Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0008940 | OGI:12026190 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:9948763-9952503 | ||||||||
| Gene Symbol | OGR1, ogr1 | ||||||||||
| DNA seq | atgtcggtgtcggcggcggcggcggcgcggcatctggaatccctcctcccgcgcctggcctccctccgccactacctgcagttccacgcgcgcctcctcacctcgggccacctcggcgcccacccgggcctccgcgcccgcttcctcgaccgcctcgcgctctcgccgcaccccgccgcgctcccccacgcgctgctcctcctccgctccctccctaccccggccaccaacgacctcaacgccgcgctcagggggctcgccgcctcgccgcacccggcccgctcgctcctcctcctcgcgggccgcctcctccccgccctgctccctcgccccgacgcgctctcgctctccttcgcgctcaaggcgtccgcccgctgctccgacgcgcacaccacggtgcagctccacgcgctcgtcctccgcctcggcgtcgccgccgacgtccggctgctaaccacgctgcttgactcgtacgccaagtgtggagatctcgcgtccgcgcggaaggtgtttgatgaaatgaccgtgcgggacgtggccacatggaactcgctgctggcggggctagcgcaaggcacggagcctaaccttgctctcgcgctgttccacaggctggctaacagcttccaggagttgccgtcgagggaggaacccaatgaggtgactattgttgcggcgctttccgcgtgtgcgcagattggcttgttaaaagatgggatgtatgtgcacgagtttgctaaaagatttggactggatcgcaatgttcgggtctgcaattcactaattgacatgtactccaagtgtggctcgctgtcaagggccctggatgtgttccattccatcaagccggaagaccggacgcttgtgtcctacaatgctgcaattcaggcacattccatgcatgggcatgggggtgatgcactgagattgtttgatgaaatgcccacacgcattgagccagatggagtgacttaccttgctgtgttgtgcgggtgcaaccattctggccttgtggatgatgggctcagggtattcaactcgatgcgagttgctccaaatatgaagcactatggaacaattgtggaccttcttggccgtgcaggccgtctcactgaggcatatgacaccgtcatttctatgccatttccagctgatattgtcctttggcagacattgttgggtgcagccaagatgcatggggttgttgagcttgcggagttggctgccaataaacttgctgagcttggttctaatgtcgatggtgactatgtgctcctatcgaatgtttatgcatccaaggctcggtggatggatgttggtcgagtacgtgataccatgcgaagcaacgatgtgcgaaaagttcctggcttcagctacacagaaatagatggagtaatgcataagtttattaatggtgacaaagagcacccgaggtggcaagagatatacagagcactggaggacattgtatcaagaattagtgagctaggatatgagccagagacaagcaatgtactgcatgacattggggaggaggaaaaacagtatgcattgtgttatcatagtgagaagctggccattgcatttgggttgattgcaacaccacctggggagactcttcgggtgatcaaaaatctccgaatatgtggggactgtcatgtggtggcaaagctcatctctaaagcttatggtcgtgttattgtcattcgggacagggcgagattccatcgatttgaagatgggcagtgttcctgcagggattactggtaaatagtggcatgctggatcatttaaaggataaatttggcatgagctcgtggagatgaggtcaaaaaggatgatataacatgtctctgatccagcatatcgatttgtatggatactggaacatattcttgaaccatgcatatcacttctgacacttcacacaatgggtcaaacatcaaaaggttgttcgagatataatccagggctccaggcttgctgttgcagatacattcaatttagtccccattgaaattaatcttgtaagttagggtgtgggtggtttgaaaatcctccacttagccttcacagagaatgatcttgagaatgaaataccaaatacagtatacacggtttgaggtttccggatggtttctgctgccactggacctcacaaccctacaaacgtttataatcaccaagagtccaggacacaactggatagtcacaatgccgtaggttacaactagcattcagctggtaatggtatggtactaatgaaaaactgacatcaggataggagcatgctatttttcctttcagggagacaacataatttttcatatctacggagcgaagttttccttcaagtctttggttctttgtcccgattccttaatattgtaagttacagtcatggttcagctgttccattccattaatagccggtgatttcattgtcgattttgatgatgcataataagatgcgcctttatatggtttaatgtagaatcccttgcaatgatgatactatagtgatgaagtaaacttatcctggattataataaatacaaatttttgccttatctttgtgctatgatcattgatgcatttggcagttttggtcagtaccaacgtggtcgtaaaataatcattgcatgatattttccacacataattttgtttgcagtggagtttgggctatctggttctgtgtgaaattattgggttttcaaaaacatttcattgagcgatgtcatgtagcttcctcacaaggatttgtcacttttgcaacagtggaaggccacgacgcaggtgaaactagcAaaaaaaaagatggacgagctccgggccttgtttcttgccagactttgtcttctacacgcggcaagtgatacaggatgtggacggagaagaagatgctggacgcgcaggtgaggtctgctcttggttttttaagcaactgcatctatgttaactttgatggtcaaagttagtcatgtctcacttagaacaaatctaaaacgacaataagtttgaaacagagggaatgttttacataatcttacaattaattattacatggtctaaaggaaaaaacacattgaattattgaaaaccaagtgtaagcttaaccggtgttgtaaataatgatcccttagatacaactttcgtttatattgaagccgatttatgcacgggagaatgtttgatgctgccaacattggggccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgtttagacaggcatgatatcctacaaaattgctgctcatgctgctgatttggcaaagtgccatccgtatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctgtatctggatcctgtgaccactatgtctttccatgatgaaacattaccatcggagggtgccaaagtagcacatttctgctcaatgtgtggcccaaagtcttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacaggatagtggaggaagcggtaataccaggaatgaatgctatgagtgctgagtttttggctgcaaggaaaacgatcagtggggagcaacaaggtgaagctggaggggagatctatgttccagaaagctatacagctcgcaaataa
