Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0010230 | OGI:12031710 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:12187601-12191750 | ||||||||
| Gene Symbol | CYCA1;3, cycA1;3, CycA1;3, CYCA1-3 | ||||||||||
| DNA seq | ttcacaagagcaacacgaacagagactctatcatacatcaacctaggagacgcccaggttggcagctaatatcaaacaagatgtttaaagctttgctgcaggactccgatgtacaaagtactgaaaaccatgatcatctaggtacagggaaagaatagaagaaagcacatcagtaccataaaagttaccacacacagcagaagcatcgatctatctacactcagccaaaccacctgaaagaacaggggggcaagcagcatgtccttgcatcaagcttatctgaacggtctacggcacaacctggcataggtgcctctggaggaagaattcagtcagcaactgtaactatccttggtttatttttttctagttcagcatgttgatcgcgaaagaatcggtcggtattgagggtgggcagggcttcttcgccacaaatttgtactgcagaaacaaaggtacaggaggcagcattaggaacagtacagataagaagaaatggggaggatatgcagtttataccttatgttgggtatacttctccctgattgcaggaaggttactcccaggaccaacacagaaaaggcgtgcaatgccttaacgcagtcgcttaactctgacgacttgtattgtgtgtagtgagcaagtggaattctgcttccaatttacaatgagaagcatatgttagctcttgtaatttttttatttgaatgttgatataaaagatgtatggaaagttcaatatgatgatgccaccacgtacccaaggtgctttgctggctgcagtatgaatttggccaggaaatatgatgccgctactagtgaaggaggtaagaaagtagattgtactccagcgtgatagctcagcaacataattggctaggaactcaagatgcaatgctggatcctgcacgatgaaaagctgttaatgcaatgcagcatataaatagtatgaaattgcagcaagcaggatgattaagagagcagcacctcatcagatacttgtgcaacacggacaaatctcctgttgtaggcaagaagatagttattagagttcgattcattccagcattatagacatcgatgagatgaaaagaatagaacctcaaaagcattttgctgtaggtgcagtcatttcaaacttcaggtaattcaggacagaagcttccatttccaaaacctgacaatctatgtgttagtcatggagataaacatagaaatgttcacagatatgcaaaacaaacctcatctctgaagtatgtgtttgtcagttatatagcagaattcttctacttgaggtgcacatatctcctcgtattttctgatataggaacaagccaaaatcagtacacaaaactcagatgcaaactgagaacacatttaaaaaattgctatcagatcttacgcagcaataagcatacaagcaactccaagtaattgcagtctttgacgattgatctcattgccagaaagataacggtcaatgtagttaactgtcaggtataatgtatcaggaacaagacgatttcttcagcgacctgcacaaaggaaaagcacaaatagagtggtaagtaacgattgtggtctttaggctccaatcaactaaaaaaatttgttcggtataaaagcttacttccacaagccagtctatcaggatcgctctcatgcttgggtttacatccttttggagtgtttccataaaatcggttgatggatgttctggtctgcttcaagtcaaatagaaaatcacaatgtaaatatgaaattcaacctagatttgaaaccactgtgctcaggtcagattaattgtcatttgatcaaactgactgcagtagtgcagtccatgtcacagcaaaaataatgagcaattgaaaaatacttcaagagcattgattacaacaattgaaatgtatcaattcatcggttcagtcaatgctttaagaagataactccattacaatttctccatattatactgtgcttctactggttctataaggaatttcaatatgatggccattaaatggaacccactattcagaaaaaaaaagtattcaagaatgttttatgtaaggtgtttacataatatgcagaacaaaactactgaaaattgatggtcacaaagcatgtctggtagatgataaggtgcaccaacaaagcgaaaagcagAaaagaacggattgtggtgaaatgtgaaaaatatcctgataaattacattggaataatgccttatatcagtgatgtgcacttattctcttcttaatttatggtctcatcaaagtaaactttttttacttgtgtttcatatggatgcaatcaagtctcaaatcatgaggaagcaaaacaaagccttcctatgaaaacatactacaataaggtgctcaagggaaatgttttcagagaaataaggtttagtcaagaatgtattacctcggcctcgcgcaagtgcatgtagatatcagaagcaagagtagcacacaactgcggatcctcgtagttattgtcaacatcacaaatttggtcgaTttccattggggaaggagcatccttcttccacttagtttctgcgaaacaaacaaGggaaaagatcaatcaaccattccaatagaatgcaccatatagcacaaatttttctagctataactgtgcatttcagcaaccaaaacacaccttcaacatctctatcctctgagatacgcaggttctcgtttgctcttcgctgcaaggaacctagaactgaggaggaatccccattatcAatatactcaaagtctgggcttttcattgagtcgcacgtcgacatcgtctcatcaaccgaaactgaatctcctgaatgcataggggagacgaagctgctgcagggtacagtgacaggtgcaggtgcagcagttggaacaattctaagcactttaggaggaagaactgactccttctgtggggcgctctcatggcgggatatggccgaagctggcttggtggaagctgatttcaccgccgagacccgattcgtgcccacattgcggccactggccaaagatcccttcttcacaggtgcagcccaggtagctgaattaaatttctgcaggaggattgaagacaagaaatcaatttagaacttatatttcaatctgttcatttgggattccagaccacaagcatgaaaaggaacaaatatttattagaaacattagcagcacgcaagtatcatattaccaatagaagattccaaagcaagcaaacatacaaaacacttagcgaataccaagaaagcttttattttgaacttctgaaggtgccaataaaccctcaagtgaatttagcctgttgacctggatgctccccaagaaatcaatcaatcaattaaccatgaaaagaaaccagaaatcagcaagaaaaatcttgtggattggaataggagaatcctcaaatcagcaaggaagaatgtggcagaggtccaaatttgaatgtgaagagcactgaaaaaccaaaggcaagaatatattggggattggaagaggagaatcgtttgtaggctaaccaaggagaaattgaagaaatgaaaatcttgttgttggctgaaagaaagaactcaagaagacgaattcaagaaacactatttatatttgcttgaaaccaacagatcgaggcgtatgtcctccacaaacaagatggaaaaaaaccaaaaagaaaaaatcatacacagatcgcttcggccatttccgcatcaacagcgactcacttgtgccccaagaggaaccaagaagcaaaaaaaaaaaaaaaagccacccccaaaccattccaaccgcctcacacaccaaaagatctccacccaaaccgcgcaaagcaaagaacaaatcttggagagaaaaaaaaaggaaaaagaagaagaagaagcagcagcaagcgatccttcacgtaccgcattgttggcggcggcggcaacgttggtgatgttaccgagcgcgacgcgcttcttggccgccgcggcgcccgcggccgccttccctcctccctcccccgccgcgggccgcttcgccgccgacgacgacgacgagcggcgggaggctaggctgctcgacatcggccgacggcaaccaccacctgaaccctcctcctcctgctgctgctgcgagggttgcgagggcggcggcg
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| CDS seq | atgtcgagcagcctagcctcccgccgctcgtcgtcgtcgtcggcggcgaagcggcccgcggcgggggagggaggagggaaggcggccgcgggcgccgcggcggccaagaagcgcgtcgcgctcggtaacatcaccaacgttgccgccgccgccaacaatgcgaaatttaattcagctacctgggctgcacctgtgaagaagggatctttggccagtggccgcaatgtgggcacgaatcgggtctcggcggtgaaatcagcttccaccaagccagcttcggccatatcccgccatgagagcgccccacagaaggagtcagttcttcctcctaaagtgcttagaattgttccaactgctgcacctgcacctgtcactgtaccctgcagcagcttcgtctcccctatgcattcaggagattcagtttcggttgatgagacgatgtcgacgtgcgactcaatgaaaagcccagactttgagtatatTgataatggggattcctcctcagttctaggttccttgcagcgaagagcaaacgagaacctgcgtatctcagaggatagagatgttgaagaaactaagtggaagaaggatgctccttccccaatggaaAtcgaccaaatttgtgatgttgacaataactacgaggatccgcagttgtgtgctactcttgcttctgatatctacatgcacttgcgcgaggccgagaccagaacatccatcaaccgattttatggaaacactccaaaaggatgtaaacccaagcatgagagcgatcctgatagactggcttgtggaagtcgctga
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| Protein seq | MSSSLASRRSSSSSAAKRPAAGEGGGKAAAGAAAAKKRVALGNITNVAAAANNAKFNSATWAAPVKKGSLASGRNVGTNRVSAVKSASTKPASAISRHESAPQKESVLPPKVLRIVPTAAPAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPDFEYIDNGDSSSVLGSLQRRANENLRISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRTSINRFYGNTPKGCKPKHESDPDRLACGSR |
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| Function | Cyclin-A1-3 [UniProtKB/Swiss-Prot:Q0INT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010230 | OsLaMu_12g0010230.02 | Chr12 | 12188656 | 12191750 | - | NAM | ||
| CDS seq | atgtcgagcagcctagcctcccgccgctcgtcgtcgtcgtcggcggcgaagcggcccgcggcgggggagggaggagggaaggcggccgcgggcgccgcggcggccaagaagcgcgtcgcgctcggtaacatcaccaacgttgccgccgccgccaacaatgcgaaatttaattcagctacctgggctgcacctgtgaagaagggatctttggccagtggccgcaatgtgggcacgaatcgggtctcggcggtgaaatcagcttccaccaagccagcttcggccatatcccgccatgagagcgccccacagaaggagtcagttcttcctcctaaagtgcttagaattgttccaactgctgcacctgcacctgtcactgtaccctgcagcagcttcgtctcccctatgcattcaggagattcagtttcggttgatgagacgatgtcgacgtgcgactcaatgaaaagcccagactttgagtatatTgataatggggattcctcctcagttctaggttccttgcagcgaagagcaaacgagaacctgcgtatctcagaggatagagatgttgaagaaactaagtggaagaaggatgctccttccccaatggaaAtcgaccaaatttgtgatgttgacaataactacgaggatccgcagttgtgtgctactcttgcttctgatatctacatgcacttgcgcgaggccgagaccagaacatccatcaaccgattttatggaaacactccaaaaggatgtaaacccaagcatgagagcgatcctgatagactggcttgtggaagtcgctga
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| Protein seq | MSSSLASRRSSSSSAAKRPAAGEGGGKAAAGAAAAKKRVALGNITNVAAAANNAKFNSATWAAPVKKGSLASGRNVGTNRVSAVKSASTKPASAISRHESAPQKESVLPPKVLRIVPTAAPAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPDFEYIDNGDSSSVLGSLQRRANENLRISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRTSINRFYGNTPKGCKPKHESDPDRLACGSR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010230 | OsLaMu_12g0010230.01 | Chr12 | 12187601 | 12191750 | - | NAM | ||
