Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0008950 | OGI:12026200 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:9952908-9957707 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttcagtgatatttcttaagggaaaattactctcacagcaatcctttgaaatgggtttgcatgtacatttgaaatttgacactaactgtaatagcagtggatagctgctctgtctttatcaacttctacttgtaatttcagggaccttaataaacctttagtggcttggacttattgtgcattactgcaaaggcactaacttttatatcactataacatgttctcggaactcagaatacaatctctgtgcagatcatcttggcgtccatctactccgggtgataaagatttactgactggagcgtttatcagcagcactcaccatcctatgttagggaggtggtaagcagtttatgtgctttgataaagctggtgttgcttagctcagtttctcctaacccatccacttttcgagcttgtatgctaccccttttagtattgtcaaaatcttgtttcgacatagggtcgctttccgaagtgaaaagttgtgtgaaaagatcagtaggatcttgttcgaacctgttggcgatcagcctttgaaccccaaggtgttcgacgaaatacaaaatcaaaagagagcattttgcaccgcgtaagcttgtagcattttctgatgcatttattaacttaaatagctcggcgatcgtgccatcccacgatcgagcgctctcctcgccatgcgccctacgactccatcatgcgcttcccgactgagccgcgcaatcccaaggcagaaagcacatgtccacatgacgcctactaactccgacgcgctcgcacatgaacaagcatgcgtaagagcccatggtacaaacgcacacgatccccagacacacagacatcatgtaccatgaagaaacgcagagcagaaatgggtacggcgctaactcaacaggaccatatattaaatgtttagctagcttgcactttgtctgaattcccgaatagcactgcaaaatgaagggcaatcataggtcaggtactatcagaatgcaataaacaagcatacaagtaaagctctgcagattgacagtcctatatacgagaggatgaatcaatacctggcttccagcgcttctggtttccgactatgatcagtggctactgaatatgatgctcttcagttccacctccctctgtactgccttttagctgctcctcttcgtcttcctttaccatttcatcttcatagcgccttagaatttcgagagtaagacagcgagtctggatgctggccacgttcctaatggcatcttccaaagctttcacgtcccttgtagtggcatcagaacaatcaagaacgacgattagatgctggaggctggaaaggtgcacaaagctctgctcaaacccaaggttggatgctgctttttgtgcaaacaactcaatagaaagcctttggagttttggcatagcgccaggttcaaacaacaaccaatgcaggcgactatgcctgaacatcaactcctttagacagggaaatccaccacagcctacagtgagtccatcctccccgccttgggggaatattactttaagatagagaagcttgggtatacacccaaggaggttgatatatttctgatcattgcttctagtattatagaagatcacaagataggcaagattagaaagggaaaccatctgctccgaaagttttgatattccaacgccagaaatagaaagctctctgagaccgggagcactactacaacatgaatccatcaatgtatctgaaaacttggttgtaacatgtacatgtaatgattgaaggctatttttacctaactcatcgagagtcatgtaaaaggcgtccttgtacctctcgaaccttgctacatcacctccaaaaggcgtccttatgcgcagataccttagtctggtcagccgacggagctcttgtaaacattttatgctgtactctatgttgtaaaaaagagatagcatctccaaagcttgcaaaaatccaatttcatctggcaatctcattgggtaatcaacaattaggcgctctagtttttgcagtctacaaacacttgacggaatgtttatttcgttgacatgtcctcctccatgaataattagtgtttctagttgctgcagccgtccaatatccttgggcatctcggtaacatttgcaacattgagcttcagatacttcaactggaaaaggtatgttaggctgttaatatgctggctctccaggctcatgcacccatccagaaccaatacccgcagagcatggcatttcttaaattgtggtatttgctccggtttaggactgtcaaagaacagcgaacgaacatgtgagcagttgttcgtaatctccttgactattctattatctgtgccattggatgggaaccaggtcctccgaatcttcttgaaagaactccaatgctgttgttcatgcactattgtgacgaaattctgtccagttgataggctaatgataagatcaagcacaatatcgtggactcggcagcaactggccctaccatcatattcgatataaactggttggatcaagcttctatttataagctcattgaagtagttctctcctacttgctcccgtgtttttcccttcgcttcaatgatgaatccttcagctatccatctccatataagttcttgtctatcaattacataatcctctggatacatgctgagatacaacagacaatttttcaggggataaggaagatcataataactgagcatcaaaatttttctcacttcgacgtctgagtttagtgtaacaccaatagaattgtgcacttgcatccactggtcctctgtatcaggtttgattgatagcaagctagctatggagattatagctaatggtaaaccacgacatttcgatatgatggcatgagagatgtcttccaggtgaggcgggcagcaactatcagaattaaaagctctccggtaaaataatctctgtgaatcttgctcttctagtggctgcatgctgtgaagatagccttcagatgtggtacggctgcatgcttcagctacggcagtgtttcttgttgttgttatgattatactgcccaaattattctctgggaaagcacaattgaccaccttccacgcacctatgtcccaaatgtcatcaacaacaatgaggtacctgcgtacaattaaatttatgatccagtcatcatactttcgcaccaatgtggatgaatgaacatacataaaagctagttaccactcatgtagccatagctaaaagactggtattgatcgaagtacagatgtttttgtggctagaatattacaattaagagtgcaaagtgttttattgggtttgttctagttctagatacaacgatatatgtctgtacatttcggatttgctatatatcttgcgacagaaaattgaagttggaaacttccaaatttaatttgtgctgtcagataggcgttaagattcacgattcacgtgtgggggaggaaaagagaatgtatccgcgcatgggatgaggatcgactcatcaaccgaagctagtggttgtgctagatcgtgattttatttgtaatatattagacctatttctgtatttgaagagaaaaaaaatatgtttgaaacctctatttgctgttatgttccacaaaaattagaaaacataaaaatgtgtgtaccttttatctttcaagaatcctcgaagatgactgatgaggttctgctcatcttccgatacatctccattgctcccgagtcctttaagcatatcaaccaagatcttccttatattaggggtacgtgaaatagacacaaaagttatacacttaaaatctccttgtattgtcttgtacacttcattagctagagttgtctttccaagaccacccaaaccaacaatagaaaccactttacgttgctctaatggcttgcctttggtcatgatccacttaatgatcttctcccttggaccatcaatccccacgagcctctccacctcctcatacaatgccggtagacggggatcaatttccaccacacttggctcggagatgaaatcatcgatctgattcctcttgcgacgttggtcctcctccataacccgattcttcagttcttggatacactctgtgatctggtgtttgccccataacttctttatcttgcttcctatcttctgaacaaagttggcattcgcatcgccacaactcaacttgtggatgaagaggtcgatgcaatcctcaatatcataagctagctcgagcatgttgttcctccactccttggtcggcccatcaagcttgtcctccttggtcgacagatgctcaagcaagacactgatgctgctgagctcattcctcaaaaagatgatatccttcttcacacttttgagcagcttgtactctccctcgaccaaggcggaaagcttggttagaagaggattcagcacccctactgaagcactaacaaatgctcctgccatctctgttccactctctgctgtttcatcaaccaaccatgcaacgtccagaaacaataacaagcatgaagtacataacacaaacggctagccaagacaattctccaaaagtgtatatgatgtagatgcacccaccaactgcttgattcgtgctccgcgccacgggaggagacgccgggaaaggagcgacgcacggtggaggtggcaacctgctgggagctgccgccagcagaaggaggcagagccagcctagtcgcctcgcctcgcctctaagcgacttctaggtgggttaatcggaggggaatcggtggcgagatcagcctaactcacttgattctcaccatcac
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| CDS seq | atggcaggagcatttgttagtgcttcagtaggggtgctgaatcctcttctaaccaagctttccgccttggtcgagggagagtacaagctgctcaaaagtgtgaagaaggatatcatctttttgaggaatgagctcagcagcatcagtgtcttgcttgagcatctgtcgaccaaggaggacaagcttgatgggccgaccaaggagtggaggaacaacatgctcgagctagcttatgatattgaggattgcatcgacctcttcatccacaagttgagttgtggcgatgcgaatgccaactttgttcagaagataggaagcaagataaagaagttatggggcaaacaccagatcacagagtgtatccaagaactgaagaatcgggttatggaggaggaccaacgtcgcaagaggaatcagatcgatgatttcatctccgagccaagtgtggtggaaattgatccccgtctaccggcattgtatgaggaggtggagaggctcgtggggattgatggtccaagggagaagatcattaagtggatcatgaccaaaggcaagccattagagcaacgtaaagtggtttctattgttggtttgggtggtcttggaaagacaactctagctaatgaagtgtacaagacaatacaaggagattttaagtgtataacttttgtgtctatttcacgtacccctaatataaggaagatcttggttgatatgcttaaaggactcgggagcaatggagatgtatcggaagatgagcagaacctcatcagtcatcttcgaggattcttgaaagataaaaggtacctcattgttgttgatgacatttgggacataggtgcgtggaaggtggtcaattgtgctttcccagagaataatttgggcagtataatcataacaacaacaagaaacactgccgtagctgaagcatgcagccgtaccacatctgaaggctatcttcacagcatgcagccactagaagagcaagattcacagagattattttaccggagagcttttaattctgatagttgctgcccgcctcacctggaagacatctctcatgccatcatatcgaaatgtcgtggtttaccattagctataatctccatagctagcttgctatcaatcaaacctgatacagaggaccagtggatgcaagtgcacaattctattggtgttacactaaactcagacgtcgaagtgagaaaaattttgatgctcagttattatgatcttccttatcccctgaaaaattgtctgttgtatctcagcatgtatccagaggattatgtaattgatagacaagaacttatatggagatggatagctgaaggattcatcattgaagcgaagggaaaaacacgggagcaagtaggagagaactacttcaatgagcttataaatagaagcttgatccaaccagtttatatcgaatatgatggtagggccagttgctgccgagtccacgatattgtgcttgatcttatcattagcctatcaactggacagaatttcgtcacaatagtgcatgaacaacagcattggagttctttcaagaagattcggaggacctggttcccatccaatggcacagataatagaatagtcaaggagattacgaacaactgctcacatgttcgttcgctgttctttgacagtcctaaaccggagcaaataccacaatttaagaaatgccatgctctgcgggtattggttctggatgggtgcatgagcctggagagccagcatattaacagcctaacataccttttccagttgaagtatctgaagctcaatgttgcaaatgttaccgagatgcccaaggatattggacggctgcagcaactagaaacactaattattcatggaggaggacatgtcaacgaaataaacattccgtcaagtgtttgtagactgcaaaaactagagcgcctaattgttgattacccaatgagattgccagatgaaattggatttttgcaagctttggagatgctatctcttttttacaacatagagtacagcataaaatgtttacaagagctccgtcggctgaccagactaaggtatctgcgcataaggacgccttttggaggtgatgtagcaaggttcgagaggtacaaggacgccttttacatgactctcgatgagttaggtaaaaatagccttcaatcattacatgtacatgttacaaccaagttttcagatacattgatggattcatgttgtagtagtgctcccggtctcagagagctttctatttctggcgttggaatatcaaaactttcggagcagatggtttccctttctaatcttgcctatcttgtgatcttctataatactagaagcaatgatcagaaatatatcaacctccttgggtgtatacccaagcttctctatcttaaagtaatattcccccaaggcggggaggatggactcactgtaggctgtggtggatttccctgtctaaaggagttgatgttcaggcatagtcgcctgcattggttgttgtttgaacctggcgctatgccaaaactccaaaggctttctattgagttgtttgcacaaaaagcagcatccaaccttgggtttgagcagagctttgtgcacctttccagcctccagcatctaatcgtcgttcttgattgttctgatgccactacaagggacgtgaaagctttggaagatgccattaggaacgtggccagcatccagactcgctgtcttactctcgaaattctaaggcgctatgaagatgaaatggtaaaggaagacgaagaggagcagctaaaaggcagtacagagggaggtggaactgaagagcatcatattcagtag
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| Protein seq | MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNELSSISVLLEHLSTKEDKLDGPTKEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVQKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRNQIDDFISEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMTKGKPLEQRKVVSIVGLGGLGKTTLANEVYKTIQGDFKCITFVSISRTPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVVDDIWDIGAWKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFNSDSCCPPHLEDISHAIISKCRGLPLAIISIASLLSIKPDTEDQWMQVHNSIGVTLNSDVEVRKILMLSYYDLPYPLKNCLLYLSMYPEDYVIDRQELIWRWIAEGFIIEAKGKTREQVGENYFNELINRSLIQPVYIEYDGRASCCRVHDIVLDLIISLSTGQNFVTIVHEQQHWSSFKKIRRTWFPSNGTDNRIVKEITNNCSHVRSLFFDSPKPEQIPQFKKCHALRVLVLDGCMSLESQHINSLTYLFQLKYLKLNVANVTEMPKDIGRLQQLETLIIHGGGHVNEINIPSSVCRLQKLERLIVDYPMRLPDEIGFLQALEMLSLFYNIEYSIKCLQELRRLTRLRYLRIRTPFGGDVARFERYKDAFYMTLDELGKNSLQSLHVHVTTKFSDTLMDSCCSSAPGLRELSISGVGISKLSEQMVSLSNLAYLVIFYNTRSNDQKYINLLGCIPKLLYLKVIFPQGGEDGLTVGCGGFPCLKELMFRHSRLHWLLFEPGAMPKLQRLSIELFAQKAASNLGFEQSFVHLSSLQHLIVVLDCSDATTRDVKALEDAIRNVASIQTRCLTLEILRRYEDEMVKEDEEEQLKGSTEGGGTEEHHIQ |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0008950 | OsLaMu_12g0008950.01 | Chr12 | 9952908 | 9957707 | - | NAM | ||
