Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0014940 | OGI:12052850 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:20191202-20194352 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggactgtaatccctatcgtttcatggagagcattacaaacattggctgatgatcttggtggtgaccttgccataaaaattaaattacacaccaacaaattaacatttacccatcctgcttactgcattccttaattaattaccaatttaccacaccctatcccacattttacaacctttttcccgatcacgacgacgccggcggcgccgtcgccggcgaggagggcgacgaccacacaaaacctcgtcttcccgcgcgcgcgtgatcgatcacgacgccggcggcggcgaggatgggtgggcggcgtcgaagagcgcctccatctcctcgaggctcctccccttggtctccgggaggcaggcgtagacgaacacccacgccgccgcggagcacgccgcgaagaggtagaacgtgccggccatgcccgccgcctcgtacagcgagatgaagctcatccccaccgccgcgctcatcacccggttcgccgccgtcccgattcccgtgccctgcgcccgcagccgcagcggcaggatctccgacccgtacatccatatcaccggcccgaaccccagcgagaacgtcgccatgaacgccgccgccgccgccacgctcgtcgccgccgcccaccactcggagccggagccggaagacgacgacacgcgcagggagaagccgaggacgaggagcgacacggccatgccgcccgcgctggagagcagcatcgggcggcggccgaggcggtcggcgaggaagagcggcacgacgatggaggcggtcttggtggcgccgaggaggacggtggcgccgagcaccgcgcgctccgacgtcacgccgacgtggttgaacacccgcggcgcgtacagcaccatcgccgccacgcccgacgcctgctggaagaactgcaggccgaggatggcgaacagcacgcgccgcaccgccggcgtcggccggaccaggatgtcgcgccacacgcccgttgacgctccgccgccggcggcggcggcggcggaggacagctgctgcttcgtcgcgctctccttgacggacgacacgatctcctggaggcggcgctcggcgagggcggcgtcgccgccggtggtgcggacgagcacctggcgcgcgtcgtcgtggtggccgtgcaggacgagccagcgcggcgtctccggcatggcgagcagcgcggcggcggcgaggaagagcggcgggacggcgccgatgccgatcatgaggcgccagttgagcgacatggggaggccggcgagcgcgaagtcggcgatgtagctcagcaggatgccggagttgccggcgatctgacgtggcagccatcaacacaaagctcagctcagcatcaatttcactcaaaacaacccatttcgcaaaattttactccattcgttttatattataagtcatttgaattgttttgaactttttcttagttaaattttgttaacttagattaaatttataaaaaaATatagttgtatatttaacacaaaacaaacatatattaatatattcaatgttagattttaacaaaaataagttgatattttagatgttgctaaattttttataaacttgattaaacttaataaaatttaactaagaaaaagataaagatgaaatgagttataatatgaaacagaggagtactactattgtctaaaatgatacgtataaatcaacatttataaatttccaaccaaattttattgacattataataaggaaaggaaaatgtatcaaatgcgtgacaaaatacgtagaggaattgaattcgtatttctatgcttaattaaagttaaattcagtttagtggactcattcacagccagataaattacactttatgctagtacaatctaatttaattttgaaccatgcataattgccacggtaaaatctcattaaaaagcattaaatttccggcgtgttcatgcatgtgcccctcaggtcccaacaaatctcgtactagaatatattgttaagcagagaagatcgatttgatttcgttttaattaatccattttagattaggatgcctcagcttgacgtggctcagctaagtatctatctaatcacatattaataacactaaacctaacctctttctctttctcgggtaattaaccctacgtatttcttgatctctcgatcgaaaccacaatagttagtgtatcaactgaacttgatctgataattagagattactaagtatatttacttcctaatgagcaattagtcatgtggagaagaagtttaattgaacttaattttagaagattgattagtactccctaattagggattaggcatgcggagaaagaagtaattagttagcaacatgcAaaaaaaaaaaacacacgtgccacaacgcacctcggggatggaggcgaggaagccgcgcgacgacggcggcgcgatctcggcgatgtagacgggcgccacgacgaggccgaacccgcaggcgacgccggcgacgagctggccggccatgagcgcggcgtagccgctcgccgcggcggtggcggcggagccggcgaggaacatggccgccgacagcgcgatggtgcggcggcgccccgcgcggtcgcacgcccaccccgccgccagcgagccgacgagggagtagatgctcgtcgccccgatgagcacctcgatctccgcgtcgctcacgcccaggtccagctgcacgaacttctgcgccccgctcatcacgccccgatctgtgcgcgtaccaaaaagaagaggaaaaccttagcaataagcggccatggcggctcggcggcggcgagcggatcgatttgggatttgggtagattactgtagccgtagatgatggaggtgagggaggcggcgacggcgcaggcgagggcgaaggaggagccggcggcggggtggctgttgtcgacgtcgtggtggtcggcgtcggcggcggcggcgaggagcggcgactcgacgtcgtcgtcattcttcatggctgggtgggttggtgaagctaggtgggcgcgcgccggcgagcgcggctggggggtggtggtgcttatgaagcgaggcgcgcgacacgcgagggcgaggcgaggagagcgcgcggcgtggcgcggcgcggcgtggcgtggcgcggcgcggcgaggaaacgtggacctct
