Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0011490 | OGI:12037960 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:14538213-14539135 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatttaaataatcaataatcatccaaacattagtgaaagtagtactatatatatatgtgtacaaacattacttctgccaaaccacggttagccacatagtagtaattaatcagctagtcagcttacacttgtctacacgcggcgagcggccatggacgcacctcgccggcggagcaacggcgcgtgggagatcaacctggtgcggcggagcccggccacggcgcggaccgaccgctgctcgaggctgctgctgctgtggagcgggttcgtcggcgtcgtcgtcgtgctctacctgttcgtcggccacgtctgggcgtccgtcgccacggcggtgctcctcgccgccgcgggctggttcacctggtactacttcggcgcggcgccggcgccgccggtgctccccgatcatcatcagccggcggcgccggtggaggcccgagggctcagccaggaggacatcgaggccatcccggcgttcgagtacaggaggggatcatcgggcagcggggtggcgcagtgcgcggtgtgcatcgccgccgtgaaggacggggacacggtgcggcggctgccggcgtgcggccacgcgttccacgcgccgtgcgtggacgggtggctgcgcgaccacgcgacgtgccccatgtgccgcgccgacgtcgtcaaggtcgccggagagacgacgccggcgacggaggaggagccgcccgtgtagccgagcccgcgcaagttgaggcatacgacaagtcaacaaaacatgcgccggaatggaaacgtgtgcttccatccctgcttgtttcttttttttccacttcgtttgactttctgttttaagtgtcagcttggtatagtatggatctgatatagtgtttactaacaaggtgtatatgcgatacaattaacaaaaaagttgtgaaaagtgagtgtc
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| CDS seq | atggacgcacctcgccggcggagcaacggcgcgtgggagatcaacctggtgcggcggagcccggccacggcgcggaccgaccgctgctcgaggctgctgctgctgtggagcgggttcgtcggcgtcgtcgtcgtgctctacctgttcgtcggccacgtctgggcgtccgtcgccacggcggtgctcctcgccgccgcgggctggttcacctggtactacttcggcgcggcgccggcgccgccggtgctccccgatcatcatcagccggcggcgccggtggaggcccgagggctcagccaggaggacatcgaggccatcccggcgttcgagtacaggaggggatcatcgggcagcggggtggcgcagtgcgcggtgtgcatcgccgccgtgaaggacggggacacggtgcggcggctgccggcgtgcggccacgcgttccacgcgccgtgcgtggacgggtggctgcgcgaccacgcgacgtgccccatgtgccgcgccgacgtcgtcaaggtcgccggagagacgacgccggcgacggaggaggagccgcccgtgtag
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| Protein seq | MDAPRRRSNGAWEINLVRRSPATARTDRCSRLLLLWSGFVGVVVVLYLFVGHVWASVATAVLLAAAGWFTWYYFGAAPAPPVLPDHHQPAAPVEARGLSQEDIEAIPAFEYRRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGHAFHAPCVDGWLRDHATCPMCRADVVKVAGETTPATEEEPPV |
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| Function | RING-H2 finger protein ATL11 [UniProtKB/Swiss-Prot:Q84W40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0011490 | OsLaMu_12g0011490.01 | Chr12 | 14538213 | 14539135 | + | NAM | ||
| CDS seq | atggacgcacctcgccggcggagcaacggcgcgtgggagatcaacctggtgcggcggagcccggccacggcgcggaccgaccgctgctcgaggctgctgctgctgtggagcgggttcgtcggcgtcgtcgtcgtgctctacctgttcgtcggccacgtctgggcgtccgtcgccacggcggtgctcctcgccgccgcgggctggttcacctggtactacttcggcgcggcgccggcgccgccggtgctccccgatcatcatcagccggcggcgccggtggaggcccgagggctcagccaggaggacatcgaggccatcccggcgttcgagtacaggaggggatcatcgggcagcggggtggcgcagtgcgcggtgtgcatcgccgccgtgaaggacggggacacggtgcggcggctgccggcgtgcggccacgcgttccacgcgccgtgcgtggacgggtggctgcgcgaccacgcgacgtgccccatgtgccgcgccgacgtcgtcaaggtcgccggagagacgacgccggcgacggaggaggagccgcccgtgtag
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| Protein seq | MDAPRRRSNGAWEINLVRRSPATARTDRCSRLLLLWSGFVGVVVVLYLFVGHVWASVATAVLLAAAGWFTWYYFGAAPAPPVLPDHHQPAAPVEARGLSQEDIEAIPAFEYRRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGHAFHAPCVDGWLRDHATCPMCRADVVKVAGETTPATEEEPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.502349 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0432600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g24490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0432600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011400 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011540 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011340 | RBH | 0.0 | 0.187490 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011090 | RBH | 0.0 | 7.457556 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0192800 | RBH | 0.0387345 | 8.033666 | 0.252557 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011300 | RBH | 0.0 | 0.690053 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0216700 | RBH | 0.3068085 | 21.4906435 | 0.0122465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011310 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011270 | RBH | 0.0 | 0.963627 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011020 | RBH | 0.0 | 5.065835 | 0.0 |