| CDS seq | atggcaggagcatttgttagtgcttcagtaggggtgctgaatcctcttctaaccaagctttccgccttggtcgagggagagtacaagctgctcaaaagtgtgaagaaggatatcatctttttgaggaatgagctcagcagcatcagtgtcttgcttgagcatctgtcgaccaaggaggacaagcttgatgggccgaccaaggagtggaggaacaacatgctcgagctagcttatgatattgaggattgcatcgacctcttcatccacaagttgagttgtggcgatgcgaatgccaactttgttcagaagataggaagcaagataaagaagttatggggcaaacaccagatcacagagtgtatccaagaactgaagaatcgggttatggaggaggaccaacgtcgcaagaggaatcagatcgatgatttcatctccgagccaagtgtggtggaaattgatccccgtctaccggcattgtatgaggaggtggagaggctcgtggggattgatggtccaagggagaagatcattaagtggatcatgaccaaaggcaagccattagagcaacgtaaagtggtttctattgttggtttgggtggtcttggaaagacaactctagctaatgaagtgtacaagacaatacaaggagattttaagtgtataacttttgtgtctatttcacgtacccctaatataaggaagatcttggttgatatgcttaaaggactcgggagcaatggagatgtatcggaagatgagcagaacctcatcagtcatcttcgaggattcttgaaagataaaaggtacctcattgttgttgatgacatttgggacataggtgcgtggaaggtggtcaattgtgctttcccagagaataatttgggcagtataatcataacaacaacaagaaacactgccgtagctgaagcatgcagccgtaccacatctgaaggctatcttcacagcatgcagccactagaagagcaagattcacagagattattttaccggagagcttttaattctgatagttgctgcccgcctcacctggaagacatctctcatgccatcatatcgaaatgtcgtggtttaccattagctataatctccatagctagcttgctatcaatcaaacctgatacagaggaccagtggatgcaagtgcacaattctattggtgttacactaaactcagacgtcgaagtgagaaaaattttgatgctcagttattatgatcttccttatcccctgaaaaattgtctgttgtatctcagcatgtatccagaggattatgtaattgatagacaagaacttatatggagatggatagctgaaggattcatcattgaagcgaagggaaaaacacgggagcaagtaggagagaactacttcaatgagcttataaatagaagcttgatccaaccagtttatatcgaatatgatggtagggccagttgctgccgagtccacgatattgtgcttgatcttatcattagcctatcaactggacagaatttcgtcacaatagtgcatgaacaacagcattggagttctttcaagaagattcggaggacctggttcccatccaatggcacagataatagaatagtcaaggagattacgaacaactgctcacatgttcgttcgctgttctttgacagtcctaaaccggagcaaataccacaatttaagaaatgccatgctctgcgggtattggttctggatgggtgcatgagcctggagagccagcatattaacagcctaacataccttttccagttgaagtatctgaagctcaatgttgcaaatgttaccgagatgcccaaggatattggacggctgcagcaactagaaacactaattattcatggaggaggacatgtcaacgaaataaacattccgtcaagtgtttgtagactgcaaaaactagagcgcctaattgttgattacccaatgagattgccagatgaaattggatttttgcaagctttggagatgctatctcttttttacaacatagagtacagcataaaatgtttacaagagctccgtcggctgaccagactaaggtatctgcgcataaggacgccttttggaggtgatgtagcaaggttcgagaggtacaaggacgccttttacatgactctcgatgagttaggtaaaaatagccttcaatcattacatgtacatgttacaaccaagttttcagatacattgatggattcatgttgtagtagtgctcccggtctcagagagctttctatttctggcgttggaatatcaaaactttcggagcagatggtttccctttctaatcttgcctatcttgtgatcttctataatactagaagcaatgatcagaaatatatcaacctccttgggtgtatacccaagcttctctatcttaaagtaatattcccccaaggcggggaggatggactcactgtaggctgtggtggatttccctgtctaaaggagttgatgttcaggcatagtcgcctgcattggttgttgtttgaacctggcgctatgccaaaactccaaaggctttctattgagttgtttgcacaaaaagcagcatccaaccttgggtttgagcagagctttgtgcacctttccagcctccagcatctaatcgtcgttcttgattgttctgatgccactacaagggacgtgaaagctttggaagatgccattaggaacgtggccagcatccagactcgctgtcttactctcgaaattctaaggcgctatgaagatgaaatggtaaaggaagacgaagaggagcagctaaaaggcagtacagagggaggtggaactgaagagcatcatattcagtag
