Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0015950 | OGI:12014740 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:21299931-21300920 | ||||||||
| Gene Symbol | MSL41, OsMSL41 | ||||||||||
| DNA seq | atgacaggcatggctcaaaatgtgccttcgaagggtgttaaaatgcccatggactctgctgattggaatgactacaacactagagttgtctgtgagatttttgttgagcaagtagctgcgggtaatcgtccaaatacccatttatctaatcctgggtatgatgaagtcattgagaaatttgcagtaagaacaggtttaaggtacactaggcttcaaattaagaataagtgggataagcatagggttgagtacaattgttggaaaaagttgacatctcaaacaggattaggatgggataacacaaaggaaattgttacagctactgcggaacgttggaagcaactgaaaggagtaagtagttgaaaatattgtgttaaattgataactattgtgccaaattaattgttctaaaccattttacaatgccatgtcatgtaggatataccaggatgcaccaagtttatgaaagctggcttgcaaaatgaagagctactgcagaaaatgtttgaagatattcgcaataccggtgccgaccattggtctttagggcaaagcaccataccaacacccaccaatgaggcaattcatattgctgatgataatgagattgatgaagagacggaggatgatgaaccaagtgcaaaacgaaagagaggtggtggctcaaaggtggataagtccaaaaagagcaagagtggatcccaaaagatggtagaggagatgtccaagagtaatgaactctctgcacagactttgtcatccattcagtccttcactaaaacaagagaggatcctccgggttgttctataaaggatgttatggctttggtggaggaatgttgtgctgttgaagggacaaatgagcatttcattgcaactgaaatatttatcaagaaggatcaaagggaaatgtttgttaattctttgcgcactcctgcaggtcgctttgcatggcttaagaagaagtatgaagtgaagtacggaaattag
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| CDS seq | atgacaggcatggctcaaaatgtgccttcgaagggtgttaaaatgcccatggactctgctgattggaatgactacaacactagagttgtctgtgagatttttgttgagcaagtagctgcgggtaatcgtccaaatacccatttatctaatcctgggtatgatgaagtcattgagaaatttgcagtaagaacaggtttaaggtacactaggcttcaaattaagaataagtgggataagcatagggttgagtacaattgttggaaaaagttgacatctcaaacaggattaggatgggataacacaaaggaaattgttacagctactgcggaacgttggaagcaactgaaaggagatataccaggatgcaccaagtttatgaaagctggcttgcaaaatgaagagctactgcagaaaatgtttgaagatattcgcaataccggtgccgaccattggtctttagggcaaagcaccataccaacacccaccaatgaggcaattcatattgctgatgataatgagattgatgaagagacggaggatgatgaaccaagtgcaaaacgaaagagaggtggtggctcaaaggtggataagtccaaaaagagcaagagtggatcccaaaagatggtagaggagatgtccaagagtaatgaactctctgcacagactttgtcatccattcagtccttcactaaaacaagagaggatcctccgggttgttctataaaggatgttatggctttggtggaggaatgttgtgctgttgaagggacaaatgagcatttcattgcaactgaaatatttatcaagaaggatcaaagggaaatgtttgttaattctttgcgcactcctgcaggtcgctttgcatggcttaagaagaagtatgaagtgaagtacggaaattag
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| Protein seq | MTGMAQNVPSKGVKMPMDSADWNDYNTRVVCEIFVEQVAAGNRPNTHLSNPGYDEVIEKFAVRTGLRYTRLQIKNKWDKHRVEYNCWKKLTSQTGLGWDNTKEIVTATAERWKQLKGDIPGCTKFMKAGLQNEELLQKMFEDIRNTGADHWSLGQSTIPTPTNEAIHIADDNEIDEETEDDEPSAKRKRGGGSKVDKSKKSKSGSQKMVEEMSKSNELSAQTLSSIQSFTKTREDPPGCSIKDVMALVEECCAVEGTNEHFIATEIFIKKDQREMFVNSLRTPAGRFAWLKKKYEVKYGN |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0015950 | OsLaMu_12g0015950.01 | Chr12 | 21299931 | 21300920 | + | NAM | ||
| CDS seq | atgacaggcatggctcaaaatgtgccttcgaagggtgttaaaatgcccatggactctgctgattggaatgactacaacactagagttgtctgtgagatttttgttgagcaagtagctgcgggtaatcgtccaaatacccatttatctaatcctgggtatgatgaagtcattgagaaatttgcagtaagaacaggtttaaggtacactaggcttcaaattaagaataagtgggataagcatagggttgagtacaattgttggaaaaagttgacatctcaaacaggattaggatgggataacacaaaggaaattgttacagctactgcggaacgttggaagcaactgaaaggagatataccaggatgcaccaagtttatgaaagctggcttgcaaaatgaagagctactgcagaaaatgtttgaagatattcgcaataccggtgccgaccattggtctttagggcaaagcaccataccaacacccaccaatgaggcaattcatattgctgatgataatgagattgatgaagagacggaggatgatgaaccaagtgcaaaacgaaagagaggtggtggctcaaaggtggataagtccaaaaagagcaagagtggatcccaaaagatggtagaggagatgtccaagagtaatgaactctctgcacagactttgtcatccattcagtccttcactaaaacaagagaggatcctccgggttgttctataaaggatgttatggctttggtggaggaatgttgtgctgttgaagggacaaatgagcatttcattgcaactgaaatatttatcaagaaggatcaaagggaaatgtttgttaattctttgcgcactcctgcaggtcgctttgcatggcttaagaagaagtatgaagtgaagtacggaaattag
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| Protein seq | MTGMAQNVPSKGVKMPMDSADWNDYNTRVVCEIFVEQVAAGNRPNTHLSNPGYDEVIEKFAVRTGLRYTRLQIKNKWDKHRVEYNCWKKLTSQTGLGWDNTKEIVTATAERWKQLKGDIPGCTKFMKAGLQNEELLQKMFEDIRNTGADHWSLGQSTIPTPTNEAIHIADDNEIDEETEDDEPSAKRKRGGGSKVDKSKKSKSGSQKMVEEMSKSNELSAQTLSSIQSFTKTREDPPGCSIKDVMALVEECCAVEGTNEHFIATEIFIKKDQREMFVNSLRTPAGRFAWLKKKYEVKYGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0207200 | RBH | 0.153832 | 0.211287 | 0.503558 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006660 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001120 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0280900 | RBH | 0 | 0.0024985 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0313800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020400 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0048540 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001300 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001250 | SBH | 0.0 | 0.0 | 0.0 |