| CDS seq | atgtcgagcagcctagcctcccgccgctcgtcgtcgtcgtcggcggcgaagcggcccgcggcgggggagggaggagggaaggcggccgcgggcgccgcggcggccaagaagcgcgtcgcgctcggtaacatcaccaacgttgccgccgccgccaacaatgcgaaatttaattcagctacctgggctgcacctgtgaagaagggatctttggccagtggccgcaatgtgggcacgaatcgggtctcggcggtgaaatcagcttccaccaagccagcttcggccatatcccgccatgagagcgccccacagaaggagtcagttcttcctcctaaagtgcttagaattgttccaactgctgcacctgcacctgtcactgtaccctgcagcagcttcgtctcccctatgcattcaggagattcagtttcggttgatgagacgatgtcgacgtgcgactcaatgaaaagcccagactttgagtatatTgataatggggattcctcctcagttctaggttccttgcagcgaagagcaaacgagaacctgcgtatctcagaggatagagatgttgaagaaactaagtggaagaaggatgctccttccccaatggaaAtcgaccaaatttgtgatgttgacaataactacgaggatccgcagttgtgtgctactcttgcttctgatatctacatgcacttgcgcgaggccgagaccagaacatccatcaaccgattttatggaaacactccaaaaggatgtaaacccaagcatgagagcgatcctgatagactggcttgtggaagtcgctga
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| Protein seq | MSSSLASRRSSSSSAAKRPAAGEGGGKAAAGAAAAKKRVALGNITNVAAAANNAKFNSATWAAPVKKGSLASGRNVGTNRVSAVKSASTKPASAISRHESAPQKESVLPPKVLRIVPTAAPAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPDFEYIDNGDSSSVLGSLQRRANENLRISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRTSINRFYGNTPKGCKPKHESDPDRLACGSR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0010230 | OsLaMu_12g0010230.03 | Chr12 | 12187601 | 12190682 | - | NAM | ||
| CDS seq | atgaggagatttgtccgtgttgcacaagtatctgatgaggatccagcattgcatcttgagttcctagccaattatgttgctgagctatcacgctggagtacaatctactttcttacctccttcactagtagcggcatcatatttcctggccaaattcatactgcagccagcaaagcaccttggtacaaatttgtggcgaagaagccctgcccaccctcaataccgaccgattctttcgcgatcaacatgctgaactag
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| Protein seq | MRRFVRVAQVSDEDPALHLEFLANYVAELSRWSTIYFLTSFTSSGIIFPGQIHTAASKAPWYKFVAKKPCPPSIPTDSFAINMLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr12 | 12188041 | 12188361 | - | OsLaMu_12g0010230.01 | OsLaMu_12g0010230.03,OsLaMu_12g0010230.01 | All |
| SE | Chr12 | 12188621 | 12188842 | - | OsLaMu_12g0010230.01 | OsLaMu_12g0010230.03,OsLaMu_12g0010230.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074568 | 1.476678 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0298950 | SBH | 0.133810 | 0.307938 | 0.811817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g20324 | RBH | 0.067006 | 0.163688 | 0.274996 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0298950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010250 | RBH | 0.000000 | 0.000000 | 1.086139 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010440 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010410 | RBH | 0.000000 | 0.000000 | 4.888022 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010110 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0161400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010040 | SBH | 0.000000 | 0.000000 | 0.200784 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0181000 | RBH | 4.41812 | 4.563375 | 28.826993 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009950 | SBH | 0.000000 | 0.156203 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010220 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010160 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010110 | SBH | 0.0 | 0.0 | 0.263927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009010 | SBH | 0.000000 | 6.047315 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009970 | RBH | 0.147944 | 0.800406 | 0.768216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009920 | RBH | 0.000000 | 0.000000 | 1.288575 |