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| Protein seq | MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNELSSISVLLEHLSTKEDKLDGPTKEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVQKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRNQIDDFISEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMTKGKPLEQRKVVSIVGLGGLGKTTLANEVYKTIQGDFKCITFVSISRTPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVVDDIWDIGAWKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFNSDSCCPPHLEDISHAIISKCRGLPLAIISIASLLSIKPDTEDQWMQVHNSIGVTLNSDVEVRKILMLSYYDLPYPLKNCLLYLSMYPEDYVIDRQELIWRWIAEGFIIEAKGKTREQVGENYFNELINRSLIQPVYIEYDGRASCCRVHDIVLDLIISLSTGQNFVTIVHEQQHWSSFKKIRRTWFPSNGTDNRIVKEITNNCSHVRSLFFDSPKPEQIPQFKKCHALRVLVLDGCMSLESQHINSLTYLFQLKYLKLNVANVTEMPKDIGRLQQLETLIIHGGGHVNEINIPSSVCRLQKLERLIVDYPMRLPDEIGFLQALEMLSLFYNIEYSIKCLQELRRLTRLRYLRIRTPFGGDVARFERYKDAFYMTLDELGKNSLQSLHVHVTTKFSDTLMDSCCSSAPGLRELSISGVGISKLSEQMVSLSNLAYLVIFYNTRSNDQKYINLLGCIPKLLYLKVIFPQGGEDGLTVGCGGFPCLKELMFRHSRLHWLLFEPGAMPKLQRLSIELFAQKAASNLGFEQSFVHLSSLQHLIVVLDCSDATTRDVKALEDAIRNVASIQTRCLTLEILRRYEDEMVKEDEEEQLKGSTEGGGTEEHHIQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.075801 | 3.650937 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270300 | RBH | 0.617404 | 1.269819 | 4.729718 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17090 | RBH | 0.479085 | 0.674805 | 1.002374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008950 | RBH | 0.197351 | 8.965397 | 6.821876 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009070 | RBH | 0.000000 | 4.725021 | 1.666354 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009040 | RBH | 0.584897 | 7.771911 | 7.148777 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008870 | RBH | 0.017290 | 0.193562 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008700 | RBH | 1.619708 | 18.236019 | 15.307595 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0133700 | RBH | 2.5910745 | 10.9820965 | 12.4318975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008740 | RBH | 0.248909 | 1.036407 | 1.623713 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0149000 | RBH | 4.2906985 | 5.289073 | 13.6531245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008660 | RBH | 0.220956 | 0.239663 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008920 | RBH | 0.348930 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008850 | RBH | 2.032809 | 14.624340 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008840 | RBH | 0.633953 | 0.0 | 1.653454 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008660 | RBH | 0.000000 | 8.758652 | 6.816113 |