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| CDS seq | atgtcggtgtcggcggcggcggcggcgcggcatctggaatccctcctcccgcgcctggcctccctccgccactacctgcagttccacgcgcgcctcctcacctcgggccacctcggcgcccacccgggcctccgcgcccgcttcctcgaccgcctcgcgctctcgccgcaccccgccgcgctcccccacgcgctgctcctcctccgctccctccctaccccggccaccaacgacctcaacgccgcgctcagggggctcgccgcctcgccgcacccggcccgctcgctcctcctcctcgcgggccgcctcctccccgccctgctccctcgccccgacgcgctctcgctctccttcgcgctcaaggcgtccgcccgctgctccgacgcgcacaccacggtgcagctccacgcgctcgtcctccgcctcggcgtcgccgccgacgtccggctgctaaccacgctgcttgactcgtacgccaagtgtggagatctcgcgtccgcgcggaaggtgtttgatgaaatgaccgtgcgggacgtggccacatggaactcgctgctggcggggctagcgcaaggcacggagcctaaccttgctctcgcgctgttccacaggctggctaacagcttccaggagttgccgtcgagggaggaacccaatgaggtgactattgttgcggcgctttccgcgtgtgcgcagattggcttgttaaaagatgggatgtatgtgcacgagtttgctaaaagatttggactggatcgcaatgttcgggtctgcaattcactaattgacatgtactccaagtgtggctcgctgtcaagggccctggatgtgttccattccatcaagccggaagaccggacgcttgtgtcctacaatgctgcaattcaggcacattccatgcatgggcatgggggtgatgcactgagattgtttgatgaaatgcccacacgcattgagccagatggagtgacttaccttgctgtgttgtgcgggtgcaaccattctggccttgtggatgatgggctcagggtattcaactcgatgcgagttgctccaaatatgaagcactatggaacaattgtggaccttcttggccgtgcaggccgtctcactgaggcatatgacaccgtcatttctatgccatttccagctgatattgtcctttggcagacattgttgggtgcagccaagatgcatggggttgttcgagatataatccagggctccaggcttgctgttgcagatacattcaatttagtccccattgaaattaatcttggagacaacataatttttcatatctacggagcgaagttttccttcaagtctttggttctttgtcccgattccttaatatttggagtttgggctatctggttctgtgtgaaattattgggttttcaaaaacatttcattgagcgatgtcatgtagcttcctcacaaggatttgtcacttttgcaacagtggaaggccacgacgcaggcatgatatcctacaaaattgctgctcatgctgctgatttggcaaagtgccatccgtatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctgtatctggatcctgtgaccactatgtctttccatgatgaaacattaccatcggagggtgccaaagtagcacatttctgctcaatgtgtggcccaaagtcttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacaggatagtggaggaagcggtaataccaggaatgaatgctatgagtgctgagtttttggctgcaaggaaaacgatcagtggggagcaacaaggtgaagctggaggggagatctatgttccagaaagctatacagctcgcaaataa
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| Protein seq | MSVSAAAAARHLESLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVRDIIQGSRLAVADTFNLVPIEINLGDNIIFHIYGAKFSFKSLVLCPDSLIFGVWAIWFCVKLLGFQKHFIERCHVASSQGFVTFATVEGHDAGMISYKIAAHAADLAKCHPYAQAWDDTLSKARFEFRWLDQFALYLDPVTTMSFHDETLPSEGAKVAHFCSMCGPKSCSMKITEDIRKYADEHGYRIVEEAVIPGMNAMSAEFLAARKTISGEQQGEAGGEIYVPESYTARK |
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| Function | Pentatricopeptide repeat-containing protein OGR1, mitochondrial [UniProtKB/Swiss-Prot:B8YEK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0008940 | OsLaMu_12g0008940.01 | Chr12 | 9948763 | 9952503 | + | NAM | ||