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| CDS seq | atgaagaatgacgacgacgtcgagtcgccgctcctcgccgccgccgccgacgccgaccaccacgacgtcgacaacagccaccccgccgccggctcctccttcgccctcgcctgcgccgtcgccgcctccctcacctccatcatctacggctacaatcggggcgtgatgagcggggcgcagaagttcgtgcagctggacctgggcgtgagcgacgcggagatcgaggtgctcatcggggcgacgagcatctactccctcgtcggctcgctggcggcggggtgggcgtgcgaccgcgcggggcgccgccgcaccatcgcgctgtcggcggccatgttcctcgccggctccgccgccaccgccgcggcgagcggctacgccgcgctcatggccggccagctcgtcgccggcgtcgcctgcgggttcggcctcgtcgtggcgcccgtctacatcgccgagatcgcgccgccgtcgtcgcgcggcttcctcgcctccatccccgagatcgccggcaactccggcatcctgctgagctacatcgccgacttcgcgctcgccggcctccccatgtcgctcaactggcgcctcatgatcggcatcggcgccgtcccgccgctcttcctcgccgccgccgcgctgctcgccatgccggagacgccgcgctggctcgtcctgcacggccaccacgacgacgcgcgccaggtgctcgtccgcaccaccggcggcgacgccgccctcgccgagcgccgcctccaggagatcgtgtcgtccgtcaaggagagcgcgacgaagcagcagctgtcctccgccgccgccgccgccggcggcggagcgtcaacgggcgtgtggcgcgacatcctggtccggccgacgccggcggtgcggcgcgtgctgttcgccatcctcggcctgcagttcttccagcaggcgtcgggcgtggcggcgatggtgctgtacgcgccgcgggtgttcaaccacgtcggcgtgacgtcggagcgcgcggtgctcggcgccaccgtcctcctcggcgccaccaagaccgcctccatcgtcgtgccgctcttcctcgccgaccgcctcggccgccgcccgatgctgctctccagcgcgggcggcatggccgtgtcgctcctcgtcctcggcttctccctgcgcgtgtcgtcgtcttccggctccggctccgagtggtgggcggcggcgacgagcgtggcggcggcggcggcgttcatggcgacgttctcgctggggttcgggccggtgatatggatgtacgggtcggagatcctgccgctgcggctgcgggcgcagggcacgggaatcgggacggcggcgaaccgggtgatgagcgcggcggtggggatgagcttcatctcgctgtacgaggcggcgggcatggccggcacgttctacctcttcgcggcgtgctccgcggcggcgtgggtgttcgtctacgcctgcctcccggagaccaaggggaggagcctcgaggagatggaggcgctcttcgacgccgcccacccatcctcgccgccgccggcgtcgtga
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| Protein seq | MKNDDDVESPLLAAAADADHHDVDNSHPAAGSSFALACAVAASLTSIIYGYNRGVMSGAQKFVQLDLGVSDAEIEVLIGATSIYSLVGSLAAGWACDRAGRRRTIALSAAMFLAGSAATAAASGYAALMAGQLVAGVACGFGLVVAPVYIAEIAPPSSRGFLASIPEIAGNSGILLSYIADFALAGLPMSLNWRLMIGIGAVPPLFLAAAALLAMPETPRWLVLHGHHDDARQVLVRTTGGDAALAERRLQEIVSSVKESATKQQLSSAAAAAGGGASTGVWRDILVRPTPAVRRVLFAILGLQFFQQASGVAAMVLYAPRVFNHVGVTSERAVLGATVLLGATKTASIVVPLFLADRLGRRPMLLSSAGGMAVSLLVLGFSLRVSSSSGSGSEWWAAATSVAAAAAFMATFSLGFGPVIWMYGSEILPLRLRAQGTGIGTAANRVMSAAVGMSFISLYEAAGMAGTFYLFAACSAAAWVFVYACLPETKGRSLEEMEALFDAAHPSSPPPAS |
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| Function | Polyol transporter 5 [UniProtKB/Swiss-Prot:Q8VZ80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0014940 | OsLaMu_12g0014940.01 | Chr12 | 20191202 | 20194352 | - | NAM | ||
| CDS seq | atgaagaatgacgacgacgtcgagtcgccgctcctcgccgccgccgccgacgccgaccaccacgacgtcgacaacagccaccccgccgccggctcctccttcgccctcgcctgcgccgtcgccgcctccctcacctccatcatctacggctacaatcggggcgtgatgagcggggcgcagaagttcgtgcagctggacctgggcgtgagcgacgcggagatcgaggtgctcatcggggcgacgagcatctactccctcgtcggctcgctggcggcggggtgggcgtgcgaccgcgcggggcgccgccgcaccatcgcgctgtcggcggccatgttcctcgccggctccgccgccaccgccgcggcgagcggctacgccgcgctcatggccggccagctcgtcgccggcgtcgcctgcgggttcggcctcgtcgtggcgcccgtctacatcgccgagatcgcgccgccgtcgtcgcgcggcttcctcgcctccatccccgagatcgccggcaactccggcatcctgctgagctacatcgccgacttcgcgctcgccggcctccccatgtcgctcaactggcgcctcatgatcggcatcggcgccgtcccgccgctcttcctcgccgccgccgcgctgctcgccatgccggagacgccgcgctggctcgtcctgcacggccaccacgacgacgcgcgccaggtgctcgtccgcaccaccggcggcgacgccgccctcgccgagcgccgcctccaggagatcgtgtcgtccgtcaaggagagcgcgacgaagcagcagctgtcctccgccgccgccgccgccggcggcggagcgtcaacgggcgtgtggcgcgacatcctggtccggccgacgccggcggtgcggcgcgtgctgttcgccatcctcggcctgcagttcttccagcaggcgtcgggcgtggcggcgatggtgctgtacgcgccgcgggtgttcaaccacgtcggcgtgacgtcggagcgcgcggtgctcggcgccaccgtcctcctcggcgccaccaagaccgcctccatcgtcgtgccgctcttcctcgccgaccgcctcggccgccgcccgatgctgctctccagcgcgggcggcatggccgtgtcgctcctcgtcctcggcttctccctgcgcgtgtcgtcgtcttccggctccggctccgagtggtgggcggcggcgacgagcgtggcggcggcggcggcgttcatggcgacgttctcgctggggttcgggccggtgatatggatgtacgggtcggagatcctgccgctgcggctgcgggcgcagggcacgggaatcgggacggcggcgaaccgggtgatgagcgcggcggtggggatgagcttcatctcgctgtacgaggcggcgggcatggccggcacgttctacctcttcgcggcgtgctccgcggcggcgtgggtgttcgtctacgcctgcctcccggagaccaaggggaggagcctcgaggagatggaggcgctcttcgacgccgcccacccatcctcgccgccgccggcgtcgtga
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| Protein seq | MKNDDDVESPLLAAAADADHHDVDNSHPAAGSSFALACAVAASLTSIIYGYNRGVMSGAQKFVQLDLGVSDAEIEVLIGATSIYSLVGSLAAGWACDRAGRRRTIALSAAMFLAGSAATAAASGYAALMAGQLVAGVACGFGLVVAPVYIAEIAPPSSRGFLASIPEIAGNSGILLSYIADFALAGLPMSLNWRLMIGIGAVPPLFLAAAALLAMPETPRWLVLHGHHDDARQVLVRTTGGDAALAERRLQEIVSSVKESATKQQLSSAAAAAGGGASTGVWRDILVRPTPAVRRVLFAILGLQFFQQASGVAAMVLYAPRVFNHVGVTSERAVLGATVLLGATKTASIVVPLFLADRLGRRPMLLSSAGGMAVSLLVLGFSLRVSSSSGSGSEWWAAATSVAAAAAFMATFSLGFGPVIWMYGSEILPLRLRAQGTGIGTAANRVMSAAVGMSFISLYEAAGMAGTFYLFAACSAAAWVFVYACLPETKGRSLEEMEALFDAAHPSSPPPAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.330717 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0512100 | RBH | 0.318088 | 0.253610 | 1.988557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32760 | RBH | 0.230096 | 0.250827 | 0.574908 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0512100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014980 | RBH | 0.0 | 2.564648 | 0.230518 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015120 | RBH | 0.180442 | 2.733187 | 1.224053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015020 | RBH | 0.0 | 5.453507 | 1.698018 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014830 | RBH | 0.035217 | 0.257050 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014350 | RBH | 1.051567 | 3.396131 | 2.300278 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0265300 | RBH | 0.697703 | 2.3322195 | 0.6492405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014560 | RBH | 0.0 | 0.000000 | 0.496900 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294900 | RBH | 18.880525 | 8.713324 | 0.2891755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014730 | RBH | 0.083261 | 0.182977 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014880 | RBH | 0.0 | 6.351421 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014770 | RBH | 0.0 | 0.0 | 0.574474 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015050 | RBH | 2.008069 | 1.480691 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014840 | RBH | 0.0 | 0.757586 | 0.442995 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014620 | RBH | 0.0 | 13.169889 | 0.779072 |
