Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0007450 | OGI:12018790 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:6916937-6919462 | ||||||||
| Gene Symbol | OGR1, ogr1 | ||||||||||
| DNA seq | ttaaggggattgcagaggatctggttcacccagtaaaagctccgtagcaatgccatctaaaactgtctgcataataaacagagtgtttacattataaaaacagagataacaagaacctcaatgagaacttactgtttgtttataagaaaaaggaaaagaaagaaacctgggttcaatcaagttccctatagttccttgccatgacatatcttacaaaaatcaagaatagcctcatcgcatgacatacatctctatgaagacagtacatgcaatccttcatcagatttgcactaccttttttctgcccatttgacatatacctctatgaagacagtacaaattttatctcacttccagctcagctccaggccattattcatgaacgtaaggtagggtattaataaaagtctgtcagcaggaagctgagcattagattagtaaaatcttgtcttctggtagaatttccttttccttctacagtgaaggctattaagaggttcatgaatgacgaagaacaaggagttttcagcacagtcaagttgggggaacataaccttcctgttttaaatggaagtaaatattcttcaatgctgaatagatttcttctgaacatgcatgtgaaacatctgccaccaaaaagtcgtggaattttccttcgacctcgatagagctacagccaggattcttctttacccctctatctctcatcgtcattctcagcatcttcacctgatcccatttatttttacttgcatatagttggctcataagtacatagattccactgtctgaaggatccagttctacaagcttatctgcaacacatgcaccaatctctacattcccatgcattctgcatgcatttagaagagcaccccaaccagcctcatcagcttccatcggcataccccttgcaacttcaaatgcctcttccagaagcccaactttacccaaaagatcaatcatgcatgcataatgttctaccctgggttcaatcctataaaacatttccatttctttaaaatatcgtcgtccttccgaaactaacccactgtgactgcatgaagcaagcaatcccaggaaagtgatctgatcaggcacaatattctctcctttcaactgctcaaagagacgaatagcttcttcagactgaccatgcacggcatgggccatgatcatagtgttccaactcactacgttcctctctgccatctcatcaaataattttgatgcttcacctacatccccacattttgcaaacatatcaatgagcgcattacctaaattaacagtaagcccaatcttattactcacaatgtagttctcatatatccacctgccaagatccaagcaacctaactgagcacacgctgacagaacactcacaagggtagcatcaattggatccacacctgctgcaatcatctccctgaataaccatactgcttcttcaggttgattcaactgtgagtaagctgcgatcatgcaactccaagaaaccacatttctcctgggcatatcctcgaatagctgttctgcactttccaaatcaccacacttagcgtatgcattaaccatgctcgtccaggagtagacatccttaacctccatgccatcaaaaacctcccttgcatatctcacgcacccacacttcccaaacatatccaccagcgcattatccaaattgacactccgagcaacaccaccctctgtgacatacttgtgcagcatgatcccaaaagctagcaaccccatctgaccaatcgcggagacagcagccaccagcgtcaccgcgttaggccgcatggctccaacaacaaccatcctgcagaacagcctccatgcctcgtcagccaaccctgcccgtgcatacccatccaccagcgtcgtccaagagacaacatccctctcaggcatttcatcgaacatcttgcctgcatcatccagtgacttgtggttcgcatagaagtgtaccagcgcgttccccacgagcacgctctcgccaacgaacccgcacttgagggccgcgcagtggatggcctcgccgcctgagggggttccaccgtgctccgactcggcggcggcggcggcggccttgaccgcgaagacgaacgtgcgcgcgtcggcggggaggcgatcccggacgacgcggcggaataggcccagcgcgcgggcggggaggcgggcgcggaggaagccccgcatcatggtgccgagcatgtaggcgttgggccccggggatgcgcgggcgaggatcgcggcggcgtgggcgaggcgcggcggcgtggagagcgcgcagaaggcgaggaggcgagacgccgggaagcggtgcgcggcgaggcccgtgacggtgaggagcgcgtggagctggaggaggcggcggaaggaggcgcacgactcgaggagggagagcagcgggtgggtcaccaccaggttccggttggtgttccacgccggccggggcagaaccgctgccgccgccgaccccgccgggttggggagtggaacgggaggcgtcggcgccat