| CDS seq | atgtcggtgtcggcggcggcggcggcgcggcatctggaatccctcctcccgcgcctggcctccctccgccactacctgcagttccacgcgcgcctcctcacctcgggccacctcggcgcccacccgggcctccgcgcccgcttcctcgaccgcctcgcgctctcgccgcaccccgccgcgctcccccacgcgctgctcctcctccgctccctccctaccccggccaccaacgacctcaacgccgcgctcagggggctcgccgcctcgccgcacccggcccgctcgctcctcctcctcgcgggccgcctcctccccgccctgctccctcgccccgacgcgctctcgctctccttcgcgctcaaggcgtccgcccgctgctccgacgcgcacaccacggtgcagctccacgcgctcgtcctccgcctcggcgtcgccgccgacgtccggctgctaaccacgctgcttgactcgtacgccaagtgtggagatctcgcgtccgcgcggaaggtgtttgatgaaatgaccgtgcgggacgtggccacatggaactcgctgctggcggggctagcgcaaggcacggagcctaaccttgctctcgcgctgttccacaggctggctaacagcttccaggagttgccgtcgagggaggaacccaatgaggtgactattgttgcggcgctttccgcgtgtgcgcagattggcttgttaaaagatgggatgtatgtgcacgagtttgctaaaagatttggactggatcgcaatgttcgggtctgcaattcactaattgacatgtactccaagtgtggctcgctgtcaagggccctggatgtgttccattccatcaagccggaagaccggacgcttgtgtcctacaatgctgcaattcaggcacattccatgcatgggcatgggggtgatgcactgagattgtttgatgaaatgcccacacgcattgagccagatggagtgacttaccttgctgtgttgtgcgggtgcaaccattctggccttgtggatgatgggctcagggtattcaactcgatgcgagttgctccaaatatgaagcactatggaacaattgtggaccttcttggccgtgcaggccgtctcactgaggcatatgacaccgtcatttctatgccatttccagctgatattgtcctttggcagacattgttgggtgcagccaagatgcatggggttgttcgagatataatccagggctccaggcttgctgttgcagatacattcaatttagtccccattgaaattaatcttggagacaacataatttttcatatctacggagcgaagttttccttcaagtctttggttctttgtcccgattccttaatatttggagtttgggctatctggttctgtgtgaaattattgggttttcaaaaacatttcattgagcgatgtcatgtagcttcctcacaaggatttgtcacttttgcaacagtggaaggccacgacgcaggcatgatatcctacaaaattgctgctcatgctgctgatttggcaaagtgccatccgtatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctgtatctggatcctgtgaccactatgtctttccatgatgaaacattaccatcggagggtgccaaagtagcacatttctgctcaatgtgtggcccaaagtcttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacaggatagtggaggaagcggtaataccaggaatgaatgctatgagtgctgagtttttggctgcaaggaaaacgatcagtggggagcaacaaggtgaagctggaggggagatctatgttccagaaagctatacagctcgcaaataa
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| Protein seq | MSVSAAAAARHLESLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVRDIIQGSRLAVADTFNLVPIEINLGDNIIFHIYGAKFSFKSLVLCPDSLIFGVWAIWFCVKLLGFQKHFIERCHVASSQGFVTFATVEGHDAGMISYKIAAHAADLAKCHPYAQAWDDTLSKARFEFRWLDQFALYLDPVTTMSFHDETLPSEGAKVAHFCSMCGPKSCSMKITEDIRKYADEHGYRIVEEAVIPGMNAMSAEFLAARKTISGEQQGEAGGEIYVPESYTARK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.329421 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270200 | RBH | 1.098725 | 0.769711 | 1.295363 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17080 | RBH | 0.613291 | 0.499360 | 0.290388 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008940 | RBH | 0.154361 | 2.398059 | 1.680018 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009050 | RBH | 0.092167 | 1.189118 | 0.312607 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009030 | RBH | 0.000000 | 5.121805 | 4.497255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008860 | RBH | 0.170550 | 0.166409 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008690 | RBH | 0.503192 | 0.980302 | 5.276585 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0133500 | RBH | 2.549165 | 5.681107 | 3.2523465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008730 | RBH | 0.0 | 0.000000 | 0.337543 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0148900 | RBH | 2.4880495 | 6.165681 | 10.9156305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008650 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008910 | RBH | 0.036455 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008840 | RBH | 0.000000 | 1.953005 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008830 | RBH | 0.289827 | 0.0 | 0.045849 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008720 | RBH | 0.000000 | 0.724209 | 0.351960 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008650 | RBH | 0.739617 | 1.751463 | 1.976511 |
