Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0004980 | OGI:12009890 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:3807467-3808500 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgaggcatcctcttttatgaccctgccgcgattgtcgtctctttccttccgttccctgtggatcatgagactcctcgtcgcaacaaggaatgcttctggttgtaccgtggtgtgtctgtccttgatgccagcggtgtgctcaaattcatcgacgtcgcccgcgatgatggacttggctttgagtctctcaggcgtgatgctggttttactgtcacctgctacagcctcgtgttgggagaacataagaagaagaaacacaggagaaccatggagtggagggaggactacaagatcacctccaatgagctcttgtctatcaacagccttggctgcctcccacgcaccttactcatgttccctcaagtggacattgacaggccacatatagtgctcttccttgcccctgaattacggtatgtcatcaagaagatgtgggtcgtcgccattgacatgaacaccaagatcgtggagtcatcttctctgtacatcaatgggaaggaggaccttcaaactgaggacgctgacctgacccgtgcaaagtcgcgctttccgcattgactttttaaaacatgtttgagtgttcgtcttattcaaaaaatttaagtaattattaatttttttcctatcatttgatttattgttaaatatacttttatttgtacatattagttttacatatttcacaaaagttttttgaataagatttatggttaaatatgtgctaaaaagtcaacggggtcaaatatttagggacggatggagtatattgttggaaacttttagcatttgtaagtgaagtatgcttatgccttaagtagtggctgtttttgccaattctttctaaaattaattatagcacaactggagtagtttacaaagcatctttgcatgctagccttatcttgctaatggacgcaagtttaattggaacaccatccatctaaatcatttgtgttggtggacatttcagatattgtatgcaaggaaattcactatttatgtattgcaggacgaggaacaatatggaatga
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| CDS seq | atgcgaggcatcctcttttatgaccctgccgcgattgtcgtctctttccttccgttccctgtggatcatgagactcctcgtcgcaacaaggaatgcttctggttgtaccgtggtgtgtctgtccttgatgccagcggtgtgctcaaattcatcgacgtcgcccgcgatgatggacttggctttgagtctctcaggcgtgatgctggttttactgtcacctgctacagcctcgtgttgggagaacataagaagaagaaacacaggagaaccatggagtggagggaggactacaagatcacctccaatgagctcttgtctatcaacagccttggctgcctcccacgcaccttactcatgttccctcaagtggacattgacaggccacatatagtgctcttccttgcccctgaattacggtatgtcatcaagaagatgtgggtcgtcgccattgacatgaacaccaagatcgtggagtcatcttctctgtacatcaatgggaaggaggaccttcaaactgaggacgctgacctgacccgtgcaaagtcgcgctttccgcattga
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| Protein seq | MRGILFYDPAAIVVSFLPFPVDHETPRRNKECFWLYRGVSVLDASGVLKFIDVARDDGLGFESLRRDAGFTVTCYSLVLGEHKKKKHRRTMEWREDYKITSNELLSINSLGCLPRTLLMFPQVDIDRPHIVLFLAPELRYVIKKMWVVAIDMNTKIVESSSLYINGKEDLQTEDADLTRAKSRFPH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0004980 | OsLaMu_12g0004980.01 | Chr12 | 3807467 | 3808500 | + | NAM | ||
| CDS seq | atgcgaggcatcctcttttatgaccctgccgcgattgtcgtctctttccttccgttccctgtggatcatgagactcctcgtcgcaacaaggaatgcttctggttgtaccgtggtgtgtctgtccttgatgccagcggtgtgctcaaattcatcgacgtcgcccgcgatgatggacttggctttgagtctctcaggcgtgatgctggttttactgtcacctgctacagcctcgtgttgggagaacataagaagaagaaacacaggagaaccatggagtggagggaggactacaagatcacctccaatgagctcttgtctatcaacagccttggctgcctcccacgcaccttactcatgttccctcaagtggacattgacaggccacatatagtgctcttccttgcccctgaattacggtatgtcatcaagaagatgtgggtcgtcgccattgacatgaacaccaagatcgtggagtcatcttctctgacgaggaacaatatggaatga
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| Protein seq | MRGILFYDPAAIVVSFLPFPVDHETPRRNKECFWLYRGVSVLDASGVLKFIDVARDDGLGFESLRRDAGFTVTCYSLVLGEHKKKKHRRTMEWREDYKITSNELLSINSLGCLPRTLLMFPQVDIDRPHIVLFLAPELRYVIKKMWVVAIDMNTKIVESSSLTRNNME |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0004980 | OsLaMu_12g0004980.02 | Chr12 | 3807467 | 3808037 | + | NAM | ||
| CDS seq | atgcgaggcatcctcttttatgaccctgccgcgattgtcgtctctttccttccgttccctgtggatcatgagactcctcgtcgcaacaaggaatgcttctggttgtaccgtggtgtgtctgtccttgatgccagcggtgtgctcaaattcatcgacgtcgcccgcgatgatggacttggctttgagtctctcaggcgtgatgctggttttactgtcacctgctacagcctcgtgttgggagaacataagaagaagaaacacaggagaaccatggagtggagggaggactacaagatcacctccaatgagctcttgtctatcaacagccttggctgcctcccacgcaccttactcatgttccctcaagtggacattgacaggccacatatagtgctcttccttgcccctgaattacggtatgtcatcaagaagatgtgggtcgtcgccattgacatgaacaccaagatcgtggagtcatcttctctgtacatcaatgggaaggaggaccttcaaactgaggacgctgacctgacccgtgcaaagtcgcgctttccgcattga
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| Protein seq | MRGILFYDPAAIVVSFLPFPVDHETPRRNKECFWLYRGVSVLDASGVLKFIDVARDDGLGFESLRRDAGFTVTCYSLVLGEHKKKKHRRTMEWREDYKITSNELLSINSLGCLPRTLLMFPQVDIDRPHIVLFLAPELRYVIKKMWVVAIDMNTKIVESSSLYINGKEDLQTEDADLTRAKSRFPH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.428492 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0172400 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07440 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0172400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005080 | RBH | 0.289069 | 0.0 | 0.787570 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004910 | RBH | 0.054149 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005040 | RBH | 0.0 | 0.000000 | 0.760648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0062400 | RBH | 0.4331955 | 1.817346 | 0.578015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005010 | RBH | 0.0 | 0.280907 | 0.120070 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0066600 | RBH | 0.6677105 | 2.4108125 | 0.3082525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005010 | RBH | 0.553352 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004940 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004850 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005050 | RBH | 0.303715 | 0.000000 | 0.0 |