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| CDS seq | atggcgccgacgcctcccgttccactccccaacccggcggggtcggcggcggcagcggttctgccccggccggcgtggaacaccaaccggaacctggtggtgacccacccgctgctctccctcctcgagtcgtgcgcctccttccgccgcctcctccagctccacgcgctcctcaccgtcacgggcctcgccgcgcaccgcttcccggcgtctcgcctcctcgccttctgcgcgctctccacgccgccgcgcctcgcccacgccgccgcgatcctcgcccgcgcatccccggggcccaacgcctacatgctcggcaccatgatgcggggcttcctccgcgcccgcctccccgcccgcgcgctgggcctattccgccgcgtcgtccgggatcgcctccccgccgacgcgcgcacgttcgtcttcgcggtcaaggccgccgccgccgccgccgagtcggagcacggtggaaccccctcaggcggcgaggccatccactgcgcggccctcaagtgcgggttcgttggcgagagcgtgctcgtggggaacgcgctggtacacttctatgcgaaccacaagtcactggatgatgcaggcaagatgttcgatgaaatgcctgagagggatgttgtctcttggacgacgctggtggatgggtatgcacgggcagggttggctgacgaggcatggaggctgttctgcaggatggttgttgttggagccatgcggcctaacgcggtgacgctggtggctgctgtctccgcgattggtcagatggggttgctagcttttgggatcatgctgcacaagtatgtcacagagggtggtgttgctcggagtgtcaatttggataatgcgctggtggatatgtttgggaagtgtgggtgcgtgagatatgcaagggaggtttttgatggcatggaggttaaggatgtctactcctggacgagcatggttaatgcatacgctaagtgtggtgatttggaaagtgcagaacagctattcgaggatatgcccaggagaaatgtggtttcttggagttgcatgatcgcagcttactcacagttgaatcaacctgaagaagcagtatggttattcagggagatgattgcagcaggtgtggatccaattgatgctacccttgtgagtgttctgtcagcgtgtgctcagttaggttgcttggatcttggcaggtggatatatgagaactacattgtgagtaataagattgggcttactgttaatttaggtaatgcgctcattgatatgtttgcaaaatgtggggatgtaggtgaagcatcaaaattatttgatgagatggcagagaggaacgtagtgagttggaacactatgatcatggcccatgccgtgcatggtcagtctgaagaagctattcgtctctttgagcagttgaaaggagagaatattgtgcctgatcagatcactttcctgggattgcttgcttcatgcagtcacagtgggttagtttcggaaggacgacgatattttaaagaaatggaaatgttttataggattgaacccagggtagaacattatgcatgcatgattgatcttttgggtaaagttgggcttctggaagaggcatttgaagttgcaaggggtatgccgatggaagctgatgaggctggttggggtgctcttctaaatgcatgcagaatgcatgggaatgtagagattggtgcatgtgttgcagataagcttgtagaactggatccttcagacagtggaatctatgtacttatgagccaactatatgcaagtaaaaataaatgggatcaggtgaagatgctgagaatgacgatgagagatagaggggtaaagaagaatcctggctgtagctctatcgaggtcgaaggaaaattccacgactttttggtggcagatgtttcacatgcatgttcagaagaaatctattcagcattgaagaatatttacttccatttaaaacaggaagttttagatggcattgctacggagcttttactgggtgaaccagatcctctgcaatccccttaa
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| Protein seq | MAPTPPVPLPNPAGSAAAAVLPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKMFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGAMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFEDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQLYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLKQEVLDGIATELLLGEPDPLQSP |
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| Function | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial [UniProtKB/Swiss-Prot:Q9SJZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0007450 | OsLaMu_12g0007450.01 | Chr12 | 6916937 | 6919462 | - | NAM | ||
| CDS seq | atggcgccgacgcctcccgttccactccccaacccggcggggtcggcggcggcagcggttctgccccggccggcgtggaacaccaaccggaacctggtggtgacccacccgctgctctccctcctcgagtcgtgcgcctccttccgccgcctcctccagctccacgcgctcctcaccgtcacgggcctcgccgcgcaccgcttcccggcgtctcgcctcctcgccttctgcgcgctctccacgccgccgcgcctcgcccacgccgccgcgatcctcgcccgcgcatccccggggcccaacgcctacatgctcggcaccatgatgcggggcttcctccgcgcccgcctccccgcccgcgcgctgggcctattccgccgcgtcgtccgggatcgcctccccgccgacgcgcgcacgttcgtcttcgcggtcaaggccgccgccgccgccgccgagtcggagcacggtggaaccccctcaggcggcgaggccatccactgcgcggccctcaagtgcgggttcgttggcgagagcgtgctcgtggggaacgcgctggtacacttctatgcgaaccacaagtcactggatgatgcaggcaagatgttcgatgaaatgcctgagagggatgttgtctcttggacgacgctggtggatgggtatgcacgggcagggttggctgacgaggcatggaggctgttctgcaggatggttgttgttggagccatgcggcctaacgcggtgacgctggtggctgctgtctccgcgattggtcagatggggttgctagcttttgggatcatgctgcacaagtatgtcacagagggtggtgttgctcggagtgtcaatttggataatgcgctggtggatatgtttgggaagtgtgggtgcgtgagatatgcaagggaggtttttgatggcatggaggttaaggatgtctactcctggacgagcatggttaatgcatacgctaagtgtggtgatttggaaagtgcagaacagctattcgaggatatgcccaggagaaatgtggtttcttggagttgcatgatcgcagcttactcacagttgaatcaacctgaagaagcagtatggttattcagggagatgattgcagcaggtgtggatccaattgatgctacccttgtgagtgttctgtcagcgtgtgctcagttaggttgcttggatcttggcaggtggatatatgagaactacattgtgagtaataagattgggcttactgttaatttaggtaatgcgctcattgatatgtttgcaaaatgtggggatgtaggtgaagcatcaaaattatttgatgagatggcagagaggaacgtagtgagttggaacactatgatcatggcccatgccgtgcatggtcagtctgaagaagctattcgtctctttgagcagttgaaaggagagaatattgtgcctgatcagatcactttcctgggattgcttgcttcatgcagtcacagtgggttagtttcggaaggacgacgatattttaaagaaatggaaatgttttataggattgaacccagggtagaacattatgcatgcatgattgatcttttgggtaaagttgggcttctggaagaggcatttgaagttgcaaggggtatgccgatggaagctgatgaggctggttggggtgctcttctaaatgcatgcagaatgcatgggaatgtagagattggtgcatgtgttgcagataagcttgtagaactggatccttcagacagtggaatctatgtacttatgagccaactatatgcaagtaaaaataaatgggatcaggtgaagatgctgagaatgacgatgagagatagaggggtaaagaagaatcctggctgtagctctatcgaggtcgaaggaaaattccacgactttttggtggcagatgtttcacatgcatgttcagaagaaatctattcagcattgaagaatatttacttccatttaaaacaggaagttttagatggcattgctacggagcttttactgggtgaaccagatcctctgcaatccccttaa
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| Protein seq | MAPTPPVPLPNPAGSAAAAVLPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKMFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGAMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFEDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQLYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLKQEVLDGIATELLLGEPDPLQSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111224 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0233200 | RBH | 1.105900 | 0.570185 | 0.599114 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g13110 | RBH | 0.694996 | 0.364304 | 0.145254 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0233200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007480 | RBH | 0.718743 | 0.0 | 0.317322 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007570 | RBH | 0.064277 | 0.0 | 0.479953 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007660 | RBH | 0.634256 | 0.0 | 0.457845 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007640 | RBH | 0.070005 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007450 | RBH | 2.532923 | 3.395377 | 4.129087 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0103200 | RBH | 0.981943 | 2.5682585 | 0.647714 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007420 | RBH | 0.095138 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0107700 | RBH | 0.8834685 | 3.386808 | 4.121597 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007270 | RBH | 0.054841 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007560 | RBH | 0.326709 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007440 | RBH | 0.090622 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007350 | RBH | 0.102423 | 0.452412 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007410 | RBH | 0.654030 | 1.943487 | 0.000000 |
