgctcagcgccgccgacgtcggcaacgccaccaaccacgtcctcgcggtggagttcgacaccgtgcaggacttcgagttcggcgacatcaatgacaaccacgtcggcgtcgacctcaacagcctcgtctccaacgcctccgcctccgccgcgccggtcaacctcaagtccggcgacaccatcgtcgcctgggtcgactacgacggcggcgcgaagctactgaacgtctccatcgccgccgcgtcggcgtcgaagccggcgtcgccgctcatctcgttccacgtcgacctgtccccgatcttcctcgaccagatgttcgtcggcttctcggcgtccacgggcctcctcgcgagctcccactacctcatgggctggagcttcaagctcggcggcggcgccgcgccgccgctcgacgtcccctccctcccgtcgctgccccgccccgccgccggcggcaagaaccgcacgtcggcgatcctcgccgcggcgttctcggcgttcgtcgcgctcgtcgccctcgccggcgccgccgcctacgccgcccaccggtacaagaaccgcgacgtggtcgagccatgggagctcgactacgggccacaccgctacagctacgccgagctgcggcgcgccacgcgcgggttccgcgaccgcgagctcctcggcgccggcgggttcggcaaggtgtaccgcggtgtgctcccggggaagccgccgcgcacggtggtcgccgtgaagcgcgtctcccacgagtcccggcagggcctccgcgagttcgtcgccgagatcgcgtccatcgggaggctccgccaccgcaacctcgtggtggcggggcggcggccgatcgagccgcgggcgccgccggaggagctcgtgctggcggagtgggcgtgggagaggtacgccgccggcgaggtgggggcggtggtggacgcgaggctgcgcggggagttcgacgccagcgaggcggaggcggcggtgaaggtcgcgctctggtgctcgcacccggcgccggcggtgcggccgacgatgagggaggtggcgaggtacctcgacgccggcggcgcggcggaggtgccggagccgccgccgccgccgcctcccccgccggtgagctccggcgaggtcggctactacgacttcgtgcactcgtacccgacgtcgtcgtacgagagggcggcggcggcggcggacggcgtgacgcagacgtcggtggccacgttcccctactcgccgctgtcgatgaggtcatcccacgtcagcgtatga
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| Protein seq | MRHLAVVLLLLLLAALAASQEFTYSGFRNGGGGGGAGNSPNLTLNGVTELRPDGILRLTNETSRLIGHAFYPSPLRLLAGGAAVSFSTEFAFAVVPEYPKLGGHGLAFVVAPDPRLPGALPSQYLGLLSAADVGNATNHVLAVEFDTVQDFEFGDINDNHVGVDLNSLVSNASASAAPVNLKSGDTIVAWVDYDGGAKLLNVSIAAASASKPASPLISFHVDLSPIFLDQMFVGFSASTGLLASSHYLMGWSFKLGGGAAPPLDVPSLPSLPRPAAGGKNRTSAILAAAFSAFVALVALAGAAAYAAHRYKNRDVVEPWELDYGPHRYSYAELRRATRGFRDRELLGAGGFGKVYRGVLPGKPPRTVVAVKRVSHESRQGLREFVAEIASIGRLRHRNLVVAGRRPIEPRAPPEELVLAEWAWERYAAGEVGAVVDARLRGEFDASEAEAAVKVALWCSHPAPAVRPTMREVARYLDAGGAAEVPEPPPPPPPPPVSSGEVGYYDFVHSYPTSSYERAAAAADGVTQTSVATFPYSPLSMRSSHVSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.124253 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0574700 | RBH | 0.085684 | 0.0 | 0.158709 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38610 | RBH | 0.095398 | 0.129737 | 0.033112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0574700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018180 | RBH | 0.0 | 3.603901 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018330 | RBH | 0.0 | 0.966124 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018700 | RBH | 0.0 | 0.416407 | 0.617503 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018010 | RBH | 0.0 | 0.151193 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017610 | RBH | 0.0 | 0.000000 | 1.371062 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0315000 | RBH | 0.906267 | 6.444033 | 0.198013 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017460 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0345800 | RBH | 0.9291905 | 6.737452 | 0.28165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017690 | RBH | 0.092052 | 0.104893 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017960 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017880 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017930 | RBH | 0.0 | 0.0 | 0.213962 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001830 | SBH | 0.020082 | 0.236248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017840 | RBH | 0.0 | 0.000000 | 0.178056 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017510 | RBH | 0.0 | 1.890030 | 0.000000 |
